Run ID: ERR4831719
Sample name:
Date: 01-04-2023 21:04:50
Number of reads: 574714
Percentage reads mapped: 93.22
Strain: lineage2.2.1
Drug-resistance: MDR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage2 | East-Asian | Beijing | RD105 | 0.98 |
lineage2.2.1 | East-Asian (Beijing) | Beijing-RD181 | RD105;RD207;RD181 | 0.95 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761110 | p.Asp435Val | missense_variant | 0.85 | rifampicin |
rpsL | 781687 | p.Lys43Arg | missense_variant | 0.95 | streptomycin |
katG | 2155129 | p.Trp328Leu | missense_variant | 0.17 | isoniazid |
katG | 2155168 | p.Ser315Thr | missense_variant | 1.0 | isoniazid |
pncA | 2288971 | p.Glu91* | stop_gained | 0.97 | pyrazinamide |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5088 | c.-152C>A | upstream_gene_variant | 0.14 |
gyrB | 5809 | c.570C>A | synonymous_variant | 0.13 |
gyrB | 6350 | c.1113delC | frameshift_variant | 0.13 |
gyrA | 6904 | c.-398C>G | upstream_gene_variant | 0.11 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7443 | p.Leu48Ile | missense_variant | 0.13 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 7777 | p.Arg159Leu | missense_variant | 0.13 |
gyrA | 7952 | c.651C>A | synonymous_variant | 0.15 |
gyrA | 8353 | p.Gly351Val | missense_variant | 0.17 |
gyrA | 8373 | p.Leu358Met | missense_variant | 0.12 |
gyrA | 8544 | p.Asp415Tyr | missense_variant | 0.13 |
gyrA | 8945 | c.1644G>C | synonymous_variant | 0.11 |
gyrA | 8946 | c.1645T>C | synonymous_variant | 0.11 |
gyrA | 8957 | c.1656C>T | synonymous_variant | 0.13 |
gyrA | 8967 | p.Ala556Lys | missense_variant | 0.15 |
gyrA | 8978 | c.1677C>T | synonymous_variant | 0.15 |
gyrA | 8987 | c.1686C>G | synonymous_variant | 0.15 |
gyrA | 8990 | c.1689C>G | synonymous_variant | 0.12 |
gyrA | 8993 | c.1692C>T | synonymous_variant | 0.12 |
gyrA | 8996 | c.1695T>C | synonymous_variant | 0.12 |
gyrA | 8998 | p.Leu566Trp | missense_variant | 0.15 |
gyrA | 9018 | p.Gln573Asn | missense_variant | 0.17 |
gyrA | 9023 | c.1722A>C | synonymous_variant | 0.18 |
gyrA | 9026 | c.1725G>C | synonymous_variant | 0.17 |
gyrA | 9029 | c.1728T>C | synonymous_variant | 0.17 |
gyrA | 9035 | c.1734G>C | synonymous_variant | 0.25 |
gyrA | 9044 | c.1743C>G | synonymous_variant | 0.33 |
gyrA | 9047 | c.1746C>T | synonymous_variant | 0.33 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
gyrA | 9482 | c.2181G>T | synonymous_variant | 0.15 |
fgd1 | 490691 | c.-92G>T | upstream_gene_variant | 0.25 |
fgd1 | 490721 | c.-62C>A | upstream_gene_variant | 0.5 |
fgd1 | 491031 | c.249C>T | synonymous_variant | 0.2 |
fgd1 | 491191 | p.Gly137Arg | missense_variant | 0.17 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 575401 | c.54G>A | synonymous_variant | 0.22 |
mshA | 575417 | p.Ala24Thr | missense_variant | 0.29 |
mshA | 575907 | p.Ala187Val | missense_variant | 0.75 |
ccsA | 620212 | p.Gly108Cys | missense_variant | 0.25 |
ccsA | 620493 | c.603G>A | synonymous_variant | 0.17 |
ccsA | 620625 | p.Ile245Met | missense_variant | 1.0 |
ccsA | 620758 | p.Arg290Cys | missense_variant | 0.33 |
rpoB | 759906 | p.Ser34Pro | missense_variant | 0.11 |
rpoB | 760522 | p.Ser239Asn | missense_variant | 0.22 |
rpoB | 760532 | c.726T>C | synonymous_variant | 0.22 |
rpoB | 760541 | c.735G>C | synonymous_variant | 0.22 |
rpoB | 760542 | p.Phe246Leu | missense_variant | 0.22 |
rpoB | 760581 | p.Asp259His | missense_variant | 0.2 |
rpoB | 760586 | c.780C>T | synonymous_variant | 0.2 |
rpoB | 760608 | c.802C>T | synonymous_variant | 0.18 |
rpoB | 760611 | c.805T>C | synonymous_variant | 0.18 |
rpoB | 760634 | c.828T>C | synonymous_variant | 0.13 |
rpoB | 760646 | c.840C>G | synonymous_variant | 0.12 |
rpoB | 760655 | c.849A>G | synonymous_variant | 0.11 |
rpoB | 761012 | p.Asp402Glu | missense_variant | 0.4 |
rpoB | 761139 | p.His445* | stop_gained | 0.14 |
rpoB | 761303 | c.1497G>C | synonymous_variant | 0.15 |
rpoB | 761318 | c.1512G>T | synonymous_variant | 0.15 |
rpoB | 761327 | c.1521A>G | synonymous_variant | 0.13 |
rpoB | 761333 | c.1527G>T | synonymous_variant | 0.12 |
rpoB | 761339 | c.1533C>G | synonymous_variant | 0.12 |
rpoB | 761352 | p.Gly516Cys | missense_variant | 0.2 |
rpoB | 761750 | c.1944G>A | synonymous_variant | 0.4 |
rpoB | 762044 | c.2238C>T | synonymous_variant | 0.14 |
rpoB | 762158 | c.2352G>C | synonymous_variant | 0.17 |
rpoB | 762167 | c.2361T>C | synonymous_variant | 0.18 |
rpoB | 762176 | c.2370T>C | synonymous_variant | 0.18 |
rpoB | 762185 | c.2379G>C | synonymous_variant | 0.18 |
rpoB | 762194 | c.2388G>C | synonymous_variant | 0.22 |
rpoB | 762233 | c.2427G>C | synonymous_variant | 0.22 |
rpoB | 762236 | c.2430G>C | synonymous_variant | 0.22 |
rpoB | 762455 | p.His883Gln | missense_variant | 0.17 |
rpoB | 762474 | p.Gly890Cys | missense_variant | 0.25 |
rpoC | 762995 | c.-375G>T | upstream_gene_variant | 0.14 |
rpoC | 763031 | c.-339T>G | upstream_gene_variant | 0.94 |
rpoC | 763034 | c.-336C>G | upstream_gene_variant | 0.21 |
rpoC | 763040 | c.-330C>G | upstream_gene_variant | 0.21 |
rpoC | 763070 | c.-300T>C | upstream_gene_variant | 0.17 |
rpoC | 763082 | c.-288C>T | upstream_gene_variant | 0.18 |
rpoC | 763088 | c.-282C>G | upstream_gene_variant | 0.16 |
rpoC | 763094 | c.-276G>C | upstream_gene_variant | 0.12 |
rpoC | 763525 | p.Phe52Leu | missense_variant | 0.12 |
rpoC | 763570 | c.201G>C | synonymous_variant | 0.14 |
rpoC | 763573 | c.204G>C | synonymous_variant | 0.2 |
rpoC | 763594 | c.225C>T | synonymous_variant | 0.17 |
rpoC | 763606 | c.237C>G | synonymous_variant | 0.14 |
rpoC | 763607 | p.Val80Leu | missense_variant | 0.14 |
rpoC | 763622 | p.Ala85Ser | missense_variant | 0.14 |
rpoC | 763627 | p.Lys86Asn | missense_variant | 0.14 |
rpoC | 763668 | p.Pro100His | missense_variant | 0.13 |
rpoC | 764687 | p.Gln440Glu | missense_variant | 0.12 |
rpoC | 764928 | p.Lys520Arg | missense_variant | 0.12 |
rpoC | 765102 | p.Arg578Gln | missense_variant | 0.2 |
rpoC | 765375 | p.Gly669Val | missense_variant | 0.25 |
rpoC | 765961 | c.2592G>A | synonymous_variant | 0.18 |
rpoC | 766239 | p.Ile957Thr | missense_variant | 0.11 |
rpoC | 767208 | p.Ala1280Val | missense_variant | 0.15 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 775834 | p.Ala883Thr | missense_variant | 0.2 |
mmpL5 | 775999 | p.Gly828Cys | missense_variant | 0.13 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 776182 | p.Asp767Asn | missense_variant | 0.92 |
mmpL5 | 776863 | p.His540Asn | missense_variant | 0.2 |
mmpL5 | 777996 | p.Ala162Asp | missense_variant | 0.17 |
mmpS5 | 778665 | p.Ile81Val | missense_variant | 0.18 |
mmpL5 | 779088 | c.-608A>G | upstream_gene_variant | 0.2 |
mmpR5 | 779348 | p.Val120Glu | missense_variant | 0.25 |
mmpS5 | 779615 | c.-710C>G | upstream_gene_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781403 | c.-157G>T | upstream_gene_variant | 0.14 |
rpsL | 781446 | c.-114G>A | upstream_gene_variant | 0.12 |
fbiC | 1303114 | p.Ala62Ser | missense_variant | 0.22 |
fbiC | 1303605 | c.675C>T | synonymous_variant | 0.25 |
fbiC | 1303723 | p.Glu265Lys | missense_variant | 0.12 |
fbiC | 1304076 | c.1146C>G | synonymous_variant | 0.2 |
fbiC | 1304725 | p.Val599Leu | missense_variant | 0.18 |
fbiC | 1305322 | p.Val798Met | missense_variant | 0.14 |
Rv1258c | 1406311 | p.Leu344Met | missense_variant | 0.12 |
Rv1258c | 1406760 | c.580_581insC | frameshift_variant | 1.0 |
Rv1258c | 1407201 | p.Val47Ala | missense_variant | 0.2 |
Rv1258c | 1407336 | p.Arg2Ile | missense_variant | 0.18 |
embR | 1416327 | p.Ile341Val | missense_variant | 0.12 |
embR | 1416820 | c.528C>A | synonymous_variant | 0.13 |
embR | 1417453 | c.-106G>A | upstream_gene_variant | 0.12 |
atpE | 1461083 | c.39T>A | synonymous_variant | 0.13 |
atpE | 1461173 | c.129C>A | synonymous_variant | 0.14 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472070 | n.228_230delTGA | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472108 | n.263C>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472113 | n.268T>C | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472178 | n.333C>A | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472969 | n.1124A>G | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472970 | n.1125C>G | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472977 | n.1132G>C | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472978 | n.1133T>C | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472989 | n.1144G>A | non_coding_transcript_exon_variant | 0.28 |
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 0.28 |
rrs | 1473028 | n.1183A>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1473403 | n.-255C>A | upstream_gene_variant | 0.13 |
rrl | 1473414 | n.-244G>T | upstream_gene_variant | 0.14 |
rrl | 1474476 | n.819C>A | non_coding_transcript_exon_variant | 0.22 |
rrl | 1474484 | n.827C>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474869 | n.1212G>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.22 |
inhA | 1673700 | c.-502C>T | upstream_gene_variant | 0.2 |
fabG1 | 1674139 | p.Gly234Arg | missense_variant | 0.5 |
inhA | 1674210 | c.9A>C | synonymous_variant | 0.87 |
inhA | 1674300 | c.99C>A | synonymous_variant | 0.14 |
inhA | 1674413 | c.214delG | frameshift_variant | 0.22 |
inhA | 1674855 | c.654C>A | synonymous_variant | 0.5 |
rpsA | 1833443 | c.-99C>A | upstream_gene_variant | 0.18 |
rpsA | 1833584 | p.Asp15Asn | missense_variant | 0.15 |
rpsA | 1834003 | p.Glu154Asp | missense_variant | 0.22 |
rpsA | 1834177 | c.636A>C | synonymous_variant | 0.88 |
rpsA | 1834309 | c.768C>T | synonymous_variant | 0.18 |
rpsA | 1834407 | p.Arg289His | missense_variant | 0.33 |
tlyA | 1917793 | c.-147A>G | upstream_gene_variant | 0.22 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2101690 | c.1353G>A | synonymous_variant | 0.5 |
ndh | 2102162 | p.Arg294Leu | missense_variant | 0.22 |
ndh | 2102175 | p.Ala290Ser | missense_variant | 0.22 |
ndh | 2102413 | c.630G>T | synonymous_variant | 0.18 |
ndh | 2103081 | c.-39A>G | upstream_gene_variant | 0.13 |
ndh | 2103092 | c.-50T>C | upstream_gene_variant | 0.15 |
ndh | 2103158 | c.-116C>T | upstream_gene_variant | 0.17 |
ndh | 2103176 | c.-134G>T | upstream_gene_variant | 0.2 |
ndh | 2103234 | c.-192G>A | upstream_gene_variant | 0.25 |
katG | 2154099 | c.2013G>A | synonymous_variant | 0.5 |
katG | 2154421 | p.Thr564Met | missense_variant | 0.25 |
katG | 2154658 | p.Gly485Asp | missense_variant | 0.25 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
katG | 2155308 | c.804C>A | synonymous_variant | 0.17 |
katG | 2155722 | c.390G>T | synonymous_variant | 0.4 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2167931 | c.2682C>A | synonymous_variant | 0.12 |
PPE35 | 2168108 | c.2503_2504delAC | frameshift_variant | 0.14 |
PPE35 | 2168235 | p.Ala793Glu | missense_variant | 0.5 |
PPE35 | 2168920 | p.Val565Ile | missense_variant | 0.12 |
PPE35 | 2169091 | p.Val508Leu | missense_variant | 0.14 |
PPE35 | 2170011 | p.Arg201Leu | missense_variant | 0.4 |
PPE35 | 2170325 | c.287delA | frameshift_variant | 0.29 |
PPE35 | 2170405 | p.Ala70Thr | missense_variant | 0.25 |
PPE35 | 2170608 | p.His2Pro | missense_variant | 0.12 |
Rv1979c | 2222845 | p.Gly107Val | missense_variant | 0.18 |
Rv1979c | 2222863 | p.Thr101Ile | missense_variant | 0.13 |
Rv1979c | 2223287 | c.-123G>A | upstream_gene_variant | 0.14 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289505 | c.-264G>T | upstream_gene_variant | 0.12 |
pncA | 2289784 | c.-543C>A | upstream_gene_variant | 0.29 |
pncA | 2289904 | c.-663G>A | upstream_gene_variant | 0.12 |
kasA | 2518182 | p.Thr23Met | missense_variant | 0.25 |
kasA | 2518239 | p.Gly42Asp | missense_variant | 0.2 |
kasA | 2518729 | c.615G>A | synonymous_variant | 0.33 |
kasA | 2519143 | c.1029G>T | synonymous_variant | 0.29 |
kasA | 2519168 | p.Ala352Ser | missense_variant | 0.2 |
eis | 2714334 | c.999C>A | synonymous_variant | 0.2 |
eis | 2714575 | p.Trp253* | stop_gained | 0.2 |
eis | 2715280 | p.Leu18Pro | missense_variant | 0.17 |
ahpC | 2726252 | c.60C>A | synonymous_variant | 0.13 |
ahpC | 2726260 | p.Leu23Arg | missense_variant | 0.13 |
ahpC | 2726338 | p.Val49Gly | missense_variant | 0.24 |
folC | 2747436 | p.Asp55Tyr | missense_variant | 0.2 |
folC | 2747590 | c.9G>T | synonymous_variant | 0.29 |
pepQ | 2860353 | p.Met22Ile | missense_variant | 0.15 |
ribD | 2987207 | c.369C>T | synonymous_variant | 0.25 |
ribD | 2987281 | p.Val148Ala | missense_variant | 0.4 |
ribD | 2987537 | p.Gln233His | missense_variant | 0.29 |
Rv2752c | 3064536 | c.1656G>A | synonymous_variant | 0.15 |
Rv2752c | 3064585 | p.Thr536Lys | missense_variant | 0.18 |
Rv2752c | 3064635 | c.1557G>C | synonymous_variant | 0.11 |
Rv2752c | 3065079 | p.His371Gln | missense_variant | 0.5 |
Rv2752c | 3065631 | c.561C>A | synonymous_variant | 0.17 |
Rv2752c | 3065918 | p.Phe92Leu | missense_variant | 0.15 |
Rv2752c | 3065929 | p.Gly88Val | missense_variant | 0.2 |
Rv2752c | 3067074 | c.-883C>A | upstream_gene_variant | 0.18 |
thyX | 3068035 | c.-90G>T | upstream_gene_variant | 0.14 |
thyX | 3068073 | c.-128C>A | upstream_gene_variant | 0.12 |
thyA | 3073932 | p.Ser180Arg | missense_variant | 0.2 |
thyA | 3074373 | p.Gln33His | missense_variant | 0.17 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ald | 3087083 | c.264G>T | synonymous_variant | 0.29 |
ald | 3087302 | c.483C>T | synonymous_variant | 0.33 |
fbiD | 3338952 | c.-166C>A | upstream_gene_variant | 0.17 |
fbiD | 3338963 | c.-155C>A | upstream_gene_variant | 0.15 |
fbiD | 3339161 | p.Ala15Val | missense_variant | 0.29 |
fbiD | 3339193 | p.Leu26Met | missense_variant | 0.5 |
fbiD | 3339243 | p.Met42Ile | missense_variant | 0.22 |
fbiD | 3339608 | p.Pro164Arg | missense_variant | 0.4 |
fbiD | 3339619 | p.Ala168Ser | missense_variant | 0.38 |
Rv3083 | 3448367 | c.-137G>T | upstream_gene_variant | 0.67 |
Rv3083 | 3448435 | c.-69G>T | upstream_gene_variant | 0.15 |
Rv3083 | 3448508 | p.Asn2Ser | missense_variant | 0.12 |
Rv3083 | 3448634 | p.Thr44Asn | missense_variant | 0.22 |
Rv3083 | 3448660 | p.Val53Leu | missense_variant | 0.33 |
Rv3083 | 3448723 | p.Val74Leu | missense_variant | 0.13 |
Rv3083 | 3448955 | p.Pro151Gln | missense_variant | 0.15 |
Rv3083 | 3448976 | p.Arg158Pro | missense_variant | 0.22 |
Rv3083 | 3449442 | c.939G>A | synonymous_variant | 0.14 |
Rv3083 | 3449718 | c.1215C>T | synonymous_variant | 0.67 |
Rv3083 | 3449726 | p.Arg408Gln | missense_variant | 0.67 |
Rv3083 | 3449792 | p.Ala430Val | missense_variant | 0.22 |
fprA | 3473852 | c.-155G>T | upstream_gene_variant | 0.2 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474154 | p.Arg50Cys | missense_variant | 0.2 |
fprA | 3474887 | p.Leu294Arg | missense_variant | 0.25 |
whiB7 | 3568433 | p.Arg83Ser | missense_variant | 0.33 |
Rv3236c | 3612286 | c.830dupG | frameshift_variant | 0.15 |
Rv3236c | 3612813 | p.Thr102Ala | missense_variant | 1.0 |
fbiA | 3640942 | p.Asp134His | missense_variant | 0.15 |
fbiA | 3641440 | p.Gly300Trp | missense_variant | 0.2 |
fbiB | 3641625 | p.Ala31Thr | missense_variant | 0.8 |
fbiB | 3641707 | p.Gly58Val | missense_variant | 0.2 |
fbiB | 3641727 | p.Glu65* | stop_gained | 0.15 |
fbiB | 3642272 | c.738C>T | synonymous_variant | 0.4 |
fbiB | 3642647 | c.1113C>T | synonymous_variant | 0.29 |
fbiB | 3642828 | p.Pro432Ala | missense_variant | 0.25 |
alr | 3840293 | c.1128T>C | synonymous_variant | 0.1 |
alr | 3840342 | p.Gly360Asp | missense_variant | 0.12 |
alr | 3840405 | p.Gly339Ala | missense_variant | 0.25 |
alr | 3841356 | p.Ser22* | stop_gained | 0.15 |
alr | 3841435 | c.-15C>A | upstream_gene_variant | 0.16 |
rpoA | 3877522 | p.Thr329Asn | missense_variant | 0.17 |
rpoA | 3877897 | p.Pro204Gln | missense_variant | 0.5 |
rpoA | 3877914 | c.594C>T | synonymous_variant | 0.18 |
rpoA | 3878263 | p.Ser82Thr | missense_variant | 0.17 |
rpoA | 3878417 | p.Gly31Arg | missense_variant | 0.14 |
ddn | 3986822 | c.-22C>A | upstream_gene_variant | 0.12 |
ddn | 3986964 | p.Phe41Leu | missense_variant | 0.17 |
clpC1 | 4038526 | p.Ile727Val | missense_variant | 0.13 |
clpC1 | 4038747 | p.Arg653His | missense_variant | 0.25 |
clpC1 | 4039402 | p.Lys435Glu | missense_variant | 0.12 |
clpC1 | 4039528 | c.1177C>A | synonymous_variant | 0.12 |
clpC1 | 4039541 | c.1164C>G | synonymous_variant | 0.12 |
clpC1 | 4039544 | c.1161C>T | synonymous_variant | 0.14 |
clpC1 | 4039559 | c.1146C>G | synonymous_variant | 0.22 |
clpC1 | 4039565 | c.1140G>T | synonymous_variant | 0.22 |
clpC1 | 4039570 | p.Met379Leu | missense_variant | 0.22 |
clpC1 | 4039571 | c.1134G>A | synonymous_variant | 0.22 |
clpC1 | 4039574 | p.Ala377Gly | missense_variant | 0.22 |
clpC1 | 4039586 | c.1119G>C | synonymous_variant | 0.4 |
clpC1 | 4039601 | c.1104G>A | synonymous_variant | 0.33 |
clpC1 | 4039610 | c.1095G>C | synonymous_variant | 0.33 |
clpC1 | 4039616 | c.1089G>C | synonymous_variant | 0.33 |
clpC1 | 4039619 | c.1086G>A | synonymous_variant | 0.33 |
clpC1 | 4039622 | c.1083C>T | synonymous_variant | 0.33 |
clpC1 | 4039649 | c.1056G>C | synonymous_variant | 0.11 |
clpC1 | 4039661 | c.1044T>C | synonymous_variant | 0.11 |
clpC1 | 4039739 | c.966C>G | synonymous_variant | 0.12 |
clpC1 | 4039964 | c.741C>G | synonymous_variant | 0.14 |
clpC1 | 4039975 | p.Asp244Asn | missense_variant | 0.12 |
clpC1 | 4039979 | c.726C>G | synonymous_variant | 0.13 |
clpC1 | 4039982 | c.723G>A | synonymous_variant | 0.13 |
clpC1 | 4040015 | c.690G>C | synonymous_variant | 0.12 |
clpC1 | 4040021 | c.684A>T | synonymous_variant | 0.12 |
clpC1 | 4040024 | c.681A>G | synonymous_variant | 0.13 |
clpC1 | 4040033 | c.672G>C | synonymous_variant | 0.17 |
clpC1 | 4040048 | c.657C>T | synonymous_variant | 0.29 |
clpC1 | 4040242 | p.Thr155Ala | missense_variant | 0.18 |
clpC1 | 4040859 | c.-155T>C | upstream_gene_variant | 0.18 |
embC | 4239678 | c.-185C>G | upstream_gene_variant | 0.33 |
embC | 4239812 | c.-51G>A | upstream_gene_variant | 0.15 |
embC | 4240148 | p.Gly96Arg | missense_variant | 0.2 |
embC | 4240600 | c.738G>A | synonymous_variant | 1.0 |
embC | 4241086 | c.1224G>A | synonymous_variant | 0.29 |
embC | 4241424 | p.Arg521Gln | missense_variant | 0.25 |
embC | 4241879 | p.Leu673Val | missense_variant | 0.1 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243290 | p.Ser20Pro | missense_variant | 0.2 |
embA | 4243460 | c.228C>T | synonymous_variant | 1.0 |
embA | 4243465 | p.Ala78Asp | missense_variant | 0.4 |
embA | 4243779 | p.Pro183Ser | missense_variant | 0.29 |
embA | 4244127 | p.Thr299Ala | missense_variant | 0.2 |
embA | 4244343 | p.Ala371Ser | missense_variant | 0.33 |
embA | 4245179 | p.Met649Ile | missense_variant | 0.14 |
embA | 4245182 | c.1950T>C | synonymous_variant | 0.14 |
embA | 4245354 | p.Ala708Ser | missense_variant | 0.2 |
embA | 4245393 | p.Ala721Ser | missense_variant | 0.4 |
embA | 4246446 | p.Ala1072Thr | missense_variant | 0.25 |
embB | 4246939 | c.426C>A | synonymous_variant | 0.17 |
embB | 4247154 | p.Pro214Gln | missense_variant | 0.29 |
embB | 4247331 | p.Trp273Ser | missense_variant | 0.33 |
embB | 4247353 | p.Asp280Glu | missense_variant | 0.14 |
embB | 4247916 | c.1405delC | frameshift_variant | 0.25 |
embB | 4247974 | c.1461C>T | synonymous_variant | 0.25 |
embB | 4247998 | c.1485C>G | synonymous_variant | 0.12 |
embB | 4248278 | p.Pro589Thr | missense_variant | 0.15 |
embB | 4248340 | c.1827G>T | synonymous_variant | 0.17 |
embB | 4248938 | p.Pro809Ser | missense_variant | 0.29 |
embB | 4249703 | p.Leu1064Met | missense_variant | 0.25 |
embB | 4249730 | p.Ala1073Ser | missense_variant | 0.5 |
aftB | 4267439 | c.1398C>A | synonymous_variant | 0.29 |
aftB | 4268266 | p.Leu191Met | missense_variant | 0.5 |
aftB | 4268708 | c.129C>A | synonymous_variant | 0.22 |
aftB | 4268900 | c.-64C>A | upstream_gene_variant | 0.17 |
ubiA | 4268951 | p.Val295Phe | missense_variant | 0.25 |
ubiA | 4269841 | c.-8G>T | upstream_gene_variant | 0.29 |
ethA | 4326712 | p.Gln254His | missense_variant | 0.18 |
ethR | 4327036 | c.-513G>T | upstream_gene_variant | 0.14 |
ethR | 4327444 | c.-105C>A | upstream_gene_variant | 0.2 |
ethR | 4327814 | p.Thr89Asn | missense_variant | 0.15 |
ethR | 4327951 | p.Ala135Ser | missense_variant | 0.15 |
ethA | 4328408 | c.-935C>A | upstream_gene_variant | 0.29 |
whiB6 | 4338242 | p.Gln94Lys | missense_variant | 0.2 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407833 | p.Val124Met | missense_variant | 0.12 |
gid | 4407927 | p.Glu92Asp | missense_variant | 1.0 |
gid | 4407956 | p.Arg83Gly | missense_variant | 0.13 |
gid | 4407980 | p.Pro75Thr | missense_variant | 0.12 |
gid | 4408124 | p.Ala27Thr | missense_variant | 0.33 |