Run ID: SRR15368948
Sample name:
Date: 03-04-2023 14:01:40
Number of reads: 8001082
Percentage reads mapped: 99.22
Strain: lineage4.5;lineage4.4.2
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.5 | Euro-American | H;T | RD122 | 0.19 |
lineage4.4 | Euro-American | S;T | None | 0.79 |
lineage4.4.2 | Euro-American | T1;T2 | None | 0.8 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 7892 | c.591G>A | synonymous_variant | 0.21 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
mshA | 576690 | p.Tyr448Cys | missense_variant | 0.22 |
ccsA | 620029 | c.139C>T | synonymous_variant | 0.25 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rpsA | 1834803 | p.Ala421Val | missense_variant | 0.2 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2168757 | p.Gln619Arg | missense_variant | 0.81 |
PPE35 | 2170568 | p.Ile15Met | missense_variant | 0.2 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
eis | 2714211 | c.1122G>A | synonymous_variant | 0.14 |
Rv2752c | 3066099 | p.Met31Ile | missense_variant | 0.82 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 0.79 |
Rv3083 | 3448348 | c.-156G>A | upstream_gene_variant | 0.83 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
rpoA | 3878575 | c.-68C>T | upstream_gene_variant | 0.21 |
clpC1 | 4038318 | p.Pro796Leu | missense_variant | 0.19 |
embA | 4242397 | c.-836G>A | upstream_gene_variant | 0.22 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4246508 | c.-6G>A | upstream_gene_variant | 0.78 |
embB | 4247249 | p.Gly246Arg | missense_variant | 0.79 |
aftB | 4268928 | c.-92C>T | upstream_gene_variant | 0.78 |
aftB | 4269375 | c.-539G>A | upstream_gene_variant | 0.82 |
ethA | 4326009 | p.Val489Phe | missense_variant | 0.21 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408090 | p.Pro38Arg | missense_variant | 0.8 |