Run ID: SRR13861558
Sample name:
Date: 03-04-2023 09:34:45
Number of reads: 2937655
Percentage reads mapped: 73.52
Strain: lineage4.9
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
ethA | 4326568 | c.905delT | frameshift_variant | 1.0 | ethionamide |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 8820 | p.Asp507His | missense_variant | 1.0 |
mshA | 575967 | p.Val207Asp | missense_variant | 1.0 |
rpoB | 759961 | p.Thr52Asn | missense_variant | 1.0 |
rpoB | 763050 | p.Leu1082Met | missense_variant | 1.0 |
mmpL5 | 775701 | p.Pro927Gln | missense_variant | 1.0 |
mmpL5 | 778828 | c.-348G>A | upstream_gene_variant | 1.0 |
rplC | 801353 | p.Val182Ala | missense_variant | 1.0 |
fbiC | 1304512 | p.Val528Ile | missense_variant | 1.0 |
rrl | 1476357 | n.2700T>C | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476383 | n.2726T>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476384 | n.2727G>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476411 | n.2754G>A | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476425 | n.2768G>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476442 | n.2785T>A | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476443 | n.2786G>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476455 | n.2798C>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476456 | n.2799A>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476463 | n.2806C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.14 |
rpsA | 1834175 | p.Arg212* | stop_gained | 1.0 |
Rv1979c | 2222085 | c.1080G>C | synonymous_variant | 1.0 |
folC | 2746135 | c.1464A>C | stop_lost&splice_region_variant | 0.99 |
ald | 3087218 | p.Met133Ile | missense_variant | 1.0 |
whiB7 | 3568679 | p.Val1Leu | missense_variant | 1.0 |
clpC1 | 4040066 | c.639G>T | synonymous_variant | 1.0 |
embC | 4241259 | c.1397_1398insT | frameshift_variant | 1.0 |
embA | 4243358 | c.126C>T | synonymous_variant | 0.99 |
embA | 4243469 | c.237C>T | synonymous_variant | 1.0 |
embB | 4248436 | c.1923C>T | synonymous_variant | 1.0 |
ubiA | 4269557 | p.Ala93Pro | missense_variant | 1.0 |