Run ID: ERR553056
Sample name:
Date: 11-08-2022 00:08:44
Number of reads: 3066754
Percentage reads mapped: 99.66
Strain: lineage4.7
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.7 | Euro-American (mainly T) | T1;T5 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
embB | 4247429 | p.Met306Leu | missense_variant | 1.0 | ethambutol |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474294 | n.637C>G | non_coding_transcript_exon_variant | 1.0 |
fabG1 | 1673380 | c.-60C>G | upstream_gene_variant | 0.2 |
inhA | 1674952 | p.Pro251Ala | missense_variant | 0.15 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.31 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.3 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
folC | 2746832 | p.Val256Gly | missense_variant | 0.11 |
thyA | 3073806 | c.666C>G | synonymous_variant | 0.3 |
whiB7 | 3568610 | p.Asp24His | missense_variant | 1.0 |
alr | 3840618 | p.Asp268Gly | missense_variant | 1.0 |
embC | 4242425 | p.Arg855Gly | missense_variant | 0.18 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243929 | p.Leu233Met | missense_variant | 1.0 |
embB | 4246544 | p.Thr11Pro | missense_variant | 0.29 |
embB | 4246548 | p.Pro12Gln | missense_variant | 0.29 |
embB | 4246555 | c.42G>C | synonymous_variant | 0.33 |
embB | 4246556 | p.Ala15Pro | missense_variant | 0.33 |
embB | 4246563 | p.Leu17Trp | missense_variant | 0.19 |
embB | 4246567 | c.54G>T | synonymous_variant | 0.17 |
embB | 4247535 | p.Thr341Asn | missense_variant | 1.0 |
embB | 4249732 | c.3219C>G | synonymous_variant | 1.0 |
ethR | 4327213 | c.-336G>A | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |