Run ID: ERR4972477
Sample name:
Date: 01-04-2023 21:42:34
Number of reads: 135111
Percentage reads mapped: 84.53
Strain: lineage4.3.3
Drug-resistance: MDR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.3.3 | Euro-American (LAM) | LAM;T | RD115 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761155 | p.Ser450Leu | missense_variant | 1.0 | rifampicin |
fabG1 | 1673425 | c.-15C>T | upstream_gene_variant | 0.83 | isoniazid, ethionamide |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5711 | p.Leu158Val | missense_variant | 0.5 |
gyrA | 6592 | c.-710C>A | upstream_gene_variant | 0.4 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7478 | p.Met59Ile | missense_variant | 0.29 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 7851 | p.Gly184Ser | missense_variant | 0.5 |
gyrA | 8040 | p.Gly247Ser | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
gyrA | 9380 | p.Met693Ile | missense_variant | 0.33 |
rpoB | 762856 | p.Val1017Asp | missense_variant | 0.25 |
rpoC | 764616 | p.Asn416Ser | missense_variant | 1.0 |
rpoC | 764797 | c.1428G>T | synonymous_variant | 0.29 |
rpoC | 764995 | c.1626C>G | synonymous_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 777431 | c.1047_1049delCGC | disruptive_inframe_deletion | 0.4 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1303417 | p.Gly163Cys | missense_variant | 0.5 |
embR | 1417468 | c.-121G>A | upstream_gene_variant | 0.5 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1473370 | n.1525T>C | non_coding_transcript_exon_variant | 0.5 |
fabG1 | 1673388 | c.-52T>A | upstream_gene_variant | 0.18 |
inhA | 1674682 | p.Met161Val | missense_variant | 1.0 |
rpsA | 1834498 | c.957C>T | synonymous_variant | 0.29 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154577 | p.Gly512Ala | missense_variant | 0.5 |
katG | 2156196 | c.-85C>T | upstream_gene_variant | 1.0 |
PPE35 | 2170065 | p.Ala183Gly | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518919 | p.Gly269Ser | missense_variant | 1.0 |
kasA | 2519128 | c.1014G>C | synonymous_variant | 0.67 |
kasA | 2519131 | c.1017G>C | synonymous_variant | 0.67 |
kasA | 2519140 | c.1026G>C | synonymous_variant | 0.67 |
kasA | 2519143 | c.1029G>C | synonymous_variant | 0.67 |
eis | 2714555 | p.Asp260Tyr | missense_variant | 0.5 |
folC | 2746340 | p.Ala420Val | missense_variant | 1.0 |
folC | 2746872 | p.Glu243* | stop_gained | 0.5 |
thyX | 3068090 | c.-145T>C | upstream_gene_variant | 0.29 |
thyA | 3073868 | p.Thr202Ala | missense_variant | 1.0 |
Rv3083 | 3449736 | c.1233G>A | synonymous_variant | 0.5 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
rpoA | 3878339 | p.Asp57Tyr | missense_variant | 0.2 |
clpC1 | 4038287 | c.2418C>T | synonymous_variant | 1.0 |
clpC1 | 4038769 | p.Arg646Gly | missense_variant | 0.25 |
panD | 4044203 | p.Thr27Ala | missense_variant | 0.29 |
embC | 4240127 | p.Gln89Glu | missense_variant | 0.4 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
aftB | 4268619 | p.Val73Gly | missense_variant | 1.0 |
whiB6 | 4338446 | p.Leu26Met | missense_variant | 0.25 |
whiB6 | 4338587 | c.-66T>C | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408156 | p.Leu16Arg | missense_variant | 1.0 |