Run ID: SRR23861939
Sample name:
Date: 12-04-2023 11:17:41
Number of reads: 4405117
Percentage reads mapped: 99.74
Strain: lineage4.3.3
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|---|---|
Rifampicin | ||
Isoniazid | ||
Ethambutol | ||
Pyrazinamide | ||
Streptomycin | ||
Fluoroquinolones | ||
Moxifloxacin | ||
Ofloxacin | ||
Levofloxacin | ||
Ciprofloxacin | ||
Aminoglycosides | ||
Amikacin | ||
Capreomycin | ||
Kanamycin | ||
Cycloserine | ||
Ethionamide | ||
Clofazimine | ||
Para-aminosalicylic_acid | ||
Delamanid | ||
Bedaquiline | ||
Linezolid |
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.3 | Euro-American (LAM) | mainly-LAM | None | 1.0 |
lineage4.3.3 | Euro-American (LAM) | LAM;T | RD115 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 7058 | p.Ile607Val | missense_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 0.99 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 0.99 |
gyrA | 8040 | p.Gly247Ser | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
mshA | 576093 | p.Pro249Arg | missense_variant | 0.21 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.17 |
rpoC | 764995 | c.1626C>G | synonymous_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1303095 | c.165G>A | synonymous_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1475753 | n.2096C>G | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475754 | n.2097G>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475762 | n.2105G>C | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475774 | n.2117C>G | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475778 | n.2121G>T | non_coding_transcript_exon_variant | 0.21 |
rpsA | 1834836 | p.Met432Thr | missense_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2156196 | c.-85C>T | upstream_gene_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518919 | p.Gly269Ser | missense_variant | 1.0 |
folC | 2746340 | p.Ala420Val | missense_variant | 1.0 |
thyA | 3073868 | p.Thr202Ala | missense_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
whiB7 | 3568428 | c.252A>C | synonymous_variant | 0.12 |
whiB7 | 3568431 | c.249C>G | synonymous_variant | 0.18 |
clpC1 | 4038287 | c.2418C>T | synonymous_variant | 1.0 |
clpC1 | 4038968 | c.1737G>A | synonymous_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4246542 | p.Ser10Thr | missense_variant | 0.23 |
embB | 4246552 | p.Asn13Lys | missense_variant | 0.31 |
embB | 4246559 | p.Ile16Leu | missense_variant | 0.12 |
embB | 4246569 | p.Ala19Gly | missense_variant | 0.18 |
embB | 4246574 | p.Ala21Ser | missense_variant | 0.32 |
embB | 4246613 | p.Gly34Arg | missense_variant | 0.16 |
embB | 4246993 | p.Asn160Lys | missense_variant | 0.14 |
embB | 4247013 | p.Pro167Arg | missense_variant | 0.19 |
embB | 4247016 | p.Ser168Trp | missense_variant | 0.15 |
embB | 4247028 | p.Leu172Arg | missense_variant | 0.2 |
aftB | 4268566 | p.Ser91Ala | missense_variant | 1.0 |
ethA | 4328025 | c.-552T>A | upstream_gene_variant | 0.15 |
ethR | 4328030 | p.Ala161Gly | missense_variant | 0.2 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408156 | p.Leu16Arg | missense_variant | 1.0 |