Run ID: SRR24466757
Sample name:
Date: 23-01-2024 07:10:46
Number of reads: 3134613
Percentage reads mapped: 99.56
Strain: lineage4
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|---|---|
Rifampicin | ||
Isoniazid | ||
Ethambutol | ||
Pyrazinamide | ||
Streptomycin | ||
Fluoroquinolones | ||
Moxifloxacin | ||
Ofloxacin | ||
Levofloxacin | ||
Ciprofloxacin | ||
Aminoglycosides | ||
Amikacin | ||
Capreomycin | ||
Kanamycin | ||
Cycloserine | ||
Ethionamide | ||
Clofazimine | ||
Para-aminosalicylic_acid | ||
Delamanid | ||
Bedaquiline | ||
Linezolid |
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 6463 | c.-839C>T | upstream_gene_variant | 0.98 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
fgd1 | 491591 | p.Lys270Met | missense_variant | 0.16 |
mshA | 576651 | p.Asp435Ala | missense_variant | 0.18 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 0.14 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154980 | c.1132C>T | synonymous_variant | 0.88 |
PPE35 | 2170811 | c.-199C>T | upstream_gene_variant | 0.92 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
eis | 2715352 | c.-20A>C | upstream_gene_variant | 0.94 |
thyX | 3067976 | c.-31T>C | upstream_gene_variant | 0.88 |
Rv3083 | 3448385 | c.-119C>G | upstream_gene_variant | 0.94 |
Rv3236c | 3612290 | p.Leu276Arg | missense_variant | 0.94 |
fbiB | 3642615 | p.Pro361Ala | missense_variant | 0.9 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
aftB | 4268076 | p.Met254Ala | missense_variant | 0.94 |
ethR | 4326919 | c.-630T>C | upstream_gene_variant | 0.92 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 0.99 |
gid | 4407938 | p.Val89Leu | missense_variant | 0.93 |