Rv3795 - c.3165C>A
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
122 Sensitive
11 RR-TB
31 HR-TB
91 MDR-TB
35 Pre-XDR-TB
0 XDR-TB
21 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.1.3 | 306 |
| lineage4.1.1.3;lineage4.3.4.2 | 3 |
| lineage4.1.1.3;lineage4.1.2.1 | 1 |
| lineage2.2.1.2;lineage4.1.1.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 311 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR6866046 | Sensitive | lineage4.1.1.3 | None | SRR29056002 | Sensitive | lineage4.1.1.3 | None | SRR18914183 | Sensitive | lineage4.1.1.3 | None | ERR4822202 | Sensitive | lineage4.1.1.3 | None | ERR13291765 | Sensitive | lineage4.1.1.3 | None | ERR12117928 | MDR-TB | lineage4.1.1.3 | None | ERR6866049 | Sensitive | lineage4.1.1.3 | None | SRR29464859 | Sensitive | lineage4.1.1.3 | None | SRR28389906 | Sensitive | lineage4.1.1.3 | None | SRR22461603 | HR-TB | lineage4.1.1.3 | None | ERR6865757 | Sensitive | lineage4.1.1.3 | None | SRR29893832 | Sensitive | lineage4.1.1.3 | None | SRR21713561 | Other | lineage4.1.1.3 | None | ERR13289780 | Other | lineage4.1.1.3 | None | SRR1183017 | Sensitive | lineage4.1.1.3 | None | SRR29219663 | MDR-TB | lineage4.1.1.3 | None | SRR7070336 | Sensitive | lineage4.1.1.3 | None | ERR13260381 | MDR-TB | lineage4.1.1.3 | None | ERR3287844 | MDR-TB | lineage4.1.1.3 | pe | ERR4024969 | MDR-TB | lineage4.1.1.3 | None | ERR3148159 | MDR-TB | lineage4.1.1.3 | mx | ERR3148207 | Sensitive | lineage4.1.1.3 | mx | ERR3148171 | MDR-TB | lineage4.1.1.3 | mx | ERR3287857 | Pre-XDR-TB | lineage4.1.1.3;lineage4.3.4.2 | None | SRR28394176 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR28394225 | MDR-TB | lineage4.1.1.3 | None | SRR7070267 | Sensitive | lineage4.1.1.3 | None | SRR1181130 | Other | lineage4.1.1.3 | None | ERR4812228 | MDR-TB | lineage4.1.1.3 | pe | ERR3287356 | MDR-TB | lineage4.1.1.3 | pe | ERR3287387 | Pre-XDR-TB | lineage4.1.1.3 | pe | ERR3287446 | HR-TB | lineage4.1.1.3 | pe | SRR28394219 | MDR-TB | lineage4.1.1.3;lineage4.1.2.1 | None | SRR28045035 | Sensitive | lineage4.1.1.3 | None | SRR28045197 | Sensitive | lineage4.1.1.3 | None | ERR3287667 | HR-TB | lineage4.1.1.3 | pe | ERR4812375 | MDR-TB | lineage4.1.1.3 | pe | SRR22461609 | HR-TB | lineage4.1.1.3 | None | SRR28393426 | MDR-TB | lineage4.1.1.3 | None | ERR3287848 | MDR-TB | lineage4.1.1.3 | pe | SRR28357648 | Other | lineage4.1.1.3 | None | SRR28394237 | MDR-TB | lineage4.1.1.3 | None | SRR28045686 | Sensitive | lineage4.1.1.3 | None | SRR22461584 | MDR-TB | lineage4.1.1.3 | None | SRR22461702 | MDR-TB | lineage4.1.1.3 | None | SRR28393708 | HR-TB | lineage4.1.1.3 | None | ERR4813507 | MDR-TB | lineage4.1.1.3 | pe | ERR7910867 | MDR-TB | lineage4.1.1.3 | pe | SRR28389850 | Other | lineage4.1.1.3 | None | SRR28683941 | MDR-TB | lineage4.1.1.3 | None | ERR7911375 | MDR-TB | lineage4.1.1.3 | pe | ERR4809246 | RR-TB | lineage4.1.1.3 | za | SRR28045819 | Sensitive | lineage4.1.1.3 | None | ERR751529 | Sensitive | lineage4.1.1.3 | pe | ERR751634 | MDR-TB | lineage4.1.1.3 | pe | ERR11591457 | Sensitive | lineage4.1.1.3 | None | ERR751502 | MDR-TB | lineage4.1.1.3 | pe | ERR751493 | HR-TB | lineage4.1.1.3 | pe | ERR4812775 | HR-TB | lineage4.1.1.3 | pe | ERR11488977 | RR-TB | lineage4.1.1.3 | None | ERR775314 | RR-TB | lineage4.1.1.3 | pe | ERR751505 | HR-TB | lineage4.1.1.3 | pe | ERR751470 | Pre-XDR-TB | lineage4.1.1.3 | pe | ERR775385 | Pre-XDR-TB | lineage4.1.1.3 | pe | ERR779896 | MDR-TB | lineage4.1.1.3 | pe | ERR751407 | HR-TB | lineage4.1.1.3 | pe | ERR751627 | MDR-TB | lineage4.1.1.3 | pe | ERR751625 | MDR-TB | lineage4.1.1.3 | pe | ERR4820737 | Sensitive | lineage4.1.1.3 | None | SRR22248473 | Sensitive | lineage4.1.1.3 | None | ERR8975983 | Sensitive | lineage4.1.1.3 | None | ERR8976019 | Sensitive | lineage4.1.1.3 | None | SRR19317597 | Sensitive | lineage4.1.1.3 | None | SRR28389834 | Sensitive | lineage4.1.1.3 | None | ERR4011979 | Sensitive | lineage4.1.1.3 | None | ERR4178258 | Sensitive | lineage4.1.1.3 | None | ERR751539 | MDR-TB | lineage4.1.1.3 | pe | ERR3148166 | Sensitive | lineage4.1.1.3 | mx | ERR2516621 | MDR-TB | lineage4.1.1.3 | nl | ERR2516664 | Pre-XDR-TB | lineage4.1.1.3 | pe | ERR2516525 | Pre-XDR-TB | lineage4.1.1.3 | pe | ERR2516573 | Pre-XDR-TB | lineage4.1.1.3 | pe | ERR2516709 | Pre-XDR-TB | lineage4.1.1.3 | pe | ERR2516663 | Pre-XDR-TB | lineage4.1.1.3 | pe | ERR2516543 | MDR-TB | lineage4.1.1.3 | pe | ERR2510213 | HR-TB | lineage4.1.1.3 | pe | ERR2512834 | Sensitive | lineage4.1.1.3 | gb | SRR6046374 | Other | lineage4.1.1.3 | gb | ERR2200096 | Sensitive | lineage4.1.1.3 | sz | SRR6982459 | Sensitive | lineage4.1.1.3 | None | SRR7069930 | Sensitive | lineage4.1.1.3 | None | ERR6865371 | MDR-TB | lineage4.1.1.3 | None | SRR28389827 | Sensitive | lineage4.1.1.3 | None | SRR28389880 | MDR-TB | lineage4.1.1.3 | None | ERR12118032 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR23252667 | Sensitive | lineage4.1.1.3 | None | SRR28381181 | Other | lineage4.1.1.3 | None | SRR21675434 | Sensitive | lineage4.1.1.3 | None | SRR28389847 | MDR-TB | lineage4.1.1.3 | None | SRR21675651 | Sensitive | lineage4.1.1.3 | None | ERR6865876 | Sensitive | lineage4.1.1.3 | None | ERR4025137 | Sensitive | lineage4.1.1.3 | None | SRR26112824 | Sensitive | lineage4.1.1.3 | None | ERR775379 | Pre-XDR-TB | lineage4.1.1.3 | pe | SAMEA5570051 | Pre-XDR-TB | lineage4.1.1.3;lineage4.3.4.2 | None | ERR6866939 | Sensitive | lineage4.1.1.3 | None | ERR2515670 | RR-TB | lineage4.1.1.3 | None | ERR2515985 | Sensitive | lineage4.1.1.3 | None | ERR12118030 | MDR-TB | lineage4.1.1.3 | None | ERR12118060 | MDR-TB | lineage4.1.1.3 | None | ERR3287656 | MDR-TB | lineage4.1.1.3 | pe | ERR4178120 | Sensitive | lineage4.1.1.3 | None | SRR28393746 | MDR-TB | lineage4.1.1.3 | None | ERR6865820 | Sensitive | lineage4.1.1.3 | None | ERR1034670 | MDR-TB | lineage4.1.1.3 | co | SRR6855823 | Sensitive | lineage4.1.1.3 | None | SRR21728710 | Sensitive | lineage4.1.1.3 | None | SRR28514689 | Other | lineage4.1.1.3 | None | SRR7070208 | Sensitive | lineage4.1.1.3 | None | ERR6879016 | MDR-TB | lineage4.1.1.3 | None | ERR6865391 | HR-TB | lineage4.1.1.3 | None | SRR19276644 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1180195 | Sensitive | lineage4.1.1.3 | None | SRR28389878 | MDR-TB | lineage4.1.1.3 | None | ERR13261955 | MDR-TB | lineage4.1.1.3 | None | ERR4025073 | Sensitive | lineage4.1.1.3 | None | SRR22251323 | Sensitive | lineage4.1.1.3 | None | SRR30296334 | Sensitive | lineage4.1.1.3 | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | SRR6981905 | Sensitive | lineage4.1.1.3 | None | SRR6982116 | Sensitive | lineage4.1.1.3 | None | SRR1180186 | Sensitive | lineage4.1.1.3 | None | SRR26112039 | Sensitive | lineage4.1.1.3 | None | SRR6982166 | Sensitive | lineage4.1.1.3 | None | SRR11972219 | Sensitive | lineage4.1.1.3 | None | SRR21728177 | Sensitive | lineage4.1.1.3 | None | SRR13583486 | HR-TB | lineage4.1.1.3 | None | SRR28683939 | Sensitive | lineage4.1.1.3 | None | SRR21689478 | Sensitive | lineage4.1.1.3 | None | SRR13870395 | MDR-TB | lineage4.1.1.3 | None | SRR29094370 | RR-TB | lineage4.1.1.3 | None | SRR28393381 | MDR-TB | lineage4.1.1.3 | None | ERR4817110 | Other | lineage4.1.1.3 | None | ERR13260623 | MDR-TB | lineage4.1.1.3 | None | SRR6045621 | Other | lineage4.1.1.3 | None | ERR4423646 | MDR-TB | lineage4.1.1.3 | None | ERR6052076 | Sensitive | lineage4.1.1.3 | None | SRR29055973 | Sensitive | lineage4.1.1.3 | None | SRR13870362 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR6865369 | MDR-TB | lineage4.1.1.3 | None | SRR28858672 | RR-TB | lineage4.1.1.3 | None | ERR13260664 | MDR-TB | lineage4.1.1.3 | None | SRR29267194 | Sensitive | lineage4.1.1.3 | None | ERR4820879 | Sensitive | lineage4.1.1.3 | None | SRR16157124 | RR-TB | lineage4.1.1.3 | None | SRR28859954 | Sensitive | lineage4.1.1.3 | None | ERR4813561 | HR-TB | lineage4.1.1.3 | None | ERR4025013 | HR-TB | lineage4.1.1.3 | None | SRR30333237 | Sensitive | lineage4.1.1.3 | None | SRR28409678 | Sensitive | lineage4.1.1.3 | None | ERR4819950 | MDR-TB | lineage4.1.1.3 | gb | ERR3148168 | HR-TB | lineage4.1.1.3 | mx | ERR3148230 | Sensitive | lineage4.1.1.3 | mx | SRR16370418 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29267200 | Sensitive | lineage4.1.1.3 | None | SRR28705416 | MDR-TB | lineage4.1.1.3 | None | ERR3287575 | HR-TB | lineage4.1.1.3 | pe | ERR3287601 | MDR-TB | lineage4.1.1.3 | pe | ERR12117978 | MDR-TB | lineage4.1.1.3 | None | SRR27980490 | MDR-TB | lineage4.1.1.3 | None | ERR4812714 | MDR-TB | lineage4.1.1.3 | pe | SRR28389842 | Sensitive | lineage4.1.1.3 | None | ERR3287867 | Pre-XDR-TB | lineage4.1.1.3 | pe | SRR28393392 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR779853 | Sensitive | lineage4.1.1.3 | pe | SRR28393654 | MDR-TB | lineage4.1.1.3 | None | ERR4813032 | RR-TB | lineage4.1.1.3 | pe | ERR751510 | MDR-TB | lineage4.1.1.3 | pe | ERR4813199 | Pre-XDR-TB | lineage4.1.1.3 | pe | ERR751392 | MDR-TB | lineage4.1.1.3 | pe | ERR779859 | HR-TB | lineage4.1.1.3 | pe | SRR30049956 | Sensitive | lineage4.1.1.3 | None | ERR4813336 | MDR-TB | lineage4.1.1.3 | None | ERR751404 | MDR-TB | lineage4.1.1.3 | pe | ERR4812297 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR4813459 | MDR-TB | lineage4.1.1.3 | pe | SRR28393884 | Pre-XDR-TB | lineage4.1.1.3 | None | SAMEA2535095 | HR-TB | lineage4.1.1.3 | None | SRR29217207 | Sensitive | lineage4.1.1.3 | None | ERR12118065 | MDR-TB | lineage4.1.1.3 | None | SAMN02585928 | Sensitive | lineage4.1.1.3 | za | SRR6855929 | Sensitive | lineage4.1.1.3 | None | SRR28393443 | MDR-TB | lineage4.1.1.3 | None | SRR28393545 | MDR-TB | lineage4.1.1.3 | None | ERR6866036 | MDR-TB | lineage4.1.1.3 | None | ERR13285225 | Sensitive | lineage4.1.1.3 | None | ERR8774193 | Sensitive | lineage4.1.1.3 | None | ERR11465772 | Sensitive | lineage4.1.1.3 | None | ERR553046 | HR-TB | lineage4.1.1.3 | None | ERR4813219 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR28357662 | Other | lineage4.1.1.3 | None | ERR8774289 | MDR-TB | lineage4.1.1.3 | None | SRR18912072 | Sensitive | lineage4.1.1.3 | None | SRR1181259 | Sensitive | lineage4.1.1.3 | None | ERR3287383 | MDR-TB | lineage4.1.1.3 | pe | SRR18665455 | Sensitive | lineage4.1.1.3 | None | SRR6856001 | Sensitive | lineage4.1.1.3 | None | ERR553045_ERR553047_ERR553046 | HR-TB | lineage4.1.1.3 | None | SRR28375402 | Sensitive | lineage4.1.1.3 | None | ERR4813094 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR4178202 | Sensitive | lineage4.1.1.3 | None | SRR18665442 | MDR-TB | lineage4.1.1.3 | None | SRR26112306 | Sensitive | lineage4.1.1.3 | None | SRR16370572 | Sensitive | lineage4.1.1.3 | None | ERR3275515 | Sensitive | lineage4.1.1.3 | nl | ERR2446396 | Sensitive | lineage4.1.1.3 | nl | ERR11465107 | Sensitive | lineage4.1.1.3 | None | SRR29893831 | Sensitive | lineage4.1.1.3 | None | SRR28393391 | MDR-TB | lineage4.1.1.3 | None | SRR28393619 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29051280 | HR-TB | lineage4.1.1.3 | None | ERR13260002 | MDR-TB | lineage4.1.1.3 | None | ERR6052071 | Sensitive | lineage4.1.1.3 | None | SRR30340066 | Sensitive | lineage4.1.1.3 | None | ERR13290018 | Other | lineage4.1.1.3 | None | ERR13285226 | Sensitive | lineage4.1.1.3 | None | ERR13261647 | MDR-TB | lineage4.1.1.3 | None | SRR18665439 | Sensitive | lineage4.1.1.3 | None | SRR29053129 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR28389865 | MDR-TB | lineage4.1.1.3 | None | ERR4813213 | Pre-XDR-TB | lineage4.1.1.3 | pe | ERR4024920 | MDR-TB | lineage4.1.1.3 | None | ERR3287516 | MDR-TB | lineage4.1.1.3 | pe | ERR3287675 | RR-TB | lineage4.1.1.3 | pe | ERR4812697 | HR-TB | lineage4.1.1.3 | pe | SRR28044440 | Other | lineage4.1.1.3 | None | ERR3287814 | MDR-TB | lineage4.1.1.3 | pe | ERR3287883 | MDR-TB | lineage4.1.1.3 | pe | SRR28514695 | Sensitive | lineage4.1.1.3 | None | SRR28393382 | MDR-TB | lineage4.1.1.3 | None | SRR28393792 | MDR-TB | lineage4.1.1.3 | None | SRR28389884 | Pre-XDR-TB | lineage2.2.1.2;lineage4.1.1.3 | None | ERR4813052 | MDR-TB | lineage4.1.1.3 | None | SRR28705413 | Other | lineage4.1.1.3 | None | SRR28357656 | Other | lineage4.1.1.3 | None | SRR28389859 | Sensitive | lineage4.1.1.3 | None | ERR775312 | HR-TB | lineage4.1.1.3 | pe | SRR28389885 | MDR-TB | lineage4.1.1.3 | None | ERR4813420 | Pre-XDR-TB | lineage4.1.1.3 | pe | SRR28389890 | Other | lineage4.1.1.3 | None | ERR751584 | MDR-TB | lineage4.1.1.3 | pe | ERR775343 | HR-TB | lineage4.1.1.3 | pe | ERR4813453 | MDR-TB | lineage4.1.1.3 | pe | ERR4812817 | MDR-TB | lineage4.1.1.3 | None | ERR779881 | HR-TB | lineage4.1.1.3 | pe | ERR4813174 | Pre-XDR-TB | lineage4.1.1.3 | pe | ERR4813316 | MDR-TB | lineage4.1.1.3 | None | ERR553045 | HR-TB | lineage4.1.1.3 | None | ERR8975496 | Sensitive | lineage4.1.1.3 | None | ERR8975497 | Sensitive | lineage4.1.1.3 | None | SRR2100145 | Sensitive | lineage4.1.1.3 | None | SRR2101747 | Sensitive | lineage4.1.1.3 | None | ERR2516605 | MDR-TB | lineage4.1.1.3 | pe | ERR2516625 | Pre-XDR-TB | lineage4.1.1.3 | pe | ERR2516515 | Sensitive | lineage4.1.1.3 | pe | ERR2516728 | Pre-XDR-TB | lineage4.1.1.3 | pe | ERR2510147 | HR-TB | lineage4.1.1.3 | pe | ERR2510144 | HR-TB | lineage4.1.1.3 | pe | ERR2510222 | HR-TB | lineage4.1.1.3 | pe | ERR2513707 | Sensitive | lineage4.1.1.3 | gb | ERR2513105 | Sensitive | lineage4.1.1.3 | gb | ERR2515116 | Sensitive | lineage4.1.1.3 | za | ERR2515435 | Sensitive | lineage4.1.1.3 | za | ERR2515320 | Sensitive | lineage4.1.1.3 | za | ERR2515277 | RR-TB | lineage4.1.1.3 | za | SRR1181060 | Sensitive | lineage4.1.1.3 | None | ERR1034714 | MDR-TB | lineage4.1.1.3 | pe | ERR1034741 | HR-TB | lineage4.1.1.3 | pe | SAMN02585954 | Sensitive | lineage4.1.1.3 | za | SRR26111909 | Other | lineage4.1.1.3 | None | SRR16915730 | RR-TB | lineage4.1.1.3 | None | ERR6865321 | Sensitive | lineage4.1.1.3 | None | SRR30182407 | MDR-TB | lineage4.1.1.3 | None | SRR30049952 | Other | lineage4.1.1.3 | None | SRR29055702 | Sensitive | lineage4.1.1.3 | None | SRR28394046 | MDR-TB | lineage4.1.1.3 | None | SRR22248474 | Sensitive | lineage4.1.1.3 | None | SRR1184012 | Other | lineage4.1.1.3 | None | SRR22248483 | Sensitive | lineage4.1.1.3 | None | SRR1183066 | Sensitive | lineage4.1.1.3 | None | ERR3287415 | MDR-TB | lineage4.1.1.3 | pe | ERR3287331 | Pre-XDR-TB | lineage4.1.1.3 | pe | ERR3287863 | Pre-XDR-TB | lineage4.1.1.3 | pe | ERR13292244 | Sensitive | lineage4.1.1.3 | None | ERR3287495 | Pre-XDR-TB | lineage4.1.1.3 | pe | SRR6896213 | Sensitive | lineage4.1.1.3 | None | ERR9029872 | Pre-XDR-TB | lineage4.1.1.3;lineage4.3.4.2 | None | ERR7911344 | MDR-TB | lineage4.1.1.3 | pe | SRR28389899 | Sensitive | lineage4.1.1.3 | None | SRR28381187 | Sensitive | lineage4.1.1.3 | None | SRR28389869 | MDR-TB | lineage4.1.1.3 | None | SRR18665464 | MDR-TB | lineage4.1.1.3 | None | SRR29053263 | Sensitive | lineage4.1.1.3 | None | SRR28389831 | Other | lineage4.1.1.3 | None | SRR30340067 | Other | lineage4.1.1.3 | None | SRR29217219 | Sensitive | lineage4.1.1.3 | None | SRR7068987 | Sensitive | lineage4.1.1.3 | None | ERR4024562 | Sensitive | lineage4.1.1.3 | None | SRR21658390 | Sensitive | lineage4.1.1.3 | None | ERR4024838 | MDR-TB | lineage4.1.1.3 | None | ERR4813699 | MDR-TB | lineage4.1.1.3 | None |
|---|
