Rv0001 - c.1389C>T


Drug resistance types
104 Sensitive 8 RR-TB 87 HR-TB 73 MDR-TB 2 Pre-XDR-TB 0 XDR-TB 36 Other
lineage Counts
lineage Count
lineage2.2.1 280
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 1
lineage1.1.1.1;lineage2.2.1 2
La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 3
lineage4.2;lineage4.9 2
lineage2.2.1;lineage2.2.2 1
La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 1
lineage4.9;lineage6.3 1
La1.6;La3;M.canetti;lineage4.2;lineage4.9 1
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 1
lineage4.2;lineage4.8.1;lineage4.9 2
lineage4.1.2.1 1
M.canetti;lineage4.2 1
lineage2.2.1;lineage4.9 1
La1.6;La3;M.canetti;lineage4.2.2 1
lineage2.2.1.1 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 1
lineage4.9 1
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 1
La1.2.BCG 1
M.canetti;lineage4.6.4;lineage4.9 1
M.canetti;lineage4.2;lineage4.9 1
La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 1
La3;M.canetti;lineage2;lineage4.2;lineage4.3 1
spoligotype Counts
spoligotype Count
None 310
Geographic prevalence
Country level data for this variant is available for 136 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR5067460 Sensitive lineage2.2.1 vn
DRR261031 Other lineage2.2.1 None
SRR26399459 Sensitive lineage2.2.1 None
SRR5073951 Sensitive lineage2.2.1 vn
SRR26936943 MDR-TB lineage2.2.1 None
ERR4831941 MDR-TB lineage2.2.1 vn
SRR5067399 HR-TB lineage2.2.1 vn
ERR4820402 HR-TB lineage2.2.1 gb
SRR5065581 HR-TB lineage2.2.1 vn
SRR5065612 Sensitive lineage2.2.1 vn
ERR7911318 MDR-TB lineage2.2.1 vn
SRR5065585 HR-TB lineage2.2.1 vn
SRR5073506 HR-TB lineage2.2.1 vn
DRR473959 Sensitive lineage2.2.1 None
SRR5065634 Sensitive lineage2.2.1 vn
ERR7911171 MDR-TB lineage2.2.1 vn
SRR5073673 HR-TB lineage2.2.1 vn
SRR6397673 Sensitive lineage2.2.1 ca
SRR5073723 HR-TB lineage2.2.1 vn
SRR26399891 HR-TB lineage2.2.1 None
ERR9125463 MDR-TB lineage2.2.1 None
SRR26399465 Other lineage2.2.1 None
ERR4830228 Sensitive lineage2.2.1 vn
ERR11043438 Pre-XDR-TB lineage2.2.1 None
SRR16097559 Sensitive lineage2.2.1 None
SRR5065303 MDR-TB lineage2.2.1 vn
SRR6480606 Sensitive lineage2.2.1 None
SRR21732431 Sensitive lineage2.2.1 None
ERR133986 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 None
SRR26399494 Other lineage1.1.1.1;lineage2.2.1 None
SRR26399399 HR-TB lineage2.2.1 None
SRR26399184 Other lineage2.2.1 None
SRR28409654 Sensitive lineage2.2.1 None
ERR4828457 Sensitive lineage2.2.1 vn
ERR4830421 Other lineage2.2.1 vn
ERR9119438 HR-TB lineage2.2.1 None
SRR5073521 MDR-TB lineage2.2.1 vn
SRR26399484 Other lineage2.2.1 None
SRR5074166 HR-TB lineage2.2.1 vn
ERR5311091 Other La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
ERR4831853 MDR-TB lineage2.2.1 vn
ERR067681 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
SRR22249694 Sensitive lineage2.2.1 None
SRR6046295 MDR-TB lineage4.2;lineage4.9 None
ERR9119433 HR-TB lineage2.2.1 None
SRR5073868 HR-TB lineage2.2.1 vn
SRR27450149 HR-TB lineage2.2.1 None
ERR4831625 MDR-TB lineage2.2.1 vn
ERR4831995 HR-TB lineage2.2.1 vn
SRR26400083 Other lineage2.2.1 None
SRR5073992 Sensitive lineage2.2.1 vn
SRR5073618 Other lineage2.2.1 vn
SRR17729407 HR-TB lineage2.2.1 None
ERR9119429 Sensitive lineage2.2.1 None
DRR261185 Other lineage2.2.1 None
ERR4828420 Sensitive lineage2.2.1 None
SRR24083639 Sensitive lineage2.2.1 None
ERR552949 HR-TB lineage2.2.1 de
SRR5073809 Sensitive lineage2.2.1;lineage2.2.2 vn
SRR5065658 Sensitive lineage2.2.1 vn
ERR4831774 HR-TB lineage2.2.1 vn
SRR19325555 Sensitive lineage2.2.1 None
SRR16370669 MDR-TB lineage2.2.1 None
SRR24083611 Sensitive lineage2.2.1 None
ERR4828483 Sensitive lineage2.2.1 vn
SRR26399310 Sensitive lineage2.2.1 None
SRR21732052 Sensitive lineage2.2.1 None
ERR4831760 MDR-TB lineage2.2.1 vn
SRR26399744 HR-TB lineage2.2.1 None
ERR4831900 HR-TB lineage2.2.1 vn
SRR5073942 Sensitive lineage2.2.1 vn
SRR26399328 Sensitive lineage2.2.1 None
SRR26399969 Sensitive lineage2.2.1 None
ERR4831643 RR-TB lineage2.2.1 vn
ERR4828703 MDR-TB lineage2.2.1 vn
ERR9119405 Sensitive lineage2.2.1 None
SRR5067432 Sensitive lineage2.2.1 vn
ERR7911329 MDR-TB lineage2.2.1 vn
SRR5073852 Sensitive lineage2.2.1 vn
ERR4798406 MDR-TB La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 None
ERR212121 HR-TB lineage4.9;lineage6.3 None
SRR5073909 HR-TB lineage2.2.1 vn
ERR9119293 HR-TB lineage2.2.1 None
SRR24083697 Sensitive lineage2.2.1 None
SRR26399815 Sensitive lineage2.2.1 None
SRR5074163 Sensitive lineage2.2.1 vn
SRR6397343 Sensitive lineage2.2.1 ca
SRR5067496 Other lineage2.2.1 vn
ERR4831797 MDR-TB lineage2.2.1 vn
ERR4830338 HR-TB lineage2.2.1 vn
ERR5311079 MDR-TB La1.6;La3;M.canetti;lineage4.2;lineage4.9 None
ERR4828297 MDR-TB lineage2.2.1 None
SRR26558629 HR-TB lineage2.2.1 None
ERR4828437 Sensitive lineage2.2.1 None
ERR4831931 MDR-TB lineage2.2.1 vn
SRR26399510 HR-TB lineage2.2.1 None
SRR5065270 HR-TB lineage2.2.1 vn
ERR7911141 MDR-TB lineage2.2.1 vn
SRR5065483 Sensitive lineage2.2.1 None
SRR5341418 MDR-TB La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 None
SRR5065377 Other lineage2.2.1 vn
ERR4828514 HR-TB lineage2.2.1 None
ERR4828463 HR-TB lineage2.2.1 vn
SRR5074096 Other lineage2.2.1 vn
ERR4828522 Sensitive lineage2.2.1 vn
SRR27450467 Sensitive lineage2.2.1 None
SRR26399290 Sensitive lineage2.2.1 None
ERR4831658 MDR-TB lineage2.2.1 vn
SRR067497 MDR-TB lineage2.2.1 None
SRR26399904 HR-TB lineage2.2.1 None
ERR7737719 MDR-TB lineage2.2.1 None
ERR294266 MDR-TB lineage4.2;lineage4.8.1;lineage4.9 None
SRR27450463 HR-TB lineage2.2.1 None
ERR11080827 Sensitive lineage4.1.2.1 None
SRR22250127 HR-TB lineage2.2.1 None
SRR26399281 HR-TB lineage2.2.1 None
ERR4828281 HR-TB lineage2.2.1 None
ERR403298 MDR-TB M.canetti;lineage4.2 None
ERR718280 HR-TB lineage2.2.1 th
SRR26399977 HR-TB lineage2.2.1 None
SRR5073777 Sensitive lineage2.2.1 vn
SRR26399972 MDR-TB lineage2.2.1 None
ERR4830279 Other lineage2.2.1 vn
ERR4831744 MDR-TB lineage2.2.1 None
ERR7737803 MDR-TB lineage2.2.1 None
SRR26936964 HR-TB lineage2.2.1;lineage4.9 None
SRR5067311 Sensitive lineage2.2.1 vn
SRR26399784 Sensitive lineage2.2.1 None
SRR5065424 Other lineage2.2.1 vn
ERR4828749 Sensitive lineage2.2.1 None
SRR16058248 Sensitive lineage2.2.1 None
SRR6397493 Sensitive lineage2.2.1 ca
ERR4828772 HR-TB lineage2.2.1 None
SRR26399391 Other lineage2.2.1 None
SRR5073537 Other lineage2.2.1 vn
SRR5073655 Sensitive lineage2.2.1 vn
SRR5065400 HR-TB lineage2.2.1 vn
SRR5065380 HR-TB lineage2.2.1 vn
SRR5073713 Sensitive lineage2.2.1 vn
ERR718241 MDR-TB lineage2.2.1 th
ERR4828531 HR-TB lineage2.2.1 vn
ERR4831650 MDR-TB lineage2.2.1 vn
ERR7737814 MDR-TB lineage2.2.1 None
SRR5073964 Other lineage2.2.1 vn
ERR4831616 MDR-TB lineage2.2.1 None
SRR26399633 Other lineage2.2.1 None
SRR27450150 HR-TB lineage2.2.1 None
SRR26399420 HR-TB lineage2.2.1 None
SRR5073677 Other lineage2.2.1 vn
ERR4828634 HR-TB lineage2.2.1 vn
SRR26936955 MDR-TB lineage2.2.1 None
SRR6397390 Sensitive lineage2.2.1 ca
ERR4830403 HR-TB lineage2.2.1 vn
ERR2843504 Other lineage2.2.1 None
SRR26399786 Other lineage2.2.1 None
SRR5073997 Sensitive lineage2.2.1 vn
SRR11662696 MDR-TB La1.6;La3;M.canetti;lineage4.2.2 None
ERR4830237 Sensitive lineage2.2.1 vn
ERR4830349 Sensitive lineage2.2.1.1 vn
ERR4831889 HR-TB lineage2.2.1 None
ERR7911305 MDR-TB lineage2.2.1 vn
ERR4828711 HR-TB lineage2.2.1 vn
ERR4831748 HR-TB lineage2.2.1 vn
ERR9119399 HR-TB lineage2.2.1 None
SRR22249622 Sensitive lineage2.2.1 None
SRR5073536 Sensitive lineage2.2.1 vn
ERR4830301 Sensitive lineage2.2.1 vn
SRR24083721 Sensitive lineage2.2.1 None
DRR261192 HR-TB lineage2.2.1 None
ERR7911481 MDR-TB lineage2.2.1 vn
ERR4828352 Other lineage2.2.1 vn
ERR4828439 Sensitive lineage2.2.1 None
ERR9119347 HR-TB lineage2.2.1 None
SRR21690798 Sensitive lineage2.2.1 None
SRR5067244 HR-TB lineage2.2.1 vn
SRR5065373 Sensitive lineage2.2.1 vn
SRR5067640 Sensitive lineage2.2.1 vn
ERR4830393 HR-TB lineage2.2.1 vn
SRR6046482 Other La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
SRR26399571 Sensitive lineage2.2.1 None
ERR4830423 Sensitive lineage2.2.1 vn
SRR8217915 Other lineage2.2.1 None
ERR2677464 MDR-TB lineage2.2.1 de
ERR9119368 Other lineage2.2.1 None
SRR26936935 MDR-TB lineage2.2.1 None
SRR21732616 Sensitive lineage2.2.1 None
ERR11068032 Sensitive lineage2.2.1 None
ERR4831912 HR-TB lineage2.2.1 vn
SRR5067704 MDR-TB lineage2.2.1 vn
ERR4831959 HR-TB lineage2.2.1 vn
ERR4830229 HR-TB lineage2.2.1 vn
DRR261017 HR-TB lineage2.2.1 None
DRR261119 MDR-TB lineage2.2.1 None
SRR8217893 HR-TB lineage2.2.1 None
SRR16370543 MDR-TB lineage2.2.1 None
ERR4828190 HR-TB lineage2.2.1 vn
ERR9119284 Sensitive lineage2.2.1 None
ERR4828470 Sensitive lineage2.2.1 vn
SRR5067286 Sensitive lineage2.2.1 vn
ERR4828756 HR-TB lineage2.2.1 vn
SRR5073925 Sensitive lineage2.2.1 None
ERR11069114 MDR-TB lineage2.2.1 None
ERR7737839 MDR-TB lineage2.2.1 None
ERR1035162 MDR-TB M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 None
ERR7911502 MDR-TB lineage2.2.1 vn
SRR26937007 MDR-TB lineage2.2.1 None
SRR27450456 HR-TB lineage2.2.1 None
ERR176751 HR-TB lineage4.9 None
SRR27450631 Other lineage2.2.1 None
SRR27450458 Sensitive lineage2.2.1 None
ERR11081478 Other lineage2.2.1 None
ERR7911490 MDR-TB lineage2.2.1 vn
ERR4828730 Sensitive lineage2.2.1 vn
SRR27450332 Sensitive lineage2.2.1 None
ERR4831966 HR-TB lineage2.2.1 vn
ERR4828725 Sensitive lineage2.2.1 vn
SRR26399914 Sensitive lineage2.2.1 None
SRR6046824 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
ERR7737860 MDR-TB lineage2.2.1 None
ERR4828631 HR-TB lineage2.2.1 vn
SRR5073776 Sensitive lineage2.2.1 vn
SRR26937020 MDR-TB lineage2.2.1 None
SRR26937015 Pre-XDR-TB lineage2.2.1 None
ERR4828224 Sensitive lineage2.2.1 vn
SRR14519670 Other lineage2.2.1 None
SRR5067416 Sensitive lineage2.2.1 vn
SRR5073794 HR-TB lineage2.2.1 vn
SRR27450630 Sensitive lineage2.2.1 None
SRR26937123 MDR-TB lineage2.2.1 None
SRR26399619 MDR-TB lineage2.2.1 None
ERR502889 MDR-TB La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 None
SRR26399497 HR-TB lineage2.2.1 None
SRR6045785 MDR-TB lineage4.2;lineage4.8.1;lineage4.9 None
ERR4830395 Sensitive lineage2.2.1 vn
SRR5065610 MDR-TB lineage2.2.1 vn
ERR9119424 Sensitive lineage2.2.1 None
SRR26400028 HR-TB lineage2.2.1 None
SRR24083739 Sensitive lineage2.2.1 None
SRR6046026 RR-TB lineage4.2;lineage4.9 None
SRR26400018 Sensitive lineage2.2.1 None
ERR4831707 HR-TB lineage2.2.1 vn
SRR5065600 Sensitive lineage2.2.1 vn
ERR9119361 Sensitive lineage2.2.1 None
SRR26399691 HR-TB lineage2.2.1 None
ERR4798262 HR-TB La1.2.BCG None
SRR21732280 Sensitive lineage2.2.1 None
ERR9119271 Sensitive lineage2.2.1 None
ERR4828759 Sensitive lineage2.2.1 vn
SRR067479 MDR-TB lineage2.2.1 None
ERR3439432 RR-TB M.canetti;lineage4.6.4;lineage4.9 None
DRR261118 Other lineage2.2.1 None
ERR11067429 Sensitive lineage2.2.1 None
ERR9119204 Other lineage2.2.1 None
ERR4831719 RR-TB lineage2.2.1 None
SRR26937103 MDR-TB lineage2.2.1 None
SRR5065224 Sensitive lineage2.2.1 vn
SRR26558620 MDR-TB lineage2.2.1 None
SRR16058688 MDR-TB lineage2.2.1 None
SRR26399816 Sensitive lineage2.2.1 None
ERR1035087 MDR-TB lineage2.2.1 vn
SRR5065397 HR-TB lineage2.2.1 vn
SRR3675390 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
SRR3675550 RR-TB M.canetti;lineage4.2;lineage4.9 None
SRR5073779 Sensitive lineage2.2.1 vn
ERR4832051 HR-TB lineage2.2.1 vn
SRR16370515 RR-TB lineage2.2.1 None
ERR7737672 MDR-TB lineage2.2.1 None
SRR16370415 HR-TB lineage2.2.1 None
SRR5067531 Other lineage2.2.1 vn
ERR4828615 Sensitive lineage2.2.1 vn
ERR2843505 HR-TB lineage2.2.1 None
SRR26399692 Sensitive lineage2.2.1 None
ERR4830388 Sensitive lineage2.2.1 vn
ERR5311103 RR-TB La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 None
SRR5073662 Sensitive lineage2.2.1 vn
ERR7737913 MDR-TB lineage2.2.1 None
ERR9119398 HR-TB lineage2.2.1 None
ERR4815213 HR-TB lineage2.2.1 None
DRR261081 Other lineage2.2.1 None
ERR7911309 MDR-TB lineage2.2.1 vn
ERR4828444 MDR-TB lineage1.1.1.1;lineage2.2.1 vn
SRR26399616 Other lineage2.2.1 None
SRR22249801 Sensitive lineage2.2.1 None
ERR4831983 HR-TB lineage2.2.1 vn
ERR7737768 MDR-TB lineage2.2.1 None
ERR7911132 RR-TB lineage2.2.1 vn
DRR261062 HR-TB lineage2.2.1 None
SRR26937145 MDR-TB lineage2.2.1 None
ERR9125903 Sensitive lineage2.2.1 None
ERR4828442 Sensitive lineage2.2.1 vn
SRR26399412 Sensitive lineage2.2.1 None
SRR5067354 HR-TB lineage2.2.1 vn
ERR4828496 HR-TB lineage2.2.1 vn
SRR5073610 Other lineage2.2.1 vn
ERR4828377 HR-TB lineage2.2.1 vn
SRR26399318 HR-TB lineage2.2.1 None
SRR5065433 Sensitive lineage2.2.1 vn
SRR26399579 HR-TB lineage2.2.1 None
ERR4830380 HR-TB lineage2.2.1 vn
ERR4276895 MDR-TB lineage2.2.1 None
SRR21733095 Other lineage2.2.1 None
SRR5073714 Sensitive lineage2.2.1 vn
SRR22250182 Sensitive lineage2.2.1 None
SRR26399468 HR-TB lineage2.2.1 None
ERR4830457 HR-TB lineage2.2.1 vn
SRR26399857 Sensitive lineage2.2.1 None
ERR4828527 HR-TB lineage2.2.1 vn
SRR5065365 Sensitive lineage2.2.1 vn
SRR067560 MDR-TB lineage2.2.1 None
ERR158583 MDR-TB La3;M.canetti;lineage2;lineage4.2;lineage4.3 None