Run ID: ERR4828952
Sample name:
Date: 01-04-2023 19:11:29
Number of reads: 1019250
Percentage reads mapped: 99.61
Strain: lineage4.1.1
Drug-resistance: MDR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.1 | Euro-American (X-type) | X1;X2;X3 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761155 | p.Ser450Leu | missense_variant | 1.0 | rifampicin |
katG | 2155168 | p.Ser315Thr | missense_variant | 1.0 | isoniazid |
embB | 4249583 | p.Asp1024Asn | missense_variant | 1.0 | ethambutol |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
rpoB | 761199 | p.Glu465Gln | missense_variant | 1.0 |
rpoB | 761698 | p.Asp631Gly | missense_variant | 1.0 |
rpoB | 763056 | p.Thr1084Pro | missense_variant | 0.13 |
rpoB | 763144 | p.Glu1113Gly | missense_variant | 0.1 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpR5 | 779011 | p.Asp8Asn | missense_variant | 0.12 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1475451 | n.1794T>C | non_coding_transcript_exon_variant | 0.17 |
inhA | 1674686 | p.Thr162Met | missense_variant | 0.12 |
rpsA | 1833759 | p.Asp73Val | missense_variant | 0.12 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102367 | p.Ala226Pro | missense_variant | 0.1 |
katG | 2154796 | p.Gln439Arg | missense_variant | 0.11 |
PPE35 | 2167955 | c.2658A>C | synonymous_variant | 0.22 |
PPE35 | 2167965 | p.Ala883Gly | missense_variant | 0.22 |
PPE35 | 2167967 | c.2646A>C | synonymous_variant | 0.2 |
PPE35 | 2168049 | p.Gly855Asp | missense_variant | 0.25 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
thyX | 3067899 | p.Asp16Val | missense_variant | 0.12 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fbiA | 3641447 | p.Thr302Met | missense_variant | 1.0 |
alr | 3840864 | p.Asp186Gly | missense_variant | 1.0 |
rpoA | 3877553 | p.Glu319Lys | missense_variant | 1.0 |
embC | 4240390 | p.Asn176Lys | missense_variant | 1.0 |
embC | 4240897 | c.1035C>G | synonymous_variant | 1.0 |
embC | 4241886 | p.Leu675Pro | missense_variant | 0.14 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embB | 4249408 | c.2895G>A | synonymous_variant | 1.0 |
aftB | 4267005 | p.Val611Ala | missense_variant | 0.11 |
aftB | 4267227 | p.Val537Ala | missense_variant | 0.11 |
aftB | 4267747 | p.Ser364Ala | missense_variant | 1.0 |
aftB | 4267754 | c.1082delA | frameshift_variant | 0.14 |
aftB | 4268055 | p.Asn261Ser | missense_variant | 0.1 |
aftB | 4268606 | p.Met77Ile | missense_variant | 0.29 |
ethA | 4326129 | p.Gln449* | stop_gained | 1.0 |
ethA | 4327161 | p.Ile105Leu | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407551 | p.Met218Val | missense_variant | 1.0 |