Rv0001 - c.1389C>T


Drug resistance types
126 Sensitive 8 RR-TB 111 HR-TB 72 MDR-TB 4 Pre-XDR-TB 0 XDR-TB 46 Other
lineage Counts
lineage Count
La3;M.canetti;lineage2;lineage4.2;lineage4.3 1
lineage2.2.1 336
lineage4.9 1
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 1
M.canetti;lineage4.2 1
lineage4.2;lineage4.9 2
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 1
lineage2.2.1.1 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 1
lineage2.2.1;lineage2.2.2 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 3
La1.6;La3;M.canetti;lineage4.2;lineage4.9 1
M.canetti;lineage4.2;lineage4.9 1
La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 1
La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
lineage4.2;lineage4.8.1;lineage4.9 2
lineage4.9;lineage6.3 1
lineage1.1.1.1;lineage2.2.1 3
lineage4.1.2.1 1
La1.2.BCG 1
M.canetti;lineage4.6.4;lineage4.9 1
lineage2.2.1;lineage4.9 1
La1.6;La3;M.canetti;lineage4.2.2 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 1
La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 1
spoligotype Counts
spoligotype Count
None 367
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR158583 MDR-TB La3;M.canetti;lineage2;lineage4.2;lineage4.3 None
ERR9119405 Sensitive lineage2.2.1 None
ERR176751 Other lineage4.9 None
SRR14519670 Other lineage2.2.1 None
SRR29051403 HR-TB lineage2.2.1 None
SRR29051416 Sensitive lineage2.2.1 None
SRR26399218 Sensitive lineage2.2.1 None
DRR473959 Sensitive lineage2.2.1 None
SRR27450630 Sensitive lineage2.2.1 None
SRR29017312 HR-TB lineage2.2.1 None
SRR24083611 Sensitive lineage2.2.1 None
SRR5341418 Other La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 None
ERR4828281 HR-TB lineage2.2.1 None
ERR403298 MDR-TB M.canetti;lineage4.2 None
DRR261017 HR-TB lineage2.2.1 None
SRR26400028 HR-TB lineage2.2.1 None
ERR13439873 HR-TB lineage2.2.1 None
SRR29051212 HR-TB lineage2.2.1 None
SRR24083739 Sensitive lineage2.2.1 None
SRR6046026 RR-TB lineage4.2;lineage4.9 None
SRR6397673 Sensitive lineage2.2.1 ca
DRR261031 Other lineage2.2.1 None
SRR26400018 Sensitive lineage2.2.1 None
ERR718280 HR-TB lineage2.2.1 th
ERR7911171 MDR-TB lineage2.2.1 vn
ERR7911329 MDR-TB lineage2.2.1 vn
ERR13439926 RR-TB lineage2.2.1 None
ERR11081478 Other lineage2.2.1 None
ERR502889 Other La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 None
SRR24083639 Sensitive lineage2.2.1 None
SRR26399744 HR-TB lineage2.2.1 None
SRR22249694 Sensitive lineage2.2.1 None
ERR4820402 HR-TB lineage2.2.1 gb
ERR4831900 HR-TB lineage2.2.1 vn
ERR4831912 HR-TB lineage2.2.1 vn
ERR4831931 MDR-TB lineage2.2.1 vn
ERR4831995 HR-TB lineage2.2.1 vn
ERR4831966 HR-TB lineage2.2.1 vn
ERR4831983 HR-TB lineage2.2.1 vn
ERR4831959 HR-TB lineage2.2.1 vn
ERR4830349 Sensitive lineage2.2.1.1 vn
ERR4830421 Other lineage2.2.1 vn
ERR4828759 Sensitive lineage2.2.1 vn
ERR4828711 HR-TB lineage2.2.1 vn
ERR4828190 HR-TB lineage2.2.1 vn
ERR4828224 Sensitive lineage2.2.1 vn
ERR552949 HR-TB lineage2.2.1 de
SRR28858384 Other lineage2.2.1 None
ERR133986 Other La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 None
ERR1035087 MDR-TB lineage2.2.1 vn
SRR5065303 MDR-TB lineage2.2.1 vn
SRR5065585 HR-TB lineage2.2.1 vn
ERR9125463 MDR-TB lineage2.2.1 None
SRR29050818 Sensitive lineage2.2.1 None
ERR13260094 Pre-XDR-TB lineage2.2.1 None
SRR5065397 HR-TB lineage2.2.1 vn
SRR5065380 HR-TB lineage2.2.1 vn
SRR5065658 Sensitive lineage2.2.1 vn
SRR5065377 Other lineage2.2.1 vn
SRR5065581 HR-TB lineage2.2.1 vn
SRR26399972 MDR-TB lineage2.2.1 None
ERR13291596 Sensitive lineage2.2.1 None
SRR5065270 HR-TB lineage2.2.1 vn
SRR5065610 MDR-TB lineage2.2.1 vn
SRR5065600 Sensitive lineage2.2.1 vn
SRR5067704 MDR-TB lineage2.2.1 vn
SRR8217915 Other lineage2.2.1 None
SRR5073809 Sensitive lineage2.2.1;lineage2.2.2 vn
SRR5073618 Other lineage2.2.1 vn
SRR5073992 Sensitive lineage2.2.1 vn
SRR5073776 Sensitive lineage2.2.1 vn
SRR5073951 Sensitive lineage2.2.1 vn
SRR5073714 Sensitive lineage2.2.1 vn
SRR5074166 HR-TB lineage2.2.1 vn
SRR29017265 Sensitive lineage2.2.1 None
ERR067681 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
SRR067479 MDR-TB lineage2.2.1 None
SRR21732616 Sensitive lineage2.2.1 None
SRR26399328 Sensitive lineage2.2.1 None
ERR11067429 Sensitive lineage2.2.1 None
ERR4831719 RR-TB lineage2.2.1 None
SRR22250182 Sensitive lineage2.2.1 None
SRR26558620 MDR-TB lineage2.2.1 None
ERR5311079 Other La1.6;La3;M.canetti;lineage4.2;lineage4.9 None
SRR17729407 HR-TB lineage2.2.1 None
SRR3675550 RR-TB M.canetti;lineage4.2;lineage4.9 None
SRR29050844 HR-TB lineage2.2.1 None
SRR29051402 Sensitive lineage2.2.1 None
SRR24083721 Sensitive lineage2.2.1 None
ERR5311103 RR-TB La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 None
ERR9119347 HR-TB lineage2.2.1 None
SRR29050849 HR-TB lineage2.2.1 None
SRR29050847 HR-TB lineage2.2.1 None
SRR29016937 HR-TB lineage2.2.1 None
ERR13291845 Sensitive lineage2.2.1 None
ERR4831616 MDR-TB lineage2.2.1 None
DRR261081 Other lineage2.2.1 None
ERR9119433 HR-TB lineage2.2.1 None
ERR13276275 MDR-TB lineage2.2.1 None
ERR9119368 Other lineage2.2.1 None
SRR27450463 HR-TB lineage2.2.1 None
SRR26399233 HR-TB lineage2.2.1 None
SRR16058688 MDR-TB lineage2.2.1 None
SRR29050654 HR-TB lineage2.2.1 None
ERR5311091 Other La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
SRR29051415 HR-TB lineage2.2.1 None
ERR294266 HR-TB lineage4.2;lineage4.8.1;lineage4.9 None
SRR26937145 MDR-TB lineage2.2.1 None
SRR29050809 Sensitive lineage2.2.1 None
SRR5065365 Sensitive lineage2.2.1 vn
SRR28868748 HR-TB lineage2.2.1 None
SRR26399619 MDR-TB lineage2.2.1 None
ERR212121 HR-TB lineage4.9;lineage6.3 None
SRR29017488 HR-TB lineage2.2.1 None
SRR26399691 HR-TB lineage2.2.1 None
ERR9119284 Sensitive lineage2.2.1 None
SRR26558629 HR-TB lineage2.2.1 None
SRR26399281 HR-TB lineage2.2.1 None
SRR26399633 Other lineage2.2.1 None
ERR4828437 Sensitive lineage2.2.1 None
SRR29050827 Sensitive lineage2.2.1 None
SRR26399412 Sensitive lineage2.2.1 None
SRR5065483 Sensitive lineage2.2.1 None
SRR29051193 MDR-TB lineage1.1.1.1;lineage2.2.1 None
SRR28858422 MDR-TB lineage2.2.1 None
SRR26399459 Sensitive lineage2.2.1 None
SRR26936943 MDR-TB lineage2.2.1 None
ERR7737719 MDR-TB lineage2.2.1 None
SRR29017518 Sensitive lineage2.2.1 None
SRR26937020 MDR-TB lineage2.2.1 None
SRR29017474 Sensitive lineage2.2.1 None
SRR26399891 HR-TB lineage2.2.1 None
SRR26936924 HR-TB lineage2.2.1 None
SRR6045785 MDR-TB lineage4.2;lineage4.8.1;lineage4.9 None
ERR11080827 Sensitive lineage4.1.2.1 None
SRR27450150 HR-TB lineage2.2.1 None
SRR29050785 MDR-TB lineage2.2.1 None
ERR4798262 HR-TB La1.2.BCG None
SRR21732431 Sensitive lineage2.2.1 None
SRR16058248 Sensitive lineage2.2.1 None
ERR718241 MDR-TB lineage2.2.1 th
SRR6397390 Sensitive lineage2.2.1 ca
SRR26399184 Other lineage2.2.1 None
SRR26399969 Sensitive lineage2.2.1 None
SRR6397343 Sensitive lineage2.2.1 ca
ERR7911132 RR-TB lineage2.2.1 vn
ERR7911141 MDR-TB lineage2.2.1 vn
ERR7911318 MDR-TB lineage2.2.1 vn
ERR7911309 MDR-TB lineage2.2.1 vn
ERR7911502 MDR-TB lineage2.2.1 vn
ERR4828420 Sensitive lineage2.2.1 None
ERR7737814 MDR-TB lineage2.2.1 None
ERR9119293 HR-TB lineage2.2.1 None
SRR6397493 Sensitive lineage2.2.1 ca
ERR4831760 MDR-TB lineage2.2.1 vn
ERR4831797 MDR-TB lineage2.2.1 vn
ERR4831707 HR-TB lineage2.2.1 vn
ERR4831853 MDR-TB lineage2.2.1 vn
ERR4831941 MDR-TB lineage2.2.1 vn
ERR4831748 HR-TB lineage2.2.1 vn
ERR4831755 HR-TB lineage2.2.1 vn
ERR4832051 HR-TB lineage2.2.1 vn
ERR4831774 HR-TB lineage2.2.1 vn
ERR4830380 HR-TB lineage2.2.1 vn
ERR4830393 HR-TB lineage2.2.1 vn
ERR4830388 Sensitive lineage2.2.1 vn
ERR4830395 Sensitive lineage2.2.1 vn
ERR4830423 Sensitive lineage2.2.1 vn
ERR4830457 HR-TB lineage2.2.1 vn
ERR4830403 HR-TB lineage2.2.1 vn
ERR4828615 Sensitive lineage2.2.1 vn
ERR4828634 HR-TB lineage2.2.1 vn
ERR4828730 Sensitive lineage2.2.1 vn
ERR4828756 HR-TB lineage2.2.1 vn
ERR4828703 MDR-TB lineage2.2.1 vn
ERR4828725 Sensitive lineage2.2.1 vn
ERR4828631 HR-TB lineage2.2.1 vn
ERR4831625 MDR-TB lineage2.2.1 vn
ERR4831650 MDR-TB lineage2.2.1 vn
ERR4831658 MDR-TB lineage2.2.1 vn
ERR4831643 RR-TB lineage2.2.1 vn
ERR11043438 Pre-XDR-TB lineage2.2.1 None
SRR26399484 Other lineage2.2.1 None
SRR22250127 HR-TB lineage2.2.1 None
ERR3439432 Other M.canetti;lineage4.6.4;lineage4.9 None
SRR26399579 HR-TB lineage2.2.1 None
SRR27450467 Sensitive lineage2.2.1 None
SRR29017277 MDR-TB lineage2.2.1 None
SRR5065612 Sensitive lineage2.2.1 vn
ERR9119398 HR-TB lineage2.2.1 None
SRR5065400 HR-TB lineage2.2.1 vn
SRR5067531 Other lineage2.2.1 vn
SRR5067354 HR-TB lineage2.2.1 vn
SRR5067432 Sensitive lineage2.2.1 vn
SRR5067311 Sensitive lineage2.2.1 vn
ERR2677464 MDR-TB lineage2.2.1 de
SRR5067640 Sensitive lineage2.2.1 vn
SRR5067244 HR-TB lineage2.2.1 vn
SRR5073713 Sensitive lineage2.2.1 vn
SRR5073506 HR-TB lineage2.2.1 vn
SRR5073537 Other lineage2.2.1 vn
SRR5073868 HR-TB lineage2.2.1 vn
ERR11069114 MDR-TB lineage2.2.1 None
SRR5073997 Sensitive lineage2.2.1 vn
SRR5073521 MDR-TB lineage2.2.1 vn
SRR5073909 HR-TB lineage2.2.1 vn
SRR5073777 Sensitive lineage2.2.1 vn
SRR5073536 Sensitive lineage2.2.1 vn
SRR5074163 Sensitive lineage2.2.1 vn
SRR5074096 Other lineage2.2.1 vn
SRR26936964 HR-TB lineage2.2.1;lineage4.9 None
ERR4831744 MDR-TB lineage2.2.1 None
SRR26399420 HR-TB lineage2.2.1 None
DRR261118 Other lineage2.2.1 None
ERR2843504 Other lineage2.2.1 None
SRR26399786 Other lineage2.2.1 None
SRR11662696 MDR-TB La1.6;La3;M.canetti;lineage4.2.2 None
SRR26399816 Sensitive lineage2.2.1 None
ERR9119429 Sensitive lineage2.2.1 None
ERR9119399 HR-TB lineage2.2.1 None
SRR26937123 MDR-TB lineage2.2.1 None
ERR7737672 MDR-TB lineage2.2.1 None
ERR2843505 HR-TB lineage2.2.1 None
SRR27450631 Other lineage2.2.1 None
ERR9119271 Sensitive lineage2.2.1 None
SRR29050769 HR-TB lineage2.2.1 None
ERR13281463 Pre-XDR-TB lineage2.2.1 None
SRR26399571 Sensitive lineage2.2.1 None
SRR19325555 Sensitive lineage2.2.1 None
ERR4815213 HR-TB lineage2.2.1 None
SRR16370415 HR-TB lineage2.2.1 None
SRR29051419 Sensitive lineage2.2.1 None
DRR261119 MDR-TB lineage2.2.1 None
SRR29050987 HR-TB lineage2.2.1 None
SRR8217893 HR-TB lineage2.2.1 None
DRR261062 HR-TB lineage2.2.1 None
ERR13439865 HR-TB lineage2.2.1 None
SRR24083697 Sensitive lineage2.2.1 None
SRR29016727 Sensitive lineage2.2.1 None
SRR29051002 Sensitive lineage2.2.1 None
SRR26399254 HR-TB lineage2.2.1 None
SRR21733095 Other lineage2.2.1 None
ERR11068032 Sensitive lineage2.2.1 None
SRR26937015 Pre-XDR-TB lineage2.2.1 None
SRR26399290 Sensitive lineage2.2.1 None
SRR27450458 Sensitive lineage2.2.1 None
SRR26399391 Other lineage2.2.1 None
SRR27450332 Sensitive lineage2.2.1 None
ERR9119204 Other lineage2.2.1 None
SRR28858388 Sensitive lineage2.2.1 None
SRR067560 MDR-TB lineage2.2.1 None
SRR6046824 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
ERR4828514 HR-TB lineage2.2.1 None
ERR7737860 MDR-TB lineage2.2.1 None
SRR26937007 MDR-TB lineage2.2.1 None
SRR26399497 HR-TB lineage2.2.1 None
SRR26399977 HR-TB lineage2.2.1 None
SRR28859826 Sensitive lineage2.2.1 None
ERR13276271 MDR-TB lineage2.2.1 None
SRR29053236 Sensitive lineage2.2.1 None
SRR26400060 HR-TB lineage2.2.1 None
SRR26399904 HR-TB lineage2.2.1 None
SRR29016912 Sensitive lineage2.2.1 None
SRR29051107 Sensitive lineage2.2.1 None
ERR4828439 Sensitive lineage2.2.1 None
ERR4828772 HR-TB lineage2.2.1 None
ERR7737768 MDR-TB lineage2.2.1 None
SRR26399784 Sensitive lineage2.2.1 None
SRR29051138 Sensitive lineage2.2.1 None
SRR26399465 Other lineage2.2.1 None
ERR9119424 Sensitive lineage2.2.1 None
SRR6480606 Sensitive lineage2.2.1 None
SRR26399494 Other lineage1.1.1.1;lineage2.2.1 None
SRR16097559 Sensitive lineage2.2.1 None
SRR3675390 Other La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
SRR26399318 HR-TB lineage2.2.1 None
ERR13439860 HR-TB lineage2.2.1 None
ERR7911305 MDR-TB lineage2.2.1 vn
ERR7911481 MDR-TB lineage2.2.1 vn
ERR7911490 MDR-TB lineage2.2.1 vn
SRR6046295 HR-TB lineage4.2;lineage4.9 None
SRR067497 MDR-TB lineage2.2.1 None
ERR4830237 Sensitive lineage2.2.1 vn
ERR4830301 Sensitive lineage2.2.1 vn
ERR4830338 HR-TB lineage2.2.1 vn
ERR4830229 HR-TB lineage2.2.1 vn
ERR4830228 Sensitive lineage2.2.1 vn
ERR4830279 Other lineage2.2.1 vn
ERR4828352 Other lineage2.2.1 vn
ERR4828377 HR-TB lineage2.2.1 vn
ERR4828442 Sensitive lineage2.2.1 vn
ERR4828496 HR-TB lineage2.2.1 vn
ERR4828463 HR-TB lineage2.2.1 vn
ERR4828531 HR-TB lineage2.2.1 vn
ERR4828444 MDR-TB lineage1.1.1.1;lineage2.2.1 vn
ERR4828457 Sensitive lineage2.2.1 vn
ERR4828483 Sensitive lineage2.2.1 vn
ERR4828470 Sensitive lineage2.2.1 vn
ERR4828522 Sensitive lineage2.2.1 vn
ERR4828527 HR-TB lineage2.2.1 vn
ERR4828297 MDR-TB lineage2.2.1 None
SRR5073925 Sensitive lineage2.2.1 None
SRR29441023 HR-TB lineage2.2.1 None
SRR26936955 MDR-TB lineage2.2.1 None
SRR5065433 Sensitive lineage2.2.1 vn
SRR5065424 Other lineage2.2.1 vn
SRR16370543 MDR-TB lineage2.2.1 None
SRR26937103 MDR-TB lineage2.2.1 None
SRR27450149 HR-TB lineage2.2.1 None
SRR26399468 HR-TB lineage2.2.1 None
SRR5065373 Sensitive lineage2.2.1 vn
SRR5065634 Sensitive lineage2.2.1 vn
SRR21690798 Sensitive lineage2.2.1 None
SRR5065224 Sensitive lineage2.2.1 vn
SRR5067297 Sensitive lineage2.2.1 vn
SRR5067399 HR-TB lineage2.2.1 vn
SRR5067286 Sensitive lineage2.2.1 vn
SRR5067416 Sensitive lineage2.2.1 vn
SRR5067496 Other lineage2.2.1 vn
SRR5067460 Sensitive lineage2.2.1 vn
SRR5073610 Other lineage2.2.1 vn
SRR5073662 Sensitive lineage2.2.1 vn
ERR9119361 Sensitive lineage2.2.1 None
SRR5073942 Sensitive lineage2.2.1 vn
SRR5073779 Sensitive lineage2.2.1 vn
SRR5073964 Other lineage2.2.1 vn
SRR5073723 HR-TB lineage2.2.1 vn
SRR5073852 Sensitive lineage2.2.1 vn
SRR5073655 Sensitive lineage2.2.1 vn
SRR5073794 HR-TB lineage2.2.1 vn
SRR5073673 HR-TB lineage2.2.1 vn
SRR5073677 Other lineage2.2.1 vn
SRR21732280 Sensitive lineage2.2.1 None
ERR9119438 HR-TB lineage2.2.1 None
SRR26399857 Sensitive lineage2.2.1 None
SRR26399399 HR-TB lineage2.2.1 None
ERR7737913 MDR-TB lineage2.2.1 None
ERR4831889 HR-TB lineage2.2.1 None
SRR28409654 Sensitive lineage2.2.1 None
SRR26400083 Other lineage2.2.1 None
ERR4828749 Sensitive lineage2.2.1 None
SRR16370515 RR-TB lineage2.2.1 None
SRR22249622 Sensitive lineage2.2.1 None
ERR7737803 MDR-TB lineage2.2.1 None
DRR261185 Other lineage2.2.1 None
SRR26399692 Sensitive lineage2.2.1 None
SRR26936935 MDR-TB lineage2.2.1 None
SRR16370669 MDR-TB lineage2.2.1 None
SRR29050773 HR-TB lineage2.2.1 None
SRR6046482 Other La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
SRR26399310 Sensitive lineage2.2.1 None
SRR21732052 Sensitive lineage2.2.1 None
SRR29016759 Other lineage2.2.1 None
SRR26399616 Other lineage2.2.1 None
SRR22249801 Sensitive lineage2.2.1 None
ERR9125903 Sensitive lineage2.2.1 None
SRR26399161 MDR-TB lineage2.2.1 None
ERR1035162 Other M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 None
SRR29267197 Sensitive lineage2.2.1 None
ERR4798406 MDR-TB La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 None
ERR7737839 MDR-TB lineage2.2.1 None
DRR261192 HR-TB lineage2.2.1 None
SRR26399815 Sensitive lineage2.2.1 None
ERR4276895 MDR-TB lineage2.2.1 None
SRR27450456 HR-TB lineage2.2.1 None
SRR26399510 HR-TB lineage2.2.1 None
SRR26399914 Sensitive lineage2.2.1 None