Run ID: SRR11972219
Sample name:
Date: 03-04-2023 05:32:24
Number of reads: 500594
Percentage reads mapped: 99.48
Strain: lineage4.1.1.3
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.1 | Euro-American (X-type) | X1;X2;X3 | None | 1.0 |
lineage4.1.1.3 | Euro-American (X-type) | X1;X3 | RD193 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
gyrA | 9711 | p.Met804Val | missense_variant | 0.11 |
rpoB | 762101 | c.2295C>T | synonymous_variant | 0.2 |
rpoC | 762935 | c.-435C>T | upstream_gene_variant | 0.12 |
rpoC | 763181 | c.-189G>A | upstream_gene_variant | 0.12 |
rpoC | 763662 | p.Ala98Val | missense_variant | 0.15 |
rpoC | 764086 | p.Asn239Lys | missense_variant | 0.12 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
rpoC | 765820 | c.2451G>A | synonymous_variant | 0.13 |
rpoC | 767033 | p.Ser1222Pro | missense_variant | 0.11 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776278 | p.Ile735Phe | missense_variant | 0.13 |
mmpL5 | 777577 | p.Met302Val | missense_variant | 0.12 |
mmpS5 | 778600 | p.Asn102Lys | missense_variant | 0.13 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rplC | 801124 | p.Phe106Leu | missense_variant | 0.1 |
fbiC | 1302954 | c.24G>A | synonymous_variant | 1.0 |
atpE | 1461213 | p.Val57Ile | missense_variant | 0.18 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474787 | n.1130A>G | non_coding_transcript_exon_variant | 0.11 |
rpsA | 1834396 | c.855G>A | synonymous_variant | 0.12 |
rpsA | 1834513 | c.972C>T | synonymous_variant | 0.15 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154678 | c.1434G>C | synonymous_variant | 1.0 |
PPE35 | 2168980 | p.Pro545Ser | missense_variant | 0.11 |
PPE35 | 2169405 | p.Asn403Ser | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289697 | c.-456G>A | upstream_gene_variant | 0.12 |
kasA | 2518112 | c.-3C>T | upstream_gene_variant | 0.2 |
eis | 2715567 | c.-235G>A | upstream_gene_variant | 0.15 |
ahpC | 2726409 | p.Asp73His | missense_variant | 1.0 |
pepQ | 2859369 | c.1050A>G | synonymous_variant | 0.17 |
ribD | 2987353 | p.Thr172Met | missense_variant | 0.25 |
Rv2752c | 3064564 | p.Glu543Val | missense_variant | 0.15 |
Rv2752c | 3064594 | p.Val533Ala | missense_variant | 0.18 |
Rv2752c | 3065003 | p.His397Tyr | missense_variant | 0.2 |
Rv2752c | 3067096 | c.-905C>T | upstream_gene_variant | 0.14 |
thyA | 3074616 | c.-145T>A | upstream_gene_variant | 0.2 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
Rv3083 | 3448351 | c.-153G>T | upstream_gene_variant | 0.12 |
Rv3083 | 3449493 | c.990G>A | synonymous_variant | 0.13 |
fprA | 3473963 | c.-44G>T | upstream_gene_variant | 0.17 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474030 | c.24C>T | synonymous_variant | 0.17 |
fprA | 3474177 | p.His57Gln | missense_variant | 0.22 |
fbiB | 3641407 | c.-128C>T | upstream_gene_variant | 0.18 |
clpC1 | 4038934 | p.Ala591Thr | missense_variant | 0.13 |
embC | 4241132 | p.Pro424Ser | missense_variant | 0.14 |
embC | 4241276 | c.1414C>T | synonymous_variant | 0.17 |
embC | 4241933 | p.Ala691Thr | missense_variant | 0.11 |
embC | 4242471 | p.Arg870Gln | missense_variant | 0.12 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embA | 4244544 | p.Ala438Thr | missense_variant | 0.11 |
embB | 4246544 | p.Thr11Pro | missense_variant | 0.17 |
embB | 4246548 | p.Pro12Gln | missense_variant | 0.17 |
embB | 4246555 | c.42G>C | synonymous_variant | 0.17 |
embB | 4246556 | p.Ala15Pro | missense_variant | 0.17 |
embB | 4246563 | p.Leu17Trp | missense_variant | 0.17 |
embB | 4246567 | c.54G>T | synonymous_variant | 0.17 |
embB | 4247369 | p.Gly286Ser | missense_variant | 0.12 |
embB | 4248048 | p.Ile512Thr | missense_variant | 0.11 |
embB | 4248087 | p.Tyr525Cys | missense_variant | 0.12 |
embB | 4249408 | c.2895G>A | synonymous_variant | 1.0 |
embB | 4249678 | c.3165C>A | synonymous_variant | 1.0 |
aftB | 4267971 | p.Phe289Ser | missense_variant | 0.11 |
aftB | 4268336 | c.501C>T | synonymous_variant | 0.11 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |