Run ID: SRR15316210
Sample name:
Date: 03-04-2023 13:16:40
Number of reads: 8253057
Percentage reads mapped: 98.31
Strain: lineage4.4.2
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.4 | Euro-American | S;T | None | 0.97 |
lineage4.4.2 | Euro-American | T1;T2 | None | 0.96 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
rpoB | 761631 | p.Ala609Ser | missense_variant | 0.96 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
inhA | 1674771 | c.570C>T | synonymous_variant | 0.99 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154105 | p.Glu669Gly | missense_variant | 0.97 |
katG | 2154274 | p.Lys613Arg | missense_variant | 0.96 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2519001 | p.Glu296Ala | missense_variant | 0.97 |
Rv2752c | 3066099 | p.Met31Ile | missense_variant | 0.98 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
alr | 3840486 | p.Ile312Ser | missense_variant | 0.96 |
panD | 4044161 | p.Gly41Ser | missense_variant | 0.98 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4246508 | c.-6G>A | upstream_gene_variant | 0.98 |
embB | 4248109 | c.1596C>G | synonymous_variant | 0.98 |
aftB | 4268928 | c.-92C>T | upstream_gene_variant | 0.98 |
aftB | 4269375 | c.-539G>A | upstream_gene_variant | 0.98 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |