Run ID: SRR21700948
Sample name:
Date: 12-03-2024 18:00:04
Number of reads: 5215202
Percentage reads mapped: 99.98
Strain: lineage4.9
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|---|---|
Rifampicin | ||
Isoniazid | ||
Ethambutol | ||
Pyrazinamide | ||
Streptomycin | ||
Fluoroquinolones | R | gyrB p.Asp461Asn (1.00), gyrB p.Ala504Thr (1.00) |
Moxifloxacin | R | gyrB p.Asp461Asn (1.00), gyrB p.Ala504Thr (1.00) |
Ofloxacin | R | gyrB p.Asp461Asn (1.00), gyrB p.Ala504Thr (1.00) |
Levofloxacin | R | gyrB p.Asp461Asn (1.00), gyrB p.Ala504Thr (1.00) |
Ciprofloxacin | R | gyrB p.Asp461Asn (1.00), gyrB p.Ala504Thr (1.00) |
Aminoglycosides | ||
Amikacin | ||
Capreomycin | ||
Kanamycin | ||
Cycloserine | ||
Ethionamide | ||
Clofazimine | ||
Para-aminosalicylic_acid | ||
Delamanid | ||
Bedaquiline | ||
Linezolid |
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
gyrB | 6620 | p.Asp461Asn | missense_variant | 1.0 | ofloxacin, moxifloxacin, levofloxacin, fluoroquinolones, ciprofloxacin |
gyrB | 6749 | p.Ala504Thr | missense_variant | 1.0 | ofloxacin, moxifloxacin, levofloxacin, fluoroquinolones, ciprofloxacin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
Rv1258c | 1406686 | p.Val219Ile | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |