Run ID: ERR9285882
Sample name:
Date: 02-04-2023 11:43:34
Number of reads: 805289
Percentage reads mapped: 99.61
Strain: lineage4.6
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.6 | Euro-American | T;LAM | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6519 | p.Val427Ala | missense_variant | 0.11 |
gyrB | 7131 | p.Arg631Leu | missense_variant | 0.12 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491448 | c.666C>T | synonymous_variant | 1.0 |
ccsA | 619955 | p.Val22Glu | missense_variant | 0.11 |
rpoC | 763644 | p.Met92Thr | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
Rv1258c | 1406555 | p.Trp262Cys | missense_variant | 0.11 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2168080 | p.Thr845Ala | missense_variant | 1.0 |
PPE35 | 2169053 | c.1560T>C | synonymous_variant | 0.11 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.29 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.29 |
PPE35 | 2170151 | c.460_461delTA | frameshift_variant | 0.12 |
PPE35 | 2170198 | p.Ala139Thr | missense_variant | 1.0 |
PPE35 | 2170792 | c.-180T>C | upstream_gene_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2290154 | c.-913C>A | upstream_gene_variant | 0.12 |
folC | 2747062 | c.533_536dupGCGG | frameshift_variant | 0.12 |
pepQ | 2860360 | p.Asp20Gly | missense_variant | 1.0 |
thyX | 3067290 | p.Leu219Pro | missense_variant | 0.12 |
thyX | 3067915 | p.Leu11Met | missense_variant | 0.11 |
thyX | 3067968 | c.-23C>T | upstream_gene_variant | 0.13 |
Rv3083 | 3448306 | c.-198G>T | upstream_gene_variant | 0.13 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612006 | p.Arg371Cys | missense_variant | 0.12 |
Rv3236c | 3612506 | p.His204Arg | missense_variant | 0.13 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243940 | p.Trp236* | stop_gained | 0.13 |
embA | 4243960 | p.Arg243Leu | missense_variant | 0.12 |
embB | 4247267 | c.755delT | frameshift_variant | 0.11 |
ethA | 4327332 | p.Phe48Leu | missense_variant | 0.12 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408129 | p.Ala25Val | missense_variant | 0.11 |