Run ID: SRR14782481
Sample name:
Date: 03-04-2023 11:27:24
Number of reads: 1630564
Percentage reads mapped: 99.5
Strain: lineage4.3.4.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.3 | Euro-American (LAM) | mainly-LAM | None | 0.99 |
lineage4.3.4 | Euro-American (LAM) | LAM | RD174 | 0.99 |
lineage4.3.4.1 | Euro-American (LAM) | LAM1;LAM2 | RD174 | 0.98 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
mshA | 576113 | p.Arg256Gly | missense_variant | 0.21 |
mshA | 576616 | c.1269G>C | synonymous_variant | 0.25 |
rpoC | 763783 | c.414G>A | synonymous_variant | 0.98 |
rpoC | 764367 | p.Gly333Ala | missense_variant | 0.18 |
rpoC | 764995 | c.1626C>G | synonymous_variant | 0.98 |
rpoC | 765325 | c.1956C>T | synonymous_variant | 0.98 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 777883 | p.Gly200Arg | missense_variant | 0.21 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
fabG1 | 1673553 | p.Asp38Glu | missense_variant | 0.21 |
fabG1 | 1673558 | p.His40Pro | missense_variant | 0.12 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154388 | p.Ser575Leu | missense_variant | 1.0 |
PPE35 | 2168147 | c.2466A>G | synonymous_variant | 1.0 |
PPE35 | 2170065 | p.Ala183Gly | missense_variant | 0.31 |
Rv1979c | 2223123 | c.42G>A | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2519071 | p.Asp319Glu | missense_variant | 0.27 |
folC | 2746540 | c.1059G>A | synonymous_variant | 1.0 |
Rv2752c | 3064823 | p.Val457Leu | missense_variant | 0.16 |
thyA | 3073868 | p.Thr202Ala | missense_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 0.98 |
fbiD | 3339734 | p.Ala206Gly | missense_variant | 0.57 |
fbiD | 3339746 | p.Ala210Gly | missense_variant | 0.33 |
fbiD | 3339751 | p.Ala212Pro | missense_variant | 0.15 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
whiB7 | 3568433 | p.Arg83Gly | missense_variant | 0.2 |
Rv3236c | 3612009 | p.Ala370Thr | missense_variant | 1.0 |
rpoA | 3878597 | c.-90G>C | upstream_gene_variant | 0.5 |
rpoA | 3878641 | c.-134C>G | upstream_gene_variant | 0.88 |
clpC1 | 4038287 | c.2418C>T | synonymous_variant | 0.98 |
clpC1 | 4038951 | p.Phe585Ser | missense_variant | 0.27 |
embC | 4240409 | p.Pro183Ala | missense_variant | 0.29 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4246527 | p.Ala5Gly | missense_variant | 0.5 |
embB | 4246584 | p.Arg24Pro | missense_variant | 0.22 |
embB | 4247016 | p.Ser168Trp | missense_variant | 0.24 |
embB | 4247020 | c.507C>G | synonymous_variant | 0.18 |
embB | 4248328 | c.1815G>C | synonymous_variant | 0.39 |
whiB6 | 4338550 | c.-29A>T | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408156 | p.Leu16Arg | missense_variant | 1.0 |