Rv0001 - c.1389C>T


Drug resistance types
113 Sensitive 8 RR-TB 101 HR-TB 67 MDR-TB 3 Pre-XDR-TB 0 XDR-TB 46 Other
lineage Counts
lineage Count
M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 1
lineage2.2.1 307
lineage4.9;lineage6.3 1
lineage4.9 1
lineage4.2;lineage4.8.1;lineage4.9 2
lineage4.1.2.1 1
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 1
lineage4.2;lineage4.9 2
lineage1.1.1.1;lineage2.2.1 3
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 3
lineage2.2.1;lineage2.2.2 1
La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
La3;M.canetti;lineage2;lineage4.2;lineage4.3 1
M.canetti;lineage4.2 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 1
lineage2.2.1;lineage4.9 1
La1.6;La3;M.canetti;lineage4.2.2 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
lineage2.2.1.1 1
La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 1
La1.2.BCG 1
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 1
M.canetti;lineage4.6.4;lineage4.9 1
La1.6;La3;M.canetti;lineage4.2;lineage4.9 1
M.canetti;lineage4.2;lineage4.9 1
La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 1
spoligotype Counts
spoligotype Count
None 338
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR1035162 Other M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 None
ERR7737839 MDR-TB lineage2.2.1 None
SRR26399619 MDR-TB lineage2.2.1 None
ERR212121 HR-TB lineage4.9;lineage6.3 None
SRR26399815 Sensitive lineage2.2.1 None
ERR4830380 HR-TB lineage2.2.1 vn
ERR4276895 MDR-TB lineage2.2.1 None
SRR21733095 Other lineage2.2.1 None
ERR9119284 Sensitive lineage2.2.1 None
SRR5073677 Other lineage2.2.1 vn
SRR5073776 Sensitive lineage2.2.1 vn
SRR27450458 Sensitive lineage2.2.1 None
SRR27450332 Sensitive lineage2.2.1 None
SRR5065270 HR-TB lineage2.2.1 vn
ERR7911490 MDR-TB lineage2.2.1 vn
SRR067560 MDR-TB lineage2.2.1 None
ERR9119405 Sensitive lineage2.2.1 None
ERR7737860 MDR-TB lineage2.2.1 None
SRR26937007 MDR-TB lineage2.2.1 None
ERR176751 Other lineage4.9 None
SRR26937020 MDR-TB lineage2.2.1 None
ERR13439873 HR-TB lineage2.2.1 None
SRR26399497 HR-TB lineage2.2.1 None
ERR4828224 Sensitive lineage2.2.1 vn
SRR29051403 HR-TB lineage2.2.1 None
SRR29051212 HR-TB lineage2.2.1 None
SRR26399904 HR-TB lineage2.2.1 None
ERR4828442 Sensitive lineage2.2.1 vn
ERR4828439 Sensitive lineage2.2.1 None
ERR4828772 HR-TB lineage2.2.1 None
ERR7737768 MDR-TB lineage2.2.1 None
SRR6045785 MDR-TB lineage4.2;lineage4.8.1;lineage4.9 None
ERR11080827 Sensitive lineage4.1.2.1 None
SRR27450150 HR-TB lineage2.2.1 None
SRR5073506 HR-TB lineage2.2.1 vn
SRR5073992 Sensitive lineage2.2.1 vn
SRR5341418 Other La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 None
SRR29017312 HR-TB lineage2.2.1 None
DRR261017 HR-TB lineage2.2.1 None
ERR4828377 HR-TB lineage2.2.1 vn
SRR21732431 Sensitive lineage2.2.1 None
SRR16058248 Sensitive lineage2.2.1 None
SRR5073714 Sensitive lineage2.2.1 vn
SRR26400018 Sensitive lineage2.2.1 None
SRR26399184 Other lineage2.2.1 None
SRR5067354 HR-TB lineage2.2.1 vn
ERR11081478 Other lineage2.2.1 None
SRR29051107 Sensitive lineage2.2.1 None
ERR4828420 Sensitive lineage2.2.1 None
ERR4828730 Sensitive lineage2.2.1 vn
ERR4831983 HR-TB lineage2.2.1 vn
SRR6046295 HR-TB lineage4.2;lineage4.9 None
SRR29016759 Other lineage2.2.1 None
ERR2677464 MDR-TB lineage2.2.1 de
ERR4830228 Sensitive lineage2.2.1 vn
ERR4831625 MDR-TB lineage2.2.1 vn
ERR7911318 MDR-TB lineage2.2.1 vn
SRR5073925 Sensitive lineage2.2.1 None
SRR5065303 MDR-TB lineage2.2.1 vn
SRR5065380 HR-TB lineage2.2.1 vn
SRR5073618 Other lineage2.2.1 vn
SRR29441023 HR-TB lineage2.2.1 None
SRR5065373 Sensitive lineage2.2.1 vn
SRR5067399 HR-TB lineage2.2.1 vn
SRR26936955 MDR-TB lineage2.2.1 None
ERR4828352 Other lineage2.2.1 vn
ERR4828444 MDR-TB lineage1.1.1.1;lineage2.2.1 vn
SRR29050818 Sensitive lineage2.2.1 None
SRR21690798 Sensitive lineage2.2.1 None
ERR4831707 HR-TB lineage2.2.1 vn
SRR5065600 Sensitive lineage2.2.1 vn
SRR5065400 HR-TB lineage2.2.1 vn
SRR5073942 Sensitive lineage2.2.1 vn
ERR9119361 Sensitive lineage2.2.1 None
ERR4828483 Sensitive lineage2.2.1 vn
SRR5073536 Sensitive lineage2.2.1 vn
SRR5074166 HR-TB lineage2.2.1 vn
SRR5065397 HR-TB lineage2.2.1 vn
SRR5074163 Sensitive lineage2.2.1 vn
ERR067681 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
ERR718241 MDR-TB lineage2.2.1 th
SRR067479 MDR-TB lineage2.2.1 None
SRR26399328 Sensitive lineage2.2.1 None
ERR4828759 Sensitive lineage2.2.1 vn
ERR4831719 RR-TB lineage2.2.1 None
ERR4831748 HR-TB lineage2.2.1 vn
ERR9119399 HR-TB lineage2.2.1 None
SRR26937123 MDR-TB lineage2.2.1 None
DRR261185 Other lineage2.2.1 None
SRR26399692 Sensitive lineage2.2.1 None
ERR7911481 MDR-TB lineage2.2.1 vn
ERR4830388 Sensitive lineage2.2.1 vn
DRR261081 Other lineage2.2.1 None
SRR26399571 Sensitive lineage2.2.1 None
ERR4828457 Sensitive lineage2.2.1 vn
ERR4830301 Sensitive lineage2.2.1 vn
ERR4830421 Other lineage2.2.1 vn
ERR9119368 Other lineage2.2.1 None
SRR26936935 MDR-TB lineage2.2.1 None
ERR4815213 HR-TB lineage2.2.1 None
SRR16370415 HR-TB lineage2.2.1 None
SRR5067460 Sensitive lineage2.2.1 vn
SRR5073809 Sensitive lineage2.2.1;lineage2.2.2 vn
SRR5074096 Other lineage2.2.1 vn
SRR6397390 Sensitive lineage2.2.1 ca
SRR26399310 Sensitive lineage2.2.1 None
SRR21732052 Sensitive lineage2.2.1 None
ERR5311091 Other La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
SRR22249801 Sensitive lineage2.2.1 None
DRR261119 MDR-TB lineage2.2.1 None
SRR5073521 MDR-TB lineage2.2.1 vn
SRR5073868 HR-TB lineage2.2.1 vn
SRR5073909 HR-TB lineage2.2.1 vn
DRR261192 HR-TB lineage2.2.1 None
ERR4830423 Sensitive lineage2.2.1 vn
ERR4828297 MDR-TB lineage2.2.1 None
ERR11068032 Sensitive lineage2.2.1 None
SRR26558629 HR-TB lineage2.2.1 None
ERR7911329 MDR-TB lineage2.2.1 vn
SRR26399914 Sensitive lineage2.2.1 None
ERR9119204 Other lineage2.2.1 None
ERR7911141 MDR-TB lineage2.2.1 vn
ERR4828190 HR-TB lineage2.2.1 vn
ERR4828463 HR-TB lineage2.2.1 vn
ERR158583 MDR-TB La3;M.canetti;lineage2;lineage4.2;lineage4.3 None
SRR26399459 Sensitive lineage2.2.1 None
SRR26936943 MDR-TB lineage2.2.1 None
SRR26399977 HR-TB lineage2.2.1 None
SRR5065585 HR-TB lineage2.2.1 vn
SRR5073951 Sensitive lineage2.2.1 vn
ERR7911305 MDR-TB lineage2.2.1 vn
ERR7911171 MDR-TB lineage2.2.1 vn
SRR6397673 Sensitive lineage2.2.1 ca
SRR5073723 HR-TB lineage2.2.1 vn
SRR26399891 HR-TB lineage2.2.1 None
SRR5065433 Sensitive lineage2.2.1 vn
ERR4828281 HR-TB lineage2.2.1 None
ERR403298 MDR-TB M.canetti;lineage4.2 None
ERR9119424 Sensitive lineage2.2.1 None
ERR4830279 Other lineage2.2.1 vn
SRR5067311 Sensitive lineage2.2.1 vn
ERR4831941 MDR-TB lineage2.2.1 vn
SRR6480606 Sensitive lineage2.2.1 None
DRR261031 Other lineage2.2.1 None
ERR13439860 HR-TB lineage2.2.1 None
ERR13439865 HR-TB lineage2.2.1 None
ERR13439926 RR-TB lineage2.2.1 None
SRR24083639 Sensitive lineage2.2.1 None
SRR26399744 HR-TB lineage2.2.1 None
SRR22249694 Sensitive lineage2.2.1 None
ERR4831797 MDR-TB lineage2.2.1 vn
ERR552949 HR-TB lineage2.2.1 de
ERR9119293 HR-TB lineage2.2.1 None
ERR11043438 Pre-XDR-TB lineage2.2.1 None
ERR4828470 Sensitive lineage2.2.1 vn
SRR28858384 Other lineage2.2.1 None
ERR133986 Other La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 None
ERR4820402 HR-TB lineage2.2.1 gb
ERR4830338 HR-TB lineage2.2.1 vn
SRR26937103 MDR-TB lineage2.2.1 None
SRR27450149 HR-TB lineage2.2.1 None
SRR26399468 HR-TB lineage2.2.1 None
SRR29017277 MDR-TB lineage2.2.1 None
ERR13260094 Pre-XDR-TB lineage2.2.1 None
SRR5073537 Other lineage2.2.1 vn
SRR5073713 Sensitive lineage2.2.1 vn
ERR11069114 MDR-TB lineage2.2.1 None
SRR29051193 MDR-TB lineage1.1.1.1;lineage2.2.1 None
ERR4828725 Sensitive lineage2.2.1 vn
SRR26936964 HR-TB lineage2.2.1;lineage4.9 None
ERR9119438 HR-TB lineage2.2.1 None
SRR26399857 Sensitive lineage2.2.1 None
ERR4831744 MDR-TB lineage2.2.1 None
ERR4831853 MDR-TB lineage2.2.1 vn
ERR4831650 MDR-TB lineage2.2.1 vn
SRR26399399 HR-TB lineage2.2.1 None
SRR21732616 Sensitive lineage2.2.1 None
DRR261118 Other lineage2.2.1 None
ERR11067429 Sensitive lineage2.2.1 None
SRR29051138 Sensitive lineage2.2.1 None
ERR4830403 HR-TB lineage2.2.1 vn
ERR2843504 Other lineage2.2.1 None
SRR28868748 HR-TB lineage2.2.1 None
SRR22250182 Sensitive lineage2.2.1 None
SRR29017488 HR-TB lineage2.2.1 None
SRR26399786 Other lineage2.2.1 None
SRR5073997 Sensitive lineage2.2.1 vn
SRR11662696 MDR-TB La1.6;La3;M.canetti;lineage4.2.2 None
ERR4830237 Sensitive lineage2.2.1 vn
ERR7737913 MDR-TB lineage2.2.1 None
ERR4831889 HR-TB lineage2.2.1 None
SRR26399816 Sensitive lineage2.2.1 None
SRR5065424 Other lineage2.2.1 vn
SRR5065634 Sensitive lineage2.2.1 vn
SRR5067704 MDR-TB lineage2.2.1 vn
ERR4828615 Sensitive lineage2.2.1 vn
SRR5073779 Sensitive lineage2.2.1 vn
ERR4832051 HR-TB lineage2.2.1 vn
SRR16370515 RR-TB lineage2.2.1 None
SRR22249622 Sensitive lineage2.2.1 None
ERR7737803 MDR-TB lineage2.2.1 None
SRR5067531 Other lineage2.2.1 vn
SRR24083721 Sensitive lineage2.2.1 None
SRR5067244 HR-TB lineage2.2.1 vn
ERR1035087 MDR-TB lineage2.2.1 vn
ERR4831616 MDR-TB lineage2.2.1 None
SRR29050773 HR-TB lineage2.2.1 None
SRR6046482 Other La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
ERR4828522 Sensitive lineage2.2.1 vn
ERR4830229 HR-TB lineage2.2.1 vn
ERR4830349 Sensitive lineage2.2.1.1 vn
DRR261062 HR-TB lineage2.2.1 None
SRR5065365 Sensitive lineage2.2.1 vn
SRR5065610 MDR-TB lineage2.2.1 vn
ERR9125903 Sensitive lineage2.2.1 None
SRR5067432 Sensitive lineage2.2.1 vn
ERR4828496 HR-TB lineage2.2.1 vn
ERR4798406 MDR-TB La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 None
SRR5065224 Sensitive lineage2.2.1 vn
SRR5073662 Sensitive lineage2.2.1 vn
SRR24083697 Sensitive lineage2.2.1 None
SRR26399691 HR-TB lineage2.2.1 None
ERR4831760 MDR-TB lineage2.2.1 vn
SRR27450456 HR-TB lineage2.2.1 None
ERR4828527 HR-TB lineage2.2.1 vn
SRR26937015 Pre-XDR-TB lineage2.2.1 None
SRR26399281 HR-TB lineage2.2.1 None
SRR26399290 Sensitive lineage2.2.1 None
SRR26399633 Other lineage2.2.1 None
SRR26399391 Other lineage2.2.1 None
ERR4828437 Sensitive lineage2.2.1 None
SRR26399510 HR-TB lineage2.2.1 None
SRR26399412 Sensitive lineage2.2.1 None
SRR29050987 HR-TB lineage2.2.1 None
SRR5065483 Sensitive lineage2.2.1 None
ERR4828711 HR-TB lineage2.2.1 vn
ERR4831966 HR-TB lineage2.2.1 vn
SRR5065377 Other lineage2.2.1 vn
SRR6046824 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
ERR4828514 HR-TB lineage2.2.1 None
ERR7737719 MDR-TB lineage2.2.1 None
ERR4828631 HR-TB lineage2.2.1 vn
SRR5065581 HR-TB lineage2.2.1 vn
SRR5065612 Sensitive lineage2.2.1 vn
SRR14519670 Other lineage2.2.1 None
SRR5067416 Sensitive lineage2.2.1 vn
DRR473959 Sensitive lineage2.2.1 None
SRR27450630 Sensitive lineage2.2.1 None
SRR5073673 HR-TB lineage2.2.1 vn
ERR4831995 HR-TB lineage2.2.1 vn
SRR24083611 Sensitive lineage2.2.1 None
SRR26399784 Sensitive lineage2.2.1 None
SRR26399465 Other lineage2.2.1 None
SRR5073777 Sensitive lineage2.2.1 vn
ERR4798262 HR-TB La1.2.BCG None
SRR26400028 HR-TB lineage2.2.1 None
SRR24083739 Sensitive lineage2.2.1 None
SRR6046026 RR-TB lineage4.2;lineage4.9 None
SRR26399494 Other lineage1.1.1.1;lineage2.2.1 None
SRR28858388 Sensitive lineage2.2.1 None
SRR16097559 Sensitive lineage2.2.1 None
SRR3675390 Other La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
SRR26399318 HR-TB lineage2.2.1 None
SRR26399969 Sensitive lineage2.2.1 None
ERR502889 Other La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 None
SRR5073852 Sensitive lineage2.2.1 vn
ERR718280 HR-TB lineage2.2.1 th
ERR7737814 MDR-TB lineage2.2.1 None
ERR7911502 MDR-TB lineage2.2.1 vn
SRR5067496 Other lineage2.2.1 vn
SRR067497 MDR-TB lineage2.2.1 None
SRR26399484 Other lineage2.2.1 None
ERR4830393 HR-TB lineage2.2.1 vn
SRR22250127 HR-TB lineage2.2.1 None
ERR4831931 MDR-TB lineage2.2.1 vn
ERR3439432 Other M.canetti;lineage4.6.4;lineage4.9 None
SRR26399579 HR-TB lineage2.2.1 None
SRR27450467 Sensitive lineage2.2.1 None
SRR5067286 Sensitive lineage2.2.1 vn
SRR5073794 HR-TB lineage2.2.1 vn
ERR4828634 HR-TB lineage2.2.1 vn
ERR4828756 HR-TB lineage2.2.1 vn
SRR16370543 MDR-TB lineage2.2.1 None
ERR9125463 MDR-TB lineage2.2.1 None
ERR4830457 HR-TB lineage2.2.1 vn
ERR4831643 RR-TB lineage2.2.1 vn
ERR4831959 HR-TB lineage2.2.1 vn
SRR26399972 MDR-TB lineage2.2.1 None
ERR13291596 Sensitive lineage2.2.1 None
ERR9119398 HR-TB lineage2.2.1 None
SRR5073655 Sensitive lineage2.2.1 vn
SRR8217915 Other lineage2.2.1 None
SRR5073964 Other lineage2.2.1 vn
ERR4828531 HR-TB lineage2.2.1 vn
SRR21732280 Sensitive lineage2.2.1 None
SRR29267197 Sensitive lineage2.2.1 None
SRR29050847 HR-TB lineage2.2.1 None
SRR29017265 Sensitive lineage2.2.1 None
SRR26399420 HR-TB lineage2.2.1 None
SRR6397343 Sensitive lineage2.2.1 ca
SRR26558620 MDR-TB lineage2.2.1 None
ERR5311079 Other La1.6;La3;M.canetti;lineage4.2;lineage4.9 None
SRR17729407 HR-TB lineage2.2.1 None
SRR28409654 Sensitive lineage2.2.1 None
SRR26400083 Other lineage2.2.1 None
SRR6397493 Sensitive lineage2.2.1 ca
SRR3675550 RR-TB M.canetti;lineage4.2;lineage4.9 None
ERR9119429 Sensitive lineage2.2.1 None
ERR4828749 Sensitive lineage2.2.1 None
SRR29050844 HR-TB lineage2.2.1 None
SRR29051402 Sensitive lineage2.2.1 None
ERR7737672 MDR-TB lineage2.2.1 None
SRR29051419 Sensitive lineage2.2.1 None
ERR2843505 HR-TB lineage2.2.1 None
SRR27450631 Other lineage2.2.1 None
ERR9119271 Sensitive lineage2.2.1 None
ERR5311103 RR-TB La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 None
ERR9119347 HR-TB lineage2.2.1 None
SRR5067640 Sensitive lineage2.2.1 vn
ERR4831658 MDR-TB lineage2.2.1 vn
ERR9119433 HR-TB lineage2.2.1 None
SRR5073610 Other lineage2.2.1 vn
SRR5065658 Sensitive lineage2.2.1 vn
ERR4831774 HR-TB lineage2.2.1 vn
SRR19325555 Sensitive lineage2.2.1 None
SRR16370669 MDR-TB lineage2.2.1 None
SRR27450463 HR-TB lineage2.2.1 None
SRR16058688 MDR-TB lineage2.2.1 None
ERR4831912 HR-TB lineage2.2.1 vn
ERR7911309 MDR-TB lineage2.2.1 vn
ERR4830395 Sensitive lineage2.2.1 vn
SRR26399616 Other lineage2.2.1 None
ERR4831900 HR-TB lineage2.2.1 vn
ERR294266 HR-TB lineage4.2;lineage4.8.1;lineage4.9 None
SRR8217893 HR-TB lineage2.2.1 None
SRR26937145 MDR-TB lineage2.2.1 None
ERR4828703 MDR-TB lineage2.2.1 vn
ERR7911132 RR-TB lineage2.2.1 vn