Run ID: SRR21700850
Sample name:
Date: 14-03-2024 21:11:50
Number of reads: 7091601
Percentage reads mapped: 99.98
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|---|---|
Rifampicin | ||
Isoniazid | ||
Ethambutol | ||
Pyrazinamide | ||
Streptomycin | ||
Fluoroquinolones | ||
Moxifloxacin | ||
Ofloxacin | ||
Levofloxacin | ||
Ciprofloxacin | ||
Aminoglycosides | ||
Amikacin | ||
Capreomycin | ||
Kanamycin | ||
Cycloserine | ||
Ethionamide | ||
Clofazimine | ||
Para-aminosalicylic_acid | ||
Delamanid | ||
Bedaquiline | ||
Linezolid |
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
mshA | 576179 | p.Lys278Gln | missense_variant | 1.0 |
Rv1258c | 1406686 | p.Val219Ile | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rpoA | 3878619 | c.-112A>C | upstream_gene_variant | 0.12 |
embB | 4247028 | p.Leu172Arg | missense_variant | 0.13 |
embB | 4247039 | p.Phe176Val | missense_variant | 0.11 |
ethA | 4326842 | p.Tyr211Cys | missense_variant | 0.99 |