TB-Profiler result

Run: SRR22048552
Summary

Run ID: SRR22048552

Sample name:

Date: 04-04-2023 03:56:46

Number of reads: 8685730

Percentage reads mapped: 99.49

Strain: lineage4.8

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.8 Euro-American (mainly T) T1;T2;T3;T5 RD219 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
mshA 575891 p.Ala182Thr missense_variant 0.61
mmpL5 775591 p.Val964Leu missense_variant 0.64
mmpL5 775639 p.Ile948Val missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrl 1474001 n.344C>T non_coding_transcript_exon_variant 1.0
rrl 1474017 n.360A>G non_coding_transcript_exon_variant 0.68
tlyA 1917972 c.33A>G synonymous_variant 1.0
katG 2155480 p.Ser211Asn missense_variant 0.66
PPE35 2168076 p.Thr846Met missense_variant 0.42
PPE35 2168149 p.Pro822Ser missense_variant 0.36
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
Rv3083 3448497 c.-7T>A upstream_gene_variant 1.0
Rv3083 3448500 c.-4A>G upstream_gene_variant 1.0
Rv3083 3448501 c.-3G>T upstream_gene_variant 1.0
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4242928 c.-305A>G upstream_gene_variant 0.66
embB 4247595 p.Cys361Ser missense_variant 0.58
aftB 4268040 p.Leu266Pro missense_variant 0.6
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4408457 c.-255A>C upstream_gene_variant 0.62
Rv3083 3448507 c.5_*1408del frameshift_variant&stop_lost&splice_region_variant 1.0