Run ID: SRR12830408
Sample name:
Date: 03-04-2023 06:59:36
Number of reads: 484939
Percentage reads mapped: 99.78
Strain: lineage4.3.3
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.3 | Euro-American (LAM) | mainly-LAM | None | 1.0 |
lineage4.3.3 | Euro-American (LAM) | LAM;T | RD115 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7288 | c.-14C>A | upstream_gene_variant | 0.11 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 7589 | c.288G>T | synonymous_variant | 0.12 |
gyrA | 8040 | p.Gly247Ser | missense_variant | 1.0 |
gyrA | 8383 | p.Leu361Pro | missense_variant | 0.13 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491387 | p.Leu202His | missense_variant | 0.13 |
rpoB | 760666 | p.Gln287Arg | missense_variant | 0.11 |
rpoB | 761338 | p.Arg511His | missense_variant | 0.12 |
rpoC | 763570 | c.201G>T | synonymous_variant | 0.11 |
rpoC | 764995 | c.1626C>G | synonymous_variant | 1.0 |
rpoC | 765382 | c.2013G>T | synonymous_variant | 0.12 |
rpoC | 765404 | c.2035C>T | synonymous_variant | 0.11 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776279 | c.2202C>T | synonymous_variant | 0.17 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472337 | n.492C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1473473 | n.-185A>G | upstream_gene_variant | 0.1 |
rrl | 1474921 | n.1264C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475268 | n.1611T>A | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476678 | n.3021G>A | non_coding_transcript_exon_variant | 0.12 |
fabG1 | 1673300 | c.-140G>A | upstream_gene_variant | 0.15 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2101775 | p.Ser423Asn | missense_variant | 0.11 |
ndh | 2102308 | c.735G>A | synonymous_variant | 1.0 |
ndh | 2102628 | p.Lys139Gln | missense_variant | 0.11 |
PPE35 | 2169632 | c.981C>A | synonymous_variant | 0.12 |
PPE35 | 2170074 | p.Ala180Val | missense_variant | 0.12 |
PPE35 | 2170263 | p.Leu117Pro | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518919 | p.Gly269Ser | missense_variant | 1.0 |
ahpC | 2726700 | p.Ser170Pro | missense_variant | 0.11 |
Rv2752c | 3066328 | c.-137T>C | upstream_gene_variant | 0.11 |
thyA | 3073868 | p.Thr202Ala | missense_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
Rv3083 | 3449854 | p.Met451Val | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
clpC1 | 4038287 | c.2418C>T | synonymous_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
aftB | 4268507 | c.330G>T | synonymous_variant | 0.12 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408156 | p.Leu16Arg | missense_variant | 1.0 |