Run ID: SRR10272576
Sample name:
Date: 02-04-2023 16:42:50
Number of reads: 1101935
Percentage reads mapped: 90.82
Strain: lineage4.4.1.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.4 | Euro-American | S;T | None | 1.0 |
lineage4.4.1 | Euro-American (S-type) | S;T | None | 0.99 |
lineage4.4.1.1 | Euro-American | S;Orphans | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
mshA | 575474 | p.Asp43Tyr | missense_variant | 0.12 |
rpoC | 765341 | p.Pro658Thr | missense_variant | 0.11 |
rpoC | 765654 | p.Arg762Leu | missense_variant | 0.12 |
rpoC | 766891 | c.3527delT | frameshift_variant | 0.12 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 777136 | p.Met449Leu | missense_variant | 0.11 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1473936 | n.279A>G | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474489 | n.832T>C | non_coding_transcript_exon_variant | 0.13 |
rrl | 1474755 | n.1098G>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475284 | n.1627C>T | non_coding_transcript_exon_variant | 0.12 |
fabG1 | 1673380 | c.-60C>G | upstream_gene_variant | 0.17 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102990 | p.Val18Ala | missense_variant | 1.0 |
PPE35 | 2169840 | p.Gly258Asp | missense_variant | 1.0 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.49 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.49 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289970 | c.-730delT | upstream_gene_variant | 0.18 |
kasA | 2518346 | c.232C>A | synonymous_variant | 0.12 |
kasA | 2518864 | c.750G>C | synonymous_variant | 0.14 |
pepQ | 2859613 | p.Glu269Val | missense_variant | 0.15 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
Rv3083 | 3448608 | c.105G>A | synonymous_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3475071 | p.Tyr355* | stop_gained | 0.18 |
fprA | 3475357 | c.1351T>C | synonymous_variant | 0.12 |
Rv3236c | 3612155 | p.Arg321Leu | missense_variant | 1.0 |
Rv3236c | 3612665 | p.Val151Ala | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4246544 | p.Thr11Pro | missense_variant | 0.18 |
embB | 4246548 | p.Pro12Gln | missense_variant | 0.24 |
embB | 4246555 | c.42G>C | synonymous_variant | 0.27 |
embB | 4246556 | p.Ala15Pro | missense_variant | 0.27 |
embB | 4246563 | p.Leu17Trp | missense_variant | 0.11 |
embB | 4249498 | c.2985G>T | synonymous_variant | 0.12 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408023 | c.180A>G | synonymous_variant | 0.14 |