Run ID: SRR1735639
Sample name:
Date: 12-08-2022 13:51:44
Number of reads: 2583442
Percentage reads mapped: 98.67
Strain: lineage4.5
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.5 | Euro-American | H;T | RD122 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 7892 | c.591G>A | synonymous_variant | 1.0 |
gyrA | 7895 | c.594C>T | synonymous_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
ccsA | 620029 | c.139C>T | synonymous_variant | 1.0 |
rpoB | 762475 | p.Gly890Asp | missense_variant | 0.99 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
Rv1258c | 1406101 | p.Pro414Ser | missense_variant | 1.0 |
Rv1258c | 1407395 | c.-64_-56delTGCGGCAGC | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472670 | n.825G>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472675 | n.830T>C | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472677 | n.832C>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472681 | n.837_838delTT | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472690 | n.845C>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1473413 | n.-245G>T | upstream_gene_variant | 0.2 |
rrl | 1476338 | n.2681C>T | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.09 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2170568 | p.Ile15Met | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
ddn | 3986902 | p.Trp20* | stop_gained | 1.0 |
clpC1 | 4038318 | p.Pro796Leu | missense_variant | 0.99 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4244318 | c.1086C>T | synonymous_variant | 0.98 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |