Run ID: SRR10869070
Sample name:
Date: 02-04-2023 19:38:06
Number of reads: 537264
Percentage reads mapped: 96.72
Strain: lineage4.1.1.2
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.1 | Euro-American (X-type) | X1;X2;X3 | None | 1.0 |
lineage4.1.1.2 | Euro-American (X-type) | X1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6016 | c.777C>T | synonymous_variant | 0.18 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 7853 | c.552C>T | synonymous_variant | 0.12 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
mshA | 575297 | c.-51G>A | upstream_gene_variant | 0.18 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
rpoC | 766095 | p.Thr909Lys | missense_variant | 0.12 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776741 | c.1740C>T | synonymous_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1303161 | c.231G>T | synonymous_variant | 0.17 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472045 | n.200T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.1 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 0.1 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
eis | 2714258 | p.Leu359Phe | missense_variant | 0.12 |
ahpC | 2725932 | c.-261G>T | upstream_gene_variant | 0.12 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ald | 3087299 | p.Met160Ile | missense_variant | 0.11 |
Rv3083 | 3449787 | c.1284C>T | synonymous_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fbiB | 3640551 | c.-984C>T | upstream_gene_variant | 0.13 |
ddn | 3986820 | c.-24C>A | upstream_gene_variant | 1.0 |
embC | 4241136 | p.Val425Ala | missense_variant | 0.12 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embA | 4243833 | p.Ala201Thr | missense_variant | 1.0 |
embB | 4245758 | c.-756C>T | upstream_gene_variant | 0.13 |
embB | 4246798 | c.289delG | frameshift_variant | 0.18 |
embB | 4246894 | p.Asp127Glu | missense_variant | 0.15 |
embB | 4246930 | p.Gln139His | missense_variant | 1.0 |
embB | 4249408 | c.2895G>A | synonymous_variant | 1.0 |
aftB | 4267312 | p.Gly509Arg | missense_variant | 0.12 |
aftB | 4267342 | p.Gly499Arg | missense_variant | 0.12 |
aftB | 4269087 | c.-251G>A | upstream_gene_variant | 0.18 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |