Run ID: SRR10993940
Sample name:
Date: 02-04-2023 19:48:41
Number of reads: 148075
Percentage reads mapped: 99.48
Strain: La1.6
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
La1 | M.bovis | None | None | 1.0 |
La1.6 | M.bovis | None | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
pncA | 2289073 | p.His57Asp | missense_variant | 1.0 | pyrazinamide |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5752 | c.513G>A | synonymous_variant | 1.0 |
gyrA | 6406 | c.-896C>T | upstream_gene_variant | 1.0 |
gyrB | 6446 | p.Ala403Ser | missense_variant | 1.0 |
gyrA | 7042 | c.-260C>T | upstream_gene_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8215 | p.Gln305Arg | missense_variant | 0.15 |
gyrA | 8285 | c.984C>T | synonymous_variant | 1.0 |
gyrA | 9143 | c.1842T>C | synonymous_variant | 1.0 |
gyrA | 9217 | p.Asp639Ala | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491521 | p.Arg247Trp | missense_variant | 0.2 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 576750 | p.Lys468Thr | missense_variant | 0.29 |
ccsA | 619831 | c.-60T>G | upstream_gene_variant | 0.4 |
ccsA | 620455 | p.Ala189Thr | missense_variant | 0.4 |
ccsA | 620768 | p.Ala293Gly | missense_variant | 1.0 |
rpoB | 759620 | c.-187A>C | upstream_gene_variant | 0.3 |
rpoB | 761152 | p.Leu449Gln | missense_variant | 0.2 |
rpoB | 761551 | p.Ser582Trp | missense_variant | 0.5 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 775702 | p.Pro927Thr | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781431 | c.-129G>A | upstream_gene_variant | 1.0 |
fbiC | 1302899 | c.-32A>G | upstream_gene_variant | 1.0 |
fbiC | 1303347 | c.417T>C | synonymous_variant | 0.13 |
Rv1258c | 1406870 | c.471C>G | synonymous_variant | 0.4 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1476022 | n.2365A>G | non_coding_transcript_exon_variant | 1.0 |
rpsA | 1834859 | p.Ala440Thr | missense_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2103173 | c.-132delG | upstream_gene_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
katG | 2155503 | c.609C>T | synonymous_variant | 1.0 |
katG | 2156025 | c.87C>A | synonymous_variant | 1.0 |
katG | 2156460 | c.-349C>A | upstream_gene_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2168011 | p.Ser868Arg | missense_variant | 1.0 |
PPE35 | 2168319 | p.Thr765Ile | missense_variant | 1.0 |
PPE35 | 2168814 | c.1798dupA | frameshift_variant | 1.0 |
Rv1979c | 2222060 | p.Phe369Leu | missense_variant | 0.25 |
Rv1979c | 2222308 | p.Asp286Gly | missense_variant | 1.0 |
Rv1979c | 2223006 | c.158dupT | frameshift_variant | 0.25 |
Rv1979c | 2223062 | p.Thr35Ala | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518132 | c.18C>T | synonymous_variant | 1.0 |
ahpC | 2726267 | c.75G>A | synonymous_variant | 0.5 |
folC | 2746245 | p.Ala452Thr | missense_variant | 1.0 |
ribD | 2987615 | c.777A>G | stop_lost&splice_region_variant | 1.0 |
thyA | 3074313 | p.Lys53Asn | missense_variant | 0.29 |
ald | 3086728 | c.-92C>T | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ald | 3087084 | c.266delA | frameshift_variant | 1.0 |
Rv3083 | 3448783 | p.Val94Ile | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474427 | p.Val141Ile | missense_variant | 1.0 |
fprA | 3475159 | p.Asn385Asp | missense_variant | 1.0 |
alr | 3840543 | p.Val293Ala | missense_variant | 1.0 |
alr | 3841183 | p.Thr80Ala | missense_variant | 0.25 |
clpC1 | 4038403 | c.2302T>C | synonymous_variant | 1.0 |
clpC1 | 4039484 | c.1221T>G | synonymous_variant | 0.33 |
embC | 4239973 | c.111T>G | synonymous_variant | 0.22 |
embC | 4240497 | p.Leu212Pro | missense_variant | 0.29 |
embA | 4242970 | c.-263C>T | upstream_gene_variant | 1.0 |
embA | 4244220 | c.988C>T | synonymous_variant | 1.0 |
embB | 4246551 | p.Asn13Ser | missense_variant | 1.0 |
embB | 4246864 | c.351C>T | synonymous_variant | 1.0 |
embB | 4247646 | p.Glu378Ala | missense_variant | 1.0 |
embB | 4247791 | c.1278C>T | synonymous_variant | 1.0 |
embB | 4247907 | p.Ile465Thr | missense_variant | 0.25 |
embB | 4248956 | p.Trp815Gly | missense_variant | 0.33 |
aftB | 4267858 | p.Ile327Val | missense_variant | 1.0 |
aftB | 4269351 | c.-515C>T | upstream_gene_variant | 1.0 |
ubiA | 4269387 | p.Glu149Asp | missense_variant | 1.0 |
aftB | 4269606 | c.-770T>C | upstream_gene_variant | 1.0 |
whiB6 | 4338361 | p.Arg54Pro | missense_variant | 0.17 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |