Run ID: ERR4822193
Sample name:
Date: 01-04-2023 17:41:16
Number of reads: 4766217
Percentage reads mapped: 99.27
Strain: lineage4.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.2 | Euro-American | H;T;LAM | None | 1.0 |
lineage4.2.1 | Euro-American (TUR) | H3;H4 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 7623 | p.Pro108Ser | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 778998 | c.-518G>A | upstream_gene_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 0.99 |
rrs | 1472566 | n.721G>A | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472579 | n.734G>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472670 | n.825G>T | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472675 | n.830T>C | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472677 | n.832C>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472681 | n.837_838delTT | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472690 | n.845C>A | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472952 | n.1107T>C | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472955 | n.1110C>T | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472973 | n.1128A>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 0.14 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.11 |
rrs | 1473055 | n.1210C>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 0.25 |
rrs | 1473088 | n.1243A>G | non_coding_transcript_exon_variant | 0.16 |
rrs | 1473093 | n.1248C>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475642 | n.1985T>C | non_coding_transcript_exon_variant | 0.33 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2155371 | c.741C>T | synonymous_variant | 1.0 |
PPE35 | 2169879 | p.Phe245Cys | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
ald | 3086742 | c.-78A>C | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612113 | c.1003dupG | frameshift_variant | 1.0 |
rpoA | 3878680 | c.-173C>T | upstream_gene_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4249594 | c.3081G>A | synonymous_variant | 1.0 |
ethA | 4328376 | c.-903G>C | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |