Run ID: SRR12830401
Sample name:
Date: 03-04-2023 06:59:21
Number of reads: 521911
Percentage reads mapped: 99.83
Strain: lineage4.3.3
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.3 | Euro-American (LAM) | mainly-LAM | None | 1.0 |
lineage4.3.3 | Euro-American (LAM) | LAM;T | RD115 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8040 | p.Gly247Ser | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
rpoB | 761989 | p.Ala728Glu | missense_variant | 0.12 |
rpoB | 761992 | p.Ile729Ser | missense_variant | 0.11 |
rpoC | 764995 | c.1626C>G | synonymous_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474445 | n.788G>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474921 | n.1264C>T | non_coding_transcript_exon_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102308 | c.735G>A | synonymous_variant | 1.0 |
ndh | 2102817 | c.226C>T | synonymous_variant | 0.12 |
Rv1979c | 2222760 | c.405T>C | synonymous_variant | 0.14 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
Rv1979c | 2223321 | c.-157G>T | upstream_gene_variant | 0.12 |
kasA | 2518919 | p.Gly269Ser | missense_variant | 1.0 |
pepQ | 2859396 | c.1023A>G | synonymous_variant | 0.12 |
thyA | 3073868 | p.Thr202Ala | missense_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ald | 3086856 | p.Glu13Lys | missense_variant | 0.11 |
ald | 3087113 | c.294C>T | synonymous_variant | 0.12 |
ald | 3087774 | p.Pro319Thr | missense_variant | 1.0 |
Rv3083 | 3449541 | c.1038C>T | synonymous_variant | 0.12 |
Rv3083 | 3449854 | p.Met451Val | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 0.96 |
rpoA | 3877873 | p.Gly212Val | missense_variant | 0.11 |
clpC1 | 4038287 | c.2418C>T | synonymous_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4245188 | c.1956G>T | synonymous_variant | 0.11 |
embB | 4248853 | c.2340G>T | synonymous_variant | 0.15 |
embB | 4248871 | c.2358C>A | synonymous_variant | 0.15 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408156 | p.Leu16Arg | missense_variant | 1.0 |