Run ID: SRR2101429
Sample name:
Date: 03-04-2023 23:42:41
Number of reads: 547309
Percentage reads mapped: 99.78
Strain: lineage4.3.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.3 | Euro-American (LAM) | mainly-LAM | None | 1.0 |
lineage4.3.2 | Euro-American (LAM) | LAM3 | None | 1.0 |
lineage4.3.2.1 | Euro-American (LAM) | LAM3 | RD761 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5520 | p.Pro94Leu | missense_variant | 1.0 |
gyrA | 7222 | c.-80C>T | upstream_gene_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
mshA | 576134 | p.Val263Phe | missense_variant | 0.14 |
mshA | 576298 | p.Asp317Glu | missense_variant | 0.13 |
ccsA | 620748 | c.858T>G | synonymous_variant | 0.21 |
rpoC | 764995 | c.1626C>G | synonymous_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1303055 | p.Asp42Gly | missense_variant | 0.1 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472337 | n.492C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1473693 | n.36G>A | non_coding_transcript_exon_variant | 0.11 |
rrl | 1474378 | n.721G>A | non_coding_transcript_exon_variant | 0.29 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2168100 | c.2512delC | frameshift_variant | 0.15 |
PPE35 | 2170013 | c.600C>A | synonymous_variant | 0.25 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.33 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.33 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289793 | c.-552C>T | upstream_gene_variant | 0.12 |
kasA | 2518147 | c.33C>T | synonymous_variant | 0.3 |
kasA | 2518593 | p.Ala160Asp | missense_variant | 0.15 |
kasA | 2519057 | p.Thr315Ser | missense_variant | 0.11 |
kasA | 2519062 | c.948T>G | synonymous_variant | 0.11 |
kasA | 2519065 | c.951C>A | synonymous_variant | 0.11 |
kasA | 2519070 | p.Asp319Val | missense_variant | 0.11 |
Rv2752c | 3066318 | c.-127C>G | upstream_gene_variant | 0.11 |
thyX | 3067973 | c.-28A>G | upstream_gene_variant | 0.12 |
thyA | 3073868 | p.Thr202Ala | missense_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612161 | p.Ala319Glu | missense_variant | 0.11 |
fbiB | 3642684 | c.1150T>C | synonymous_variant | 0.11 |
clpC1 | 4038287 | c.2418C>T | synonymous_variant | 1.0 |
panD | 4044075 | c.207T>A | synonymous_variant | 0.14 |
embC | 4240648 | c.786C>T | synonymous_variant | 0.21 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4244036 | c.804C>A | synonymous_variant | 0.12 |
embA | 4244464 | p.Ala411Asp | missense_variant | 0.5 |
embB | 4246920 | p.Pro136Leu | missense_variant | 0.18 |
embB | 4248857 | p.Gly782* | stop_gained | 0.11 |
embB | 4249528 | c.3015C>T | synonymous_variant | 0.1 |
ethA | 4327213 | p.Ser87Arg | missense_variant | 0.11 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408156 | p.Leu16Arg | missense_variant | 1.0 |