Run ID: SRR16058505
Sample name:
Date: 03-04-2023 15:52:21
Number of reads: 110211
Percentage reads mapped: 99.0
Strain: lineage4.6
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.6 | Euro-American | T;LAM | None | 0.06 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7539 | p.Thr80Ala | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
rpoC | 765044 | p.Met559Leu | missense_variant | 0.4 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rplC | 800793 | c.-16G>A | upstream_gene_variant | 0.4 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472816 | n.971A>C | non_coding_transcript_exon_variant | 0.29 |
PPE35 | 2169854 | c.759T>G | synonymous_variant | 0.33 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
ald | 3087673 | p.His285Pro | missense_variant | 0.4 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fbiB | 3642693 | p.Ala387Ser | missense_variant | 1.0 |
alr | 3841506 | c.-86A>C | upstream_gene_variant | 0.5 |
aftB | 4267068 | p.Asn590Thr | missense_variant | 0.5 |
ethA | 4328329 | c.-856C>G | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |