Run ID: SRR10808657
Sample name:
Date: 02-04-2023 19:03:53
Number of reads: 630241
Percentage reads mapped: 99.72
Strain: lineage4.4.1.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.4 | Euro-American | S;T | None | 1.0 |
lineage4.4.1 | Euro-American (S-type) | S;T | None | 1.0 |
lineage4.4.1.1 | Euro-American | S;Orphans | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
gyrA | 9443 | c.2142G>A | synonymous_variant | 0.1 |
fgd1 | 491491 | p.Pro237Ala | missense_variant | 0.2 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.24 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781676 | c.117C>T | synonymous_variant | 1.0 |
atpE | 1461105 | p.Ala21Thr | missense_variant | 0.12 |
atpE | 1461224 | c.180T>C | synonymous_variant | 0.17 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1476241 | n.2584A>T | non_coding_transcript_exon_variant | 0.12 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102990 | p.Val18Ala | missense_variant | 1.0 |
PPE35 | 2169840 | p.Gly258Asp | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518492 | p.Tyr126* | stop_gained | 0.11 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
Rv3083 | 3448608 | c.105G>A | synonymous_variant | 1.0 |
Rv3083 | 3448688 | p.Phe62Ser | missense_variant | 0.13 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612665 | p.Val151Ala | missense_variant | 1.0 |
Rv3236c | 3613091 | p.Phe9Tyr | missense_variant | 0.12 |
fbiB | 3641690 | c.156G>A | synonymous_variant | 0.11 |
fbiB | 3642415 | p.Pro294Leu | missense_variant | 0.12 |
clpC1 | 4039357 | c.1348C>T | synonymous_variant | 0.15 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4244433 | p.Ala401Pro | missense_variant | 0.1 |
embA | 4245032 | c.1800A>G | synonymous_variant | 0.11 |
embB | 4246584 | p.Arg24Pro | missense_variant | 0.6 |
embB | 4247028 | p.Leu172Arg | missense_variant | 0.33 |
aftB | 4268340 | p.Pro166Leu | missense_variant | 0.1 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407577 | p.Lys209Arg | missense_variant | 0.11 |