Run ID: SRR13861434
Sample name:
Date: 03-04-2023 09:31:44
Number of reads: 445267
Percentage reads mapped: 44.57
Strain: lineage4.9
Drug-resistance: RR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761135 | p.Leu443Phe | missense_variant | 0.2 | rifampicin |
rrs | 1472307 | n.462C>T | non_coding_transcript_exon_variant | 0.19 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6242 | p.Arg335Lys | missense_variant | 0.18 |
gyrB | 6250 | c.1011A>G | synonymous_variant | 0.18 |
gyrB | 6253 | c.1014G>C | synonymous_variant | 0.18 |
gyrA | 6634 | c.-668T>C | upstream_gene_variant | 0.18 |
gyrA | 6637 | c.-665T>G | upstream_gene_variant | 0.18 |
gyrA | 6640 | c.-662A>G | upstream_gene_variant | 0.19 |
gyrA | 6649 | c.-653T>C | upstream_gene_variant | 0.22 |
gyrA | 6652 | c.-650C>G | upstream_gene_variant | 0.21 |
gyrA | 6655 | c.-647T>C | upstream_gene_variant | 0.19 |
gyrA | 6670 | c.-632G>C | upstream_gene_variant | 0.25 |
gyrA | 6673 | c.-629A>C | upstream_gene_variant | 0.25 |
gyrA | 6700 | c.-602T>C | upstream_gene_variant | 0.26 |
gyrA | 6703 | c.-599G>C | upstream_gene_variant | 0.26 |
gyrA | 6706 | c.-596G>A | upstream_gene_variant | 0.26 |
gyrA | 6709 | c.-593A>G | upstream_gene_variant | 0.26 |
gyrA | 6712 | c.-590G>C | upstream_gene_variant | 0.26 |
gyrA | 6727 | c.-575G>T | upstream_gene_variant | 0.31 |
gyrA | 6728 | c.-574_-572delCTAinsTTG | upstream_gene_variant | 0.31 |
gyrA | 6745 | c.-557T>G | upstream_gene_variant | 0.25 |
gyrA | 6760 | c.-542G>C | upstream_gene_variant | 0.27 |
gyrA | 6778 | c.-524C>T | upstream_gene_variant | 0.23 |
gyrA | 6793 | c.-509T>C | upstream_gene_variant | 0.21 |
gyrB | 6797 | p.Gly520Thr | missense_variant | 0.17 |
gyrA | 6824 | c.-478C>T | upstream_gene_variant | 0.14 |
gyrA | 6841 | c.-461T>C | upstream_gene_variant | 0.14 |
gyrA | 6844 | c.-458T>G | upstream_gene_variant | 0.13 |
gyrA | 6856 | c.-446T>C | upstream_gene_variant | 0.13 |
gyrA | 6862 | c.-440C>G | upstream_gene_variant | 0.13 |
gyrA | 7664 | c.363T>C | synonymous_variant | 0.13 |
gyrA | 7694 | c.393A>G | synonymous_variant | 0.17 |
gyrA | 7710 | c.409T>C | synonymous_variant | 0.19 |
gyrA | 7715 | c.414G>C | synonymous_variant | 0.19 |
gyrA | 7728 | c.427_429delAGGinsCGC | synonymous_variant | 0.16 |
gyrA | 7799 | c.498A>G | synonymous_variant | 0.14 |
gyrA | 7835 | c.534A>G | synonymous_variant | 0.14 |
gyrA | 7838 | c.537C>G | synonymous_variant | 0.15 |
gyrA | 8294 | c.993T>C | synonymous_variant | 0.15 |
gyrA | 8324 | c.1023T>C | synonymous_variant | 0.22 |
gyrA | 8339 | c.1038A>G | synonymous_variant | 0.22 |
gyrA | 8342 | c.1041G>C | synonymous_variant | 0.2 |
gyrA | 8366 | c.1065G>C | synonymous_variant | 0.22 |
gyrA | 8375 | c.1074G>C | synonymous_variant | 0.22 |
gyrA | 8391 | p.Tyr364His | missense_variant | 0.19 |
gyrA | 8399 | c.1098T>C | synonymous_variant | 0.2 |
gyrA | 8420 | c.1119T>C | synonymous_variant | 0.19 |
gyrA | 8423 | c.1122G>C | synonymous_variant | 0.2 |
gyrA | 8442 | c.1141C>T | synonymous_variant | 0.13 |
gyrA | 8453 | c.1152A>C | synonymous_variant | 0.18 |
gyrA | 8462 | c.1161A>G | synonymous_variant | 0.18 |
gyrA | 8471 | c.1170T>C | synonymous_variant | 0.16 |
gyrA | 8480 | c.1179C>T | synonymous_variant | 0.16 |
gyrA | 8486 | c.1185T>C | synonymous_variant | 0.16 |
gyrA | 8489 | c.1188A>G | synonymous_variant | 0.17 |
gyrA | 8498 | c.1197C>T | synonymous_variant | 0.19 |
gyrA | 8504 | c.1203G>C | synonymous_variant | 0.2 |
gyrA | 8516 | c.1215T>C | synonymous_variant | 0.18 |
gyrA | 8519 | c.1218A>C | synonymous_variant | 0.18 |
gyrA | 8537 | c.1236G>A | synonymous_variant | 0.17 |
gyrA | 8546 | c.1245T>C | synonymous_variant | 0.19 |
gyrA | 8552 | c.1251C>G | synonymous_variant | 0.14 |
gyrA | 8556 | p.Ala419His | missense_variant | 0.14 |
gyrA | 8561 | c.1260A>C | synonymous_variant | 0.21 |
gyrA | 8562 | c.1261C>T | synonymous_variant | 0.14 |
gyrA | 8867 | c.1566A>G | synonymous_variant | 0.14 |
gyrA | 8870 | c.1569G>C | synonymous_variant | 0.14 |
gyrA | 8873 | c.1572A>C | synonymous_variant | 0.14 |
gyrA | 8897 | c.1596T>C | synonymous_variant | 0.17 |
gyrA | 8903 | c.1602T>C | synonymous_variant | 0.17 |
gyrA | 8915 | c.1614A>G | synonymous_variant | 0.17 |
gyrA | 8939 | c.1638T>C | synonymous_variant | 0.15 |
gyrA | 8942 | c.1641G>C | synonymous_variant | 0.14 |
gyrA | 8987 | c.1686C>G | synonymous_variant | 0.14 |
gyrA | 8990 | c.1689C>G | synonymous_variant | 0.15 |
fgd1 | 491091 | c.309T>C | synonymous_variant | 0.13 |
fgd1 | 491106 | c.324T>C | synonymous_variant | 0.23 |
fgd1 | 491121 | c.339A>G | synonymous_variant | 0.23 |
fgd1 | 491137 | p.Glu119Gln | missense_variant | 0.23 |
fgd1 | 491144 | p.Ala121Glu | missense_variant | 0.23 |
fgd1 | 491166 | c.384G>C | synonymous_variant | 0.25 |
fgd1 | 491181 | c.399T>C | synonymous_variant | 0.18 |
fgd1 | 491191 | p.Gly137Arg | missense_variant | 0.18 |
fgd1 | 491194 | c.412_414delCTAinsTTG | synonymous_variant | 0.2 |
fgd1 | 491202 | c.420G>C | synonymous_variant | 0.17 |
fgd1 | 491203 | p.Gln141Glu | missense_variant | 0.18 |
fgd1 | 491212 | p.Ser144Arg | missense_variant | 0.18 |
fgd1 | 491217 | c.435T>C | synonymous_variant | 0.15 |
fgd1 | 491232 | c.450T>C | synonymous_variant | 0.14 |
fgd1 | 491244 | c.462T>C | synonymous_variant | 0.18 |
fgd1 | 491295 | c.513C>G | synonymous_variant | 0.13 |
fgd1 | 491301 | c.519C>T | synonymous_variant | 0.12 |
fgd1 | 491508 | c.726A>G | synonymous_variant | 0.15 |
fgd1 | 491509 | c.727T>C | synonymous_variant | 0.15 |
fgd1 | 491512 | p.Asn244Glu | missense_variant | 0.14 |
fgd1 | 491526 | c.744T>C | synonymous_variant | 0.14 |
fgd1 | 491547 | c.765A>C | synonymous_variant | 0.14 |
fgd1 | 491550 | c.768T>C | synonymous_variant | 0.15 |
rpoB | 761015 | c.1209G>C | synonymous_variant | 0.14 |
rpoB | 761094 | c.1288C>T | synonymous_variant | 0.13 |
rpoB | 761097 | p.Ser431Cys | missense_variant | 0.13 |
rpoB | 761102 | c.1296A>G | synonymous_variant | 0.19 |
rpoB | 761150 | c.1344A>C | synonymous_variant | 0.13 |
rpoB | 761165 | c.1359G>C | synonymous_variant | 0.13 |
rpoB | 761180 | c.1374A>C | synonymous_variant | 0.14 |
rpoB | 761222 | c.1416G>C | synonymous_variant | 0.25 |
rpoB | 761249 | c.1443A>G | synonymous_variant | 0.15 |
rpoB | 761255 | c.1449T>G | synonymous_variant | 0.17 |
rpoB | 761261 | c.1455G>T | synonymous_variant | 0.15 |
rpoB | 761873 | c.2067A>G | synonymous_variant | 0.14 |
rpoB | 761891 | c.2085G>C | synonymous_variant | 0.13 |
rpoB | 761909 | c.2103T>C | synonymous_variant | 0.13 |
rpoB | 761912 | c.2106T>C | synonymous_variant | 0.14 |
rpoB | 761915 | p.Asp703Glu | missense_variant | 0.15 |
rpoB | 761916 | p.Asp704Asn | missense_variant | 0.15 |
rpoB | 761954 | c.2148C>G | synonymous_variant | 0.16 |
rpoC | 762698 | c.-672C>T | upstream_gene_variant | 1.0 |
rpoB | 762958 | p.Leu1051Pro | missense_variant | 0.9 |
rpoC | 763202 | c.-168A>C | upstream_gene_variant | 0.17 |
rpoC | 763835 | p.Ala156Met | missense_variant | 0.13 |
rpoC | 764040 | p.Ser224Asn | missense_variant | 0.19 |
rpoC | 764044 | c.675T>C | synonymous_variant | 0.2 |
rpoC | 764059 | c.690G>C | synonymous_variant | 0.2 |
rpoC | 764381 | p.Ser338Thr | missense_variant | 0.12 |
rpoC | 764858 | c.1489T>C | synonymous_variant | 0.25 |
rpoC | 764872 | c.1503A>G | synonymous_variant | 0.2 |
rpoC | 764911 | c.1542A>G | synonymous_variant | 0.18 |
rpoC | 764923 | c.1554A>G | synonymous_variant | 0.17 |
rpoC | 764932 | c.1563C>A | synonymous_variant | 0.16 |
rpoC | 764968 | c.1599T>C | synonymous_variant | 0.17 |
rpoC | 765007 | c.1638T>G | synonymous_variant | 0.21 |
rpoC | 765019 | c.1650A>G | synonymous_variant | 0.18 |
rpoC | 765022 | c.1653G>C | synonymous_variant | 0.18 |
rpoC | 765034 | c.1665T>C | synonymous_variant | 0.16 |
rpoC | 765508 | c.2139C>G | synonymous_variant | 0.18 |
rpoC | 765553 | c.2184C>T | synonymous_variant | 0.19 |
rpoC | 765556 | c.2187G>C | synonymous_variant | 0.2 |
rpoC | 765559 | c.2190G>C | synonymous_variant | 0.19 |
rpoC | 765578 | c.2209C>T | synonymous_variant | 0.22 |
rpoC | 765583 | c.2214G>T | synonymous_variant | 0.16 |
rpoC | 765631 | p.Asp754Glu | missense_variant | 0.14 |
rpoC | 765734 | c.2365T>C | synonymous_variant | 0.14 |
rpoC | 765739 | c.2370G>C | synonymous_variant | 0.14 |
rpoC | 765751 | c.2382C>G | synonymous_variant | 0.14 |
rpoC | 765753 | p.Asp795Ala | missense_variant | 0.14 |
rpoC | 766630 | c.3261G>C | synonymous_variant | 0.18 |
rpoC | 766645 | c.3276A>G | synonymous_variant | 0.22 |
rpoC | 766651 | c.3282T>C | synonymous_variant | 0.2 |
rpoC | 766657 | c.3288A>G | synonymous_variant | 0.2 |
rpoC | 766672 | c.3303T>C | synonymous_variant | 0.2 |
rpoC | 766738 | c.3369G>T | synonymous_variant | 0.15 |
rpoC | 766750 | c.3381C>G | synonymous_variant | 0.23 |
rpoC | 766765 | c.3396A>C | synonymous_variant | 0.15 |
rpoC | 766801 | c.3432C>A | synonymous_variant | 0.15 |
rpoC | 766804 | c.3435A>G | synonymous_variant | 0.15 |
rpoC | 766861 | c.3492G>C | synonymous_variant | 0.18 |
rpoC | 766864 | c.3495G>C | synonymous_variant | 0.17 |
rpsL | 781892 | c.333A>G | synonymous_variant | 0.15 |
rpsL | 781898 | c.339A>T | synonymous_variant | 0.15 |
rpsL | 781916 | c.357T>C | synonymous_variant | 0.14 |
rplC | 801249 | c.441T>G | synonymous_variant | 0.22 |
rplC | 801255 | c.447C>T | synonymous_variant | 0.3 |
rplC | 801267 | c.459A>C | synonymous_variant | 0.25 |
rplC | 801270 | c.462T>C | synonymous_variant | 0.25 |
rplC | 801276 | c.468G>C | synonymous_variant | 0.25 |
rplC | 801279 | c.471G>C | synonymous_variant | 0.25 |
rplC | 801282 | c.474G>C | synonymous_variant | 0.25 |
rplC | 801301 | c.493C>A | synonymous_variant | 0.21 |
rplC | 801312 | c.504G>C | synonymous_variant | 0.23 |
rplC | 801324 | c.516T>C | synonymous_variant | 0.23 |
rplC | 801336 | c.528C>G | synonymous_variant | 0.23 |
rplC | 801339 | c.531T>C | synonymous_variant | 0.15 |
rplC | 801341 | p.Leu178Gln | missense_variant | 0.15 |
rplC | 801357 | c.549T>C | synonymous_variant | 0.13 |
rplC | 801367 | p.Ala187Thr | missense_variant | 0.13 |
fbiC | 1302962 | p.Ala11Gly | missense_variant | 1.0 |
fbiC | 1303706 | p.Leu259Arg | missense_variant | 1.0 |
fbiC | 1304811 | c.1881C>G | synonymous_variant | 0.14 |
fbiC | 1304817 | c.1887T>C | synonymous_variant | 0.13 |
fbiC | 1304853 | c.1923C>G | synonymous_variant | 0.16 |
fbiC | 1304856 | c.1926C>G | synonymous_variant | 0.15 |
fbiC | 1305384 | c.2454G>T | synonymous_variant | 0.88 |
fbiC | 1305411 | c.2481C>T | synonymous_variant | 0.14 |
fbiC | 1305420 | c.2490C>G | synonymous_variant | 0.14 |
fbiC | 1305423 | c.2493T>C | synonymous_variant | 0.14 |
fbiC | 1305430 | p.Val834Thr | missense_variant | 0.13 |
fbiC | 1305453 | c.2523C>G | synonymous_variant | 0.12 |
Rv1258c | 1406724 | p.Gln206Leu | missense_variant | 1.0 |
embR | 1416800 | p.Ala183Gly | missense_variant | 1.0 |
rrl | 1473756 | n.99G>A | non_coding_transcript_exon_variant | 0.2 |
rrl | 1473758 | n.101G>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1473806 | n.149C>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1473813 | n.156C>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1473839 | n.182G>T | non_coding_transcript_exon_variant | 0.23 |
rrl | 1473877 | n.220G>A | non_coding_transcript_exon_variant | 0.18 |
rrl | 1473944 | n.287G>A | non_coding_transcript_exon_variant | 0.2 |
rrl | 1473945 | n.288T>C | non_coding_transcript_exon_variant | 0.21 |
rrl | 1473995 | n.338G>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474009 | n.352A>G | non_coding_transcript_exon_variant | 0.21 |
rrl | 1474012 | n.355C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474054 | n.397T>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474056 | n.399T>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474103 | n.446A>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1474104 | n.447G>A | non_coding_transcript_exon_variant | 0.21 |
rrl | 1474111 | n.454T>C | non_coding_transcript_exon_variant | 0.21 |
rrl | 1474112 | n.455T>A | non_coding_transcript_exon_variant | 0.21 |
rrl | 1474140 | n.483C>T | non_coding_transcript_exon_variant | 0.27 |
rrl | 1474151 | n.494C>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1474181 | n.524C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474249 | n.592G>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1474308 | n.651G>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1474310 | n.653T>G | non_coding_transcript_exon_variant | 0.3 |
rrl | 1474356 | n.699T>C | non_coding_transcript_exon_variant | 0.44 |
rrl | 1474362 | n.705A>G | non_coding_transcript_exon_variant | 0.44 |
rrl | 1474376 | n.719T>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474409 | n.756_766delACCCACACGCG | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474427 | n.770A>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474434 | n.777T>G | non_coding_transcript_exon_variant | 0.23 |
rrl | 1474437 | n.781_782delAA | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1474812 | n.1155G>A | non_coding_transcript_exon_variant | 0.19 |
rrl | 1474823 | n.1166C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1474831 | n.1174A>G | non_coding_transcript_exon_variant | 0.19 |
rrl | 1474904 | n.1247G>A | non_coding_transcript_exon_variant | 0.13 |
rrl | 1474956 | n.1299C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474959 | n.1302C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474962 | n.1306delG | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474970 | n.1313G>A | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475313 | n.1656G>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1475315 | n.1658A>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475333 | n.1676T>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475419 | n.1762C>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1475483 | n.1826C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475505 | n.1848G>A | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475526 | n.1869C>A | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476336 | n.2679C>T | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476356 | n.2699C>A | non_coding_transcript_exon_variant | 0.41 |
rrl | 1476357 | n.2700T>C | non_coding_transcript_exon_variant | 0.41 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.41 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.41 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.42 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.41 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.41 |
rrl | 1476383 | n.2726T>G | non_coding_transcript_exon_variant | 0.41 |
rrl | 1476384 | n.2727G>T | non_coding_transcript_exon_variant | 0.41 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.43 |
rrl | 1476411 | n.2754G>A | non_coding_transcript_exon_variant | 0.43 |
rrl | 1476425 | n.2768G>A | non_coding_transcript_exon_variant | 0.42 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476442 | n.2785T>A | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476443 | n.2786G>T | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476455 | n.2798C>A | non_coding_transcript_exon_variant | 0.41 |
rrl | 1476456 | n.2799A>T | non_coding_transcript_exon_variant | 0.41 |
rrl | 1476463 | n.2806C>T | non_coding_transcript_exon_variant | 0.35 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.33 |
fabG1 | 1673153 | c.-287C>G | upstream_gene_variant | 1.0 |
inhA | 1674654 | c.453G>C | synonymous_variant | 0.13 |
inhA | 1674718 | c.517A>C | synonymous_variant | 0.12 |
inhA | 1674771 | c.570C>G | synonymous_variant | 0.14 |
inhA | 1674816 | c.615T>C | synonymous_variant | 0.15 |
inhA | 1674818 | p.Ala206Val | missense_variant | 0.15 |
inhA | 1674828 | p.Glu209Asp | missense_variant | 0.15 |
inhA | 1674829 | p.Glu210Gln | missense_variant | 0.15 |
inhA | 1674834 | c.633C>G | synonymous_variant | 0.15 |
inhA | 1674836 | p.Gly212Ala | missense_variant | 0.15 |
inhA | 1674839 | p.Ala213Glu | missense_variant | 0.15 |
inhA | 1674848 | p.Gln216Arg | missense_variant | 0.17 |
inhA | 1674855 | c.654C>T | synonymous_variant | 0.15 |
inhA | 1674876 | c.675C>G | synonymous_variant | 0.13 |
rpsA | 1833489 | c.-53T>A | upstream_gene_variant | 0.29 |
rpsA | 1833495 | c.-47_-46insAATC | upstream_gene_variant | 0.22 |
rpsA | 1833500 | c.-41delC | upstream_gene_variant | 0.22 |
rpsA | 1833541 | c.-1T>C | upstream_gene_variant | 0.29 |
rpsA | 1833554 | p.Thr5Gly | missense_variant | 0.29 |
rpsA | 1833568 | c.27G>C | synonymous_variant | 0.22 |
rpsA | 1833589 | c.48A>T | synonymous_variant | 0.22 |
rpsA | 1833595 | c.54T>C | synonymous_variant | 0.2 |
rpsA | 1833619 | c.78A>C | synonymous_variant | 0.2 |
rpsA | 1833940 | c.399C>G | synonymous_variant | 0.14 |
rpsA | 1833970 | c.429G>C | synonymous_variant | 0.16 |
rpsA | 1833979 | c.438T>C | synonymous_variant | 0.17 |
rpsA | 1834000 | c.459G>C | synonymous_variant | 0.17 |
rpsA | 1834015 | c.474G>C | synonymous_variant | 0.13 |
rpsA | 1834073 | p.Lys178* | stop_gained | 0.94 |
rpsA | 1834249 | c.708T>C | synonymous_variant | 0.18 |
rpsA | 1834435 | c.894G>C | synonymous_variant | 0.17 |
rpsA | 1834451 | c.910T>C | synonymous_variant | 0.17 |
rpsA | 1834465 | c.924T>C | synonymous_variant | 0.2 |
rpsA | 1834468 | c.927A>G | synonymous_variant | 0.21 |
rpsA | 1834474 | c.933C>G | synonymous_variant | 0.21 |
rpsA | 1834489 | c.948T>C | synonymous_variant | 0.21 |
rpsA | 1834498 | c.957C>T | synonymous_variant | 0.21 |
rpsA | 1834528 | c.987T>C | synonymous_variant | 0.2 |
rpsA | 1834546 | c.1005T>C | synonymous_variant | 0.18 |
rpsA | 1834555 | c.1014T>C | synonymous_variant | 0.19 |
rpsA | 1834558 | c.1017C>G | synonymous_variant | 0.2 |
rpsA | 1834606 | c.1065C>G | synonymous_variant | 0.2 |
rpsA | 1834609 | c.1068T>C | synonymous_variant | 0.2 |
rpsA | 1834622 | c.1081_1083delTCGinsAGC | synonymous_variant | 0.2 |
rpsA | 1834633 | c.1092A>G | synonymous_variant | 0.22 |
rpsA | 1834639 | c.1098T>C | synonymous_variant | 0.21 |
rpsA | 1834666 | c.1125G>C | synonymous_variant | 0.22 |
rpsA | 1834669 | c.1128G>C | synonymous_variant | 0.22 |
rpsA | 1834688 | c.1147_1149delAGTinsTCC | synonymous_variant | 0.22 |
tlyA | 1917908 | c.-32C>G | upstream_gene_variant | 0.14 |
tlyA | 1917929 | c.-11T>C | upstream_gene_variant | 0.19 |
tlyA | 1917943 | p.Ala2Ser | missense_variant | 0.18 |
tlyA | 1917951 | c.12T>C | synonymous_variant | 0.18 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 0.18 |
tlyA | 1917981 | c.42G>C | synonymous_variant | 0.19 |
tlyA | 1917990 | c.51G>C | synonymous_variant | 0.19 |
tlyA | 1917993 | c.54A>G | synonymous_variant | 0.18 |
tlyA | 1917996 | c.57A>G | synonymous_variant | 0.19 |
tlyA | 1917999 | c.60T>C | synonymous_variant | 0.19 |
tlyA | 1918002 | c.63A>G | synonymous_variant | 0.19 |
tlyA | 1918036 | p.Arg33Ser | missense_variant | 0.13 |
ndh | 2101906 | c.1137G>C | synonymous_variant | 0.17 |
ndh | 2101915 | c.1128T>C | synonymous_variant | 0.18 |
ndh | 2101918 | c.1123_1125delAGGinsCGC | synonymous_variant | 0.17 |
ndh | 2101924 | c.1119T>G | synonymous_variant | 0.17 |
ndh | 2101939 | c.1104A>C | synonymous_variant | 0.22 |
ndh | 2101960 | c.1083A>G | synonymous_variant | 0.21 |
ndh | 2101966 | c.1077T>G | synonymous_variant | 0.21 |
ndh | 2101972 | c.1071G>C | synonymous_variant | 0.21 |
ndh | 2101978 | p.Asn355Asp | missense_variant | 0.21 |
ndh | 2101988 | p.Ala352Gly | missense_variant | 0.21 |
ndh | 2102009 | p.Ser345Asn | missense_variant | 0.21 |
ndh | 2102020 | c.1023A>G | synonymous_variant | 0.21 |
ndh | 2102023 | c.1020G>C | synonymous_variant | 0.21 |
ndh | 2102026 | c.1017G>C | synonymous_variant | 0.21 |
katG | 2155581 | c.531C>A | synonymous_variant | 0.14 |
katG | 2155590 | c.522A>G | synonymous_variant | 0.14 |
katG | 2155616 | p.Val166Ile | missense_variant | 0.12 |
katG | 2155637 | p.Leu159Ile | missense_variant | 0.17 |
katG | 2155641 | p.Lys157Asn | missense_variant | 0.15 |
katG | 2155677 | c.435C>G | synonymous_variant | 0.14 |
katG | 2155680 | c.432G>C | synonymous_variant | 0.14 |
katG | 2155691 | c.421T>C | synonymous_variant | 0.14 |
katG | 2155695 | p.Ala139Val | missense_variant | 0.15 |
katG | 2155701 | c.411C>T | synonymous_variant | 0.17 |
katG | 2155704 | c.408C>G | synonymous_variant | 0.15 |
katG | 2155716 | c.396T>C | synonymous_variant | 0.13 |
PPE35 | 2167669 | p.Phe982Leu | missense_variant | 1.0 |
kasA | 2519077 | c.963G>C | synonymous_variant | 0.12 |
kasA | 2519095 | c.981C>G | synonymous_variant | 0.14 |
kasA | 2519098 | c.984C>G | synonymous_variant | 0.14 |
kasA | 2519104 | c.990T>A | synonymous_variant | 0.14 |
kasA | 2519108 | p.Asp332Gln | missense_variant | 0.14 |
kasA | 2519111 | p.Gln333Glu | missense_variant | 0.14 |
kasA | 2519125 | c.1011C>T | synonymous_variant | 0.13 |
kasA | 2519137 | c.1023T>C | synonymous_variant | 0.15 |
kasA | 2519146 | c.1032C>A | synonymous_variant | 0.17 |
kasA | 2519152 | c.1038G>A | synonymous_variant | 0.13 |
kasA | 2519176 | c.1062G>A | synonymous_variant | 0.13 |
kasA | 2519215 | c.1101C>T | synonymous_variant | 0.12 |
folC | 2747040 | p.Ile187Val | missense_variant | 0.12 |
folC | 2747059 | c.540T>C | synonymous_variant | 0.13 |
folC | 2747086 | c.513A>C | synonymous_variant | 0.17 |
folC | 2747089 | c.510G>C | synonymous_variant | 0.17 |
Rv2752c | 3066234 | c.-43G>A | upstream_gene_variant | 0.94 |
fbiB | 3642276 | c.743delC | frameshift_variant | 1.0 |
fbiB | 3642593 | c.1059G>C | synonymous_variant | 0.18 |
fbiB | 3642602 | c.1068A>C | synonymous_variant | 0.18 |
fbiB | 3642605 | c.1071A>G | synonymous_variant | 0.15 |
fbiB | 3642614 | c.1080C>T | synonymous_variant | 0.18 |
fbiB | 3642620 | c.1086T>C | synonymous_variant | 0.18 |
fbiB | 3642656 | c.1122G>C | synonymous_variant | 0.15 |
fbiB | 3642659 | c.1125C>G | synonymous_variant | 0.14 |
fbiB | 3642662 | c.1128C>G | synonymous_variant | 0.14 |
fbiB | 3642668 | c.1134A>C | synonymous_variant | 0.14 |
rpoA | 3877818 | c.690A>G | synonymous_variant | 0.15 |
rpoA | 3877839 | c.669G>C | synonymous_variant | 0.17 |
rpoA | 3877857 | c.651G>A | synonymous_variant | 0.15 |
rpoA | 3877866 | c.642G>C | synonymous_variant | 0.15 |
rpoA | 3877872 | c.636C>T | synonymous_variant | 0.15 |
rpoA | 3877875 | c.633T>G | synonymous_variant | 0.15 |
rpoA | 3877899 | p.Ser203Thr | missense_variant | 0.15 |
rpoA | 3877905 | c.603A>G | synonymous_variant | 0.15 |
rpoA | 3877908 | p.Asn200Ser | missense_variant | 0.15 |
rpoA | 3878106 | c.402G>C | synonymous_variant | 0.13 |
rpoA | 3878111 | p.Lys133Gln | missense_variant | 0.87 |
rpoA | 3878271 | c.237T>C | synonymous_variant | 0.21 |
rpoA | 3878284 | p.Glu75Ala | missense_variant | 0.19 |
rpoA | 3878292 | c.216T>C | synonymous_variant | 0.18 |
rpoA | 3878298 | c.210A>G | synonymous_variant | 0.18 |
rpoA | 3878304 | c.204G>C | synonymous_variant | 0.19 |
rpoA | 3878313 | c.195G>C | synonymous_variant | 0.2 |
rpoA | 3878322 | c.186A>G | synonymous_variant | 0.19 |
rpoA | 3878331 | c.177A>G | synonymous_variant | 0.19 |
rpoA | 3878334 | c.174T>C | synonymous_variant | 0.19 |
rpoA | 3878337 | c.171T>C | synonymous_variant | 0.19 |
rpoA | 3878346 | c.162T>C | synonymous_variant | 0.19 |
rpoA | 3878364 | c.144A>G | synonymous_variant | 0.15 |
rpoA | 3878367 | c.141C>G | synonymous_variant | 0.15 |
rpoA | 3878370 | c.138T>C | synonymous_variant | 0.16 |
rpoA | 3878376 | c.132G>C | synonymous_variant | 0.15 |
rpoA | 3878385 | c.123C>G | synonymous_variant | 0.16 |
rpoA | 3878391 | c.117T>C | synonymous_variant | 0.18 |
rpoA | 3878396 | c.112C>T | synonymous_variant | 0.17 |
clpC1 | 4038812 | c.1893T>C | synonymous_variant | 0.2 |
clpC1 | 4038815 | c.1890G>T | synonymous_variant | 0.19 |
clpC1 | 4038851 | c.1854G>A | synonymous_variant | 0.29 |
clpC1 | 4038878 | c.1827A>G | synonymous_variant | 0.27 |
clpC1 | 4038908 | c.1797C>G | synonymous_variant | 0.32 |
clpC1 | 4038914 | c.1791G>C | synonymous_variant | 0.35 |
clpC1 | 4038923 | c.1782A>G | synonymous_variant | 0.28 |
clpC1 | 4038932 | c.1773G>C | synonymous_variant | 0.25 |
clpC1 | 4038953 | c.1752A>G | synonymous_variant | 0.31 |
clpC1 | 4038956 | c.1749T>C | synonymous_variant | 0.27 |
clpC1 | 4038965 | c.1740T>C | synonymous_variant | 0.31 |
clpC1 | 4038971 | c.1734T>C | synonymous_variant | 0.31 |
clpC1 | 4038974 | c.1731T>C | synonymous_variant | 0.31 |
clpC1 | 4038989 | c.1716T>C | synonymous_variant | 0.29 |
clpC1 | 4038997 | c.1708T>C | synonymous_variant | 0.29 |
clpC1 | 4039022 | c.1683A>G | synonymous_variant | 0.31 |
clpC1 | 4039073 | c.1632C>G | synonymous_variant | 0.36 |
clpC1 | 4039085 | c.1620A>G | synonymous_variant | 0.25 |
clpC1 | 4039090 | c.1615C>T | synonymous_variant | 0.21 |
clpC1 | 4039097 | c.1608G>C | synonymous_variant | 0.21 |
clpC1 | 4039103 | c.1602T>C | synonymous_variant | 0.15 |
clpC1 | 4039106 | c.1599G>C | synonymous_variant | 0.15 |
clpC1 | 4039112 | c.1593C>G | synonymous_variant | 0.17 |
clpC1 | 4039121 | c.1584T>C | synonymous_variant | 0.23 |
clpC1 | 4039124 | c.1581C>G | synonymous_variant | 0.23 |
clpC1 | 4039142 | c.1563A>G | synonymous_variant | 0.25 |
clpC1 | 4039145 | c.1560G>C | synonymous_variant | 0.25 |
clpC1 | 4039169 | p.Glu512Asp | missense_variant | 0.24 |
clpC1 | 4039172 | c.1533A>G | synonymous_variant | 0.24 |
clpC1 | 4039178 | c.1527G>C | synonymous_variant | 0.24 |
clpC1 | 4039183 | c.1522T>C | synonymous_variant | 0.27 |
clpC1 | 4039187 | c.1518G>C | synonymous_variant | 0.27 |
clpC1 | 4039190 | c.1515C>G | synonymous_variant | 0.27 |
clpC1 | 4039208 | c.1497C>G | synonymous_variant | 0.27 |
clpC1 | 4039226 | c.1479T>C | synonymous_variant | 0.21 |
clpC1 | 4039268 | c.1437C>G | synonymous_variant | 0.2 |
clpC1 | 4039274 | c.1431G>C | synonymous_variant | 0.2 |
clpC1 | 4039388 | c.1317C>A | synonymous_variant | 0.13 |
clpC1 | 4039430 | c.1275T>C | synonymous_variant | 0.14 |
clpC1 | 4039442 | c.1263A>G | synonymous_variant | 0.2 |
clpC1 | 4039448 | c.1257A>G | synonymous_variant | 0.21 |
clpC1 | 4039454 | c.1251A>G | synonymous_variant | 0.15 |
clpC1 | 4039463 | c.1242C>G | synonymous_variant | 0.14 |
clpC1 | 4039481 | c.1224T>G | synonymous_variant | 0.14 |
clpC1 | 4039484 | c.1221T>G | synonymous_variant | 0.14 |
clpC1 | 4039517 | c.1188C>G | synonymous_variant | 0.19 |
clpC1 | 4039524 | p.Phe394Tyr | missense_variant | 0.22 |
clpC1 | 4039526 | c.1179G>C | synonymous_variant | 0.22 |
clpC1 | 4039547 | c.1158C>G | synonymous_variant | 0.17 |
clpC1 | 4039553 | c.1152C>G | synonymous_variant | 0.17 |
clpC1 | 4039562 | c.1143C>G | synonymous_variant | 0.17 |
clpC1 | 4039565 | c.1140G>C | synonymous_variant | 0.17 |
clpC1 | 4039576 | p.Ala377Ser | missense_variant | 0.21 |
clpC1 | 4039577 | c.1128T>C | synonymous_variant | 0.22 |
clpC1 | 4039586 | c.1119G>C | synonymous_variant | 0.18 |
clpC1 | 4039610 | c.1095G>C | synonymous_variant | 0.2 |
clpC1 | 4039616 | c.1089G>C | synonymous_variant | 0.18 |
clpC1 | 4039622 | c.1083C>G | synonymous_variant | 0.16 |
clpC1 | 4040090 | c.613_615delTCTinsAGC | synonymous_variant | 0.16 |
clpC1 | 4040093 | c.612C>G | synonymous_variant | 0.16 |
clpC1 | 4040105 | c.600C>G | synonymous_variant | 0.15 |
clpC1 | 4040147 | c.558A>G | synonymous_variant | 0.21 |
clpC1 | 4040153 | c.552A>G | synonymous_variant | 0.28 |
clpC1 | 4040162 | c.543G>C | synonymous_variant | 0.28 |
clpC1 | 4040165 | c.540G>C | synonymous_variant | 0.28 |
clpC1 | 4040168 | c.537G>C | synonymous_variant | 0.26 |
clpC1 | 4040171 | c.534C>G | synonymous_variant | 0.26 |
clpC1 | 4040201 | c.504C>G | synonymous_variant | 0.29 |
clpC1 | 4040207 | c.498T>C | synonymous_variant | 0.31 |
clpC1 | 4040213 | c.490_492delTCTinsAGC | synonymous_variant | 0.29 |
clpC1 | 4040225 | c.480A>C | synonymous_variant | 0.31 |
clpC1 | 4040228 | c.477G>C | synonymous_variant | 0.31 |
clpC1 | 4040234 | c.471C>G | synonymous_variant | 0.31 |
clpC1 | 4040237 | c.468C>T | synonymous_variant | 0.31 |
clpC1 | 4040249 | c.456A>G | synonymous_variant | 0.33 |
clpC1 | 4040273 | c.432T>C | synonymous_variant | 0.29 |
clpC1 | 4040363 | c.342A>C | synonymous_variant | 0.21 |
clpC1 | 4040369 | c.336C>G | synonymous_variant | 0.2 |
clpC1 | 4040380 | c.325T>C | synonymous_variant | 0.21 |
clpC1 | 4040381 | c.324T>C | synonymous_variant | 0.21 |
clpC1 | 4040387 | c.318A>G | synonymous_variant | 0.23 |
clpC1 | 4040393 | c.312G>C | synonymous_variant | 0.25 |
clpC1 | 4040411 | c.294T>C | synonymous_variant | 0.2 |
clpC1 | 4040423 | c.282A>G | synonymous_variant | 0.14 |
clpC1 | 4040426 | c.279T>C | synonymous_variant | 0.14 |
clpC1 | 4040431 | c.274T>C | synonymous_variant | 0.15 |
panD | 4044090 | c.192C>T | synonymous_variant | 0.14 |
panD | 4044096 | c.186C>T | synonymous_variant | 0.14 |
panD | 4044120 | c.162A>G | synonymous_variant | 0.14 |
panD | 4044123 | c.159T>C | synonymous_variant | 0.14 |
panD | 4044138 | c.144T>C | synonymous_variant | 0.15 |
panD | 4044150 | c.132A>G | synonymous_variant | 0.17 |
embC | 4240543 | c.681G>C | synonymous_variant | 0.18 |
embC | 4240561 | c.699C>G | synonymous_variant | 0.17 |
embC | 4240574 | p.Val238Leu | missense_variant | 0.17 |
embC | 4240578 | p.Ala239Val | missense_variant | 0.17 |
embC | 4240582 | c.720C>G | synonymous_variant | 0.17 |
embC | 4240585 | c.723C>G | synonymous_variant | 0.17 |
embC | 4240591 | c.729C>G | synonymous_variant | 0.18 |
embC | 4240594 | c.732C>G | synonymous_variant | 0.17 |
embC | 4240600 | c.738G>C | synonymous_variant | 0.15 |
embC | 4240632 | p.Met257Thr | missense_variant | 0.14 |
embC | 4240654 | c.792C>T | synonymous_variant | 0.14 |
embC | 4240657 | c.795G>C | synonymous_variant | 0.14 |
embC | 4240671 | p.Thr270Ile | missense_variant | 0.14 |
embC | 4240726 | c.864G>C | synonymous_variant | 0.13 |
embA | 4242703 | c.-530C>T | upstream_gene_variant | 1.0 |
embA | 4244284 | p.Pro351Arg | missense_variant | 0.17 |
embA | 4244298 | p.Ser356Ala | missense_variant | 0.17 |
embA | 4244309 | c.1077C>G | synonymous_variant | 0.17 |
embA | 4244312 | c.1080T>G | synonymous_variant | 0.15 |
embA | 4244315 | c.1083G>C | synonymous_variant | 0.14 |
embA | 4244327 | c.1095T>C | synonymous_variant | 0.13 |
embA | 4244337 | p.Leu369Val | missense_variant | 0.14 |
embA | 4244342 | c.1110C>G | synonymous_variant | 0.14 |
embA | 4244366 | c.1134C>G | synonymous_variant | 0.14 |
embA | 4244372 | c.1140T>G | synonymous_variant | 0.14 |
embA | 4244378 | c.1146G>A | synonymous_variant | 0.14 |
embA | 4244396 | c.1164T>C | synonymous_variant | 0.14 |
embA | 4244412 | p.Val394Met | missense_variant | 0.15 |
embA | 4245137 | c.1905T>C | synonymous_variant | 0.13 |
embA | 4245182 | c.1950T>C | synonymous_variant | 0.15 |
embA | 4245194 | c.1962G>C | synonymous_variant | 0.15 |
embA | 4245198 | p.Leu656Ile | missense_variant | 0.14 |
embA | 4245215 | c.1983A>G | synonymous_variant | 0.14 |
embA | 4245222 | p.Tyr664Gln | missense_variant | 0.14 |
embA | 4245407 | c.2175G>C | synonymous_variant | 0.13 |
embB | 4245807 | c.-707_-705delTTAinsCTG | upstream_gene_variant | 0.15 |
embA | 4245820 | p.Ser863Thr | missense_variant | 0.15 |
embB | 4245830 | c.-684G>C | upstream_gene_variant | 0.14 |
embB | 4248143 | c.1630T>C | synonymous_variant | 0.15 |
embB | 4248157 | c.1644A>G | synonymous_variant | 0.16 |
embB | 4249144 | c.2631G>C | synonymous_variant | 1.0 |
embB | 4249469 | p.Leu986Met | missense_variant | 0.15 |
embB | 4249483 | c.2970C>G | synonymous_variant | 0.23 |
embB | 4249486 | c.2973T>G | synonymous_variant | 0.21 |
embB | 4249487 | c.2974T>C | synonymous_variant | 0.21 |
embB | 4249521 | p.Ala1003Val | missense_variant | 0.14 |
embB | 4249525 | c.3012T>C | synonymous_variant | 0.2 |
embB | 4249528 | c.3015C>G | synonymous_variant | 0.2 |
embB | 4249529 | p.Ile1006Val | missense_variant | 0.2 |
embB | 4249532 | p.Ala1007Thr | missense_variant | 0.2 |
embB | 4249537 | c.3024A>G | synonymous_variant | 0.2 |
embB | 4249543 | c.3030G>C | synonymous_variant | 0.21 |
embB | 4249558 | c.3045A>C | synonymous_variant | 0.18 |
embB | 4249564 | c.3051C>T | synonymous_variant | 0.19 |
embB | 4249568 | p.Ser1019Thr | missense_variant | 0.19 |
embB | 4249573 | c.3060T>C | synonymous_variant | 0.2 |
embB | 4249594 | c.3081G>C | synonymous_variant | 0.18 |
embB | 4249600 | c.3087A>G | synonymous_variant | 0.18 |