lineage | Count |
---|---|
lineage4.3.4.2.1 | 6 |
La1.2.BCG | 4 |
lineage1.2.1.2.1 | 20 |
lineage2.2.1.1 | 8 |
lineage2.2.1 | 64 |
lineage4.3.3 | 10 |
lineage1.1.2 | 20 |
lineage1.2.1.2 | 3 |
lineage2.1 | 1 |
lineage1.1.1.1 | 7 |
lineage4.8 | 19 |
lineage4.2.1.1 | 2 |
lineage3 | 30 |
lineage1.1.3.1 | 4 |
lineage3.1.2.1 | 3 |
lineage4.1.2 | 5 |
lineage3.1 | 2 |
lineage4.4.1.1 | 2 |
lineage4.1.1.3 | 1 |
lineage4.9 | 4 |
lineage6.1.1 | 1 |
lineage4.5 | 7 |
lineage1.2.2.2 | 6 |
lineage4.2.2 | 3 |
lineage1.1.3 | 1 |
lineage4.4.2 | 4 |
lineage4.3.4.1 | 1 |
lineage4.1.2.1 | 13 |
lineage4.6.3 | 1 |
lineage4.3.4.2 | 2 |
lineage2.2.1;lineage4.5 | 1 |
lineage1.1.3.3 | 1 |
lineage3.1.2 | 1 |
lineage4.1.2.1;lineage4.8 | 1 |
lineage1.1.1 | 3 |
lineage4.3.1 | 1 |
lineage2.2.2 | 3 |
lineage4 | 2 |
lineage4.2.2.1 | 1 |
lineage2.2.1;lineage4.2.2.2 | 1 |
lineage4.3.2 | 4 |
lineage1.2.2.2;lineage2.2.1 | 1 |
lineage3.1.1 | 1 |
La3 | 1 |
lineage1.1.2;lineage2.2.1.1 | 1 |
lineage4.1.1 | 1 |
spoligotype | Count |
---|---|
None | 278 |
ID | Drug resistance | Lineage | Country iso2 | SRR27450113 | Sensitive | lineage4.3.4.2.1 | None | SRR27450425 | Other | La1.2.BCG | None | SRR21733190 | Sensitive | lineage1.2.1.2.1 | None | SRR27450407 | RR-TB | lineage2.2.1.1 | None | SRR24710064 | MDR-TB | lineage2.2.1 | None | SRR27450395 | Sensitive | lineage4.3.3 | None | SRR27450536 | Sensitive | lineage1.1.2 | None | SRR27450012 | Sensitive | lineage1.2.1.2 | None | SRR21733360 | Sensitive | lineage1.1.2 | None | SRR26111989 | Sensitive | lineage2.2.1 | None | SRR26558642 | HR-TB | lineage2.1 | None | SRR27450142 | Sensitive | lineage1.2.1.2.1 | None | SRR27450003 | Sensitive | lineage1.1.1.1 | None | SRR23861888 | Sensitive | lineage4.8 | None | SRR27449982 | Sensitive | lineage4.2.1.1 | None | SRR26558626 | Other | lineage2.2.1 | None | SRR27450568 | Sensitive | lineage3 | None | SRR16088106 | MDR-TB | lineage4.3.3 | None | SRR27450527 | Sensitive | lineage1.1.3.1 | None | SRR25827467 | Sensitive | lineage3.1.2.1 | None | SRR21732586 | Sensitive | lineage4.1.2 | None | SRR27450397 | Other | La1.2.BCG | None | SRR27449963 | Sensitive | lineage3 | None | SRR21732956 | Sensitive | lineage3.1 | None | SRR28860046 | Sensitive | lineage1.2.1.2.1 | None | SRR28339303 | Pre-XDR-TB | lineage2.2.1 | None | SRR27450370 | Other | La1.2.BCG | None | SRR16088209 | MDR-TB | lineage2.2.1 | None | SRR26112557 | Sensitive | lineage4.4.1.1 | None | SRR26112586 | Other | lineage2.2.1 | None | SRR21732591 | Sensitive | lineage4.3.3 | None | SRR26112407 | Sensitive | lineage4.3.3 | None | SRR26112603 | Sensitive | lineage4.1.1.3 | None | DRR473885 | Sensitive | lineage2.2.1 | None | SRR27450017 | Sensitive | lineage1.1.2 | None | SRR26112437 | Sensitive | lineage4.9 | None | SRR21733273 | Sensitive | lineage6.1.1 | None | SRR21733364 | Sensitive | lineage4.5 | None | SRR21732145 | Sensitive | lineage4.1.2 | None | SRR27450584 | Sensitive | lineage4.8 | None | SRR27450543 | Sensitive | lineage4.3.4.2.1 | None | SRR27450286 | Sensitive | lineage2.2.1 | None | SRR25827681 | Other | lineage3 | None | SRR27450605 | Other | La1.2.BCG | None | SRR25827564 | Sensitive | lineage3 | None | SRR21732833 | Sensitive | lineage3 | None | SRR16088538 | Sensitive | lineage4.8 | None | SRR21733262 | Sensitive | lineage1.2.2.2 | None | SRR27450335 | Sensitive | lineage2.2.1 | None | SRR21733134 | Sensitive | lineage2.2.1 | None | SRR21733121 | Sensitive | lineage4.2.2 | None | SRR27449980 | Sensitive | lineage2.2.1 | None | SRR26112368 | Sensitive | lineage1.1.3 | None | SRR27450283 | Sensitive | lineage3 | None | SRR27450015 | Sensitive | lineage2.2.1 | None | SRR27450209 | Sensitive | lineage4.4.2 | None | SRR21733270 | Other | lineage2.2.1 | None | SRR27450001 | Sensitive | lineage1.2.1.2.1 | None | SRR21732962 | Other | lineage3 | None | SRR26112447 | Sensitive | lineage4.3.4.1 | None | SRR21733356 | Sensitive | lineage4.3.4.2.1 | None | SRR21732798 | Sensitive | lineage1.2.1.2.1 | None | SRR21733353 | Sensitive | lineage2.2.1 | None | SRR27450314 | Other | lineage3 | None | SRR26112732 | Sensitive | lineage4.1.2.1 | None | SRR16088123 | Pre-XDR-TB | lineage2.2.1 | None | SRR27450436 | Other | lineage4.8 | None | SRR26112369 | Other | lineage2.2.1 | None | SRR24710081 | Pre-XDR-TB | lineage2.2.1 | None | SRR21733271 | Sensitive | lineage4.5 | None | SRR21732848 | Sensitive | lineage1.1.2 | None | SRR27450156 | Sensitive | lineage2.2.1.1 | None | SRR26111944 | MDR-TB | lineage2.2.1 | None | SRR27450299 | Other | lineage2.2.1 | None | DRR473853 | Other | lineage2.2.1 | None | SRR21732373 | Sensitive | lineage4.1.2.1 | None | SRR26558633 | Other | lineage3 | None | SRR27450532 | HR-TB | lineage2.2.1 | None | SRR27450140 | Sensitive | lineage1.1.2 | None | SRR16088579 | MDR-TB | lineage2.2.1 | None | SRR26112581 | Sensitive | lineage1.1.3.1 | None | SRR27450400 | Sensitive | lineage4.6.3 | None | SRR16087896 | Pre-XDR-TB | lineage2.2.1 | None | SRR21733345 | Sensitive | lineage1.2.1.2.1 | None | SRR21732808 | Sensitive | lineage3 | None | SRR16088192 | Sensitive | lineage4.1.2.1 | None | SRR26112216 | Sensitive | lineage4.1.2.1 | None | SRR27450341 | Pre-XDR-TB | lineage2.2.1 | None | SRR26112411 | Sensitive | lineage4.3.4.2 | None | SRR27450560 | Sensitive | lineage1.1.2 | None | SRR27450167 | Other | lineage1.2.2.2 | None | SRR25827769 | Pre-XDR-TB | lineage2.2.1;lineage4.5 | None | SRR27450016 | Sensitive | lineage1.1.2 | None | SRR27450332 | Sensitive | lineage2.2.1 | None | SRR27450357 | Sensitive | lineage3 | None | SRR27450343 | Sensitive | lineage2.2.1 | None | SRR27450330 | Sensitive | lineage2.2.1 | None | SRR16088026 | Sensitive | lineage4.8 | None | SRR26112353 | Sensitive | lineage2.2.1 | None | SRR21733192 | Sensitive | lineage1.1.2 | None | SRR27450389 | Sensitive | lineage1.1.3.3 | None | SRR24710140 | Pre-XDR-TB | lineage2.2.1 | None | SRR26558622 | HR-TB | lineage4.4.2 | None | SRR26112559 | Sensitive | lineage2.2.1 | None | SRR21733354 | Sensitive | lineage1.2.1.2.1 | None | SRR21733207 | Sensitive | lineage4.5 | None | SRR27450143 | Sensitive | lineage3 | None | SRR26112357 | Other | lineage2.2.1.1 | None | SRR16088023 | Sensitive | lineage4.3.3 | None | SRR27450415 | Sensitive | lineage4.2.2 | None | SRR27450546 | Sensitive | lineage1.1.2 | None | SRR27450430 | Sensitive | lineage3.1.2 | None | SRR21733155 | Sensitive | lineage4.8 | None | SRR21732996 | Other | lineage2.2.1 | None | SRR27450334 | Sensitive | lineage2.2.1 | None | SRR27450405 | Sensitive | lineage3 | None | SRR21732953 | Sensitive | lineage2.2.1 | None | DRR473928 | Other | lineage2.2.1 | None | SRR27450590 | Sensitive | lineage4.5 | None | SRR21733361 | Sensitive | lineage3 | None | SRR16088108 | Sensitive | lineage4.1.2.1;lineage4.8 | None | SRR27450300 | Sensitive | lineage4.1.2 | None | SRR24799213 | Other | lineage2.2.1.1 | None | SRR27450298 | Sensitive | lineage3.1 | None | SRR27449995 | Sensitive | lineage1.2.1.2.1 | None | SRR27450423 | Other | lineage3.1.2.1 | None | SRR21733266 | HR-TB | lineage1.1.1 | None | SRR27450508 | Sensitive | lineage1.2.1.2.1 | None | SRR21732949 | Sensitive | lineage1.1.2 | None | SRR27449997 | Sensitive | lineage1.1.1 | None | SRR27450409 | Sensitive | lineage2.2.1 | None | SRR27450434 | Sensitive | lineage4.1.2.1 | None | SRR27449961 | Sensitive | lineage4.3.3 | None | SRR21732924 | Sensitive | lineage2.2.1.1 | None | SRR27450524 | Sensitive | lineage4.3.1 | None | SRR21732812 | Sensitive | lineage2.2.2 | None | SRR24799192 | Sensitive | lineage4.8 | None | SRR21732955 | MDR-TB | lineage1.1.2 | None | SRR26112543 | Sensitive | lineage1.1.1.1 | None | SRR26111954 | Sensitive | lineage4.5 | None | SRR21733127 | Sensitive | lineage3 | None | DRR473901 | Sensitive | lineage2.2.1 | None | SRR27450509 | Sensitive | lineage3 | None | SRR27450503 | Sensitive | lineage1.2.1.2.1 | None | SRR27450105 | Sensitive | lineage4.3.4.2.1 | None | SRR21732809 | Sensitive | lineage4 | None | SRR21733359 | Sensitive | lineage4.2.2.1 | None | SRR26112361 | Sensitive | lineage4.3.3 | None | SRR21732965 | Sensitive | lineage1.2.1.2.1 | None | SRR21733265 | Sensitive | lineage2.2.1.1 | None | SRR21733204 | Sensitive | lineage1.1.2 | None | SRR26112350 | Sensitive | lineage1.2.1.2.1 | None | SRR26111940 | Sensitive | lineage3 | None | SRR24255946 | MDR-TB | lineage4.2.1.1 | None | SRR27450342 | Sensitive | lineage1.2.1.2.1 | None | SRR25827562 | XDR-TB | lineage2.2.1;lineage4.2.2.2 | None | SRR27450186 | Sensitive | lineage4.1.2.1 | None | SRR27449981 | Sensitive | lineage3 | None | SRR24710067 | MDR-TB | lineage2.2.1 | None | SRR26112352 | Sensitive | lineage2.2.1.1 | None | SRR21732819 | Pre-XDR-TB | lineage2.2.1 | None | SRR26112229 | Sensitive | lineage3.1.2.1 | None | SRR24710252 | Pre-XDR-TB | lineage2.2.1 | None | SRR16088016 | Sensitive | lineage2.2.1 | None | SRR27450331 | HR-TB | lineage1.2.1.2.1 | None | SRR27450303 | Sensitive | lineage3 | None | SRR24799197 | Sensitive | lineage4.3.2 | None | SRR21733347 | Sensitive | lineage1.1.1.1 | None | SRR27450146 | Sensitive | lineage4.9 | None | SRR27450591 | Sensitive | lineage2.2.1 | None | SRR27450551 | Sensitive | lineage4.8 | None | SRR21732376 | Sensitive | lineage1.2.2.2 | None | SRR24256022 | Sensitive | lineage4.1.2 | None | SRR24710078 | Sensitive | lineage4.8 | None | SRR27450008 | Sensitive | lineage1.2.1.2.1 | None | SRR26112019 | Sensitive | lineage2.2.1 | None | SRR27449991 | Sensitive | lineage4.1.2 | None | SRR27450589 | Sensitive | lineage1.1.3.1 | None | SRR25827646 | Pre-XDR-TB | lineage1.2.2.2;lineage2.2.1 | None | DRR473814 | Sensitive | lineage2.2.1 | None | SRR26558624 | Pre-XDR-TB | lineage3 | None | SRR16088119 | Sensitive | lineage4.8 | None | SRR26112009 | HR-TB | lineage4.8 | None | SRR27450592 | Sensitive | lineage3 | None | SRR27450346 | Sensitive | lineage2.2.1 | None | SRR21732800 | Sensitive | lineage4.1.2.1 | None | SRR27450422 | Sensitive | lineage1.2.1.2 | None | SRR27450534 | Sensitive | lineage4.3.4.2.1 | None | SRR26112434 | Sensitive | lineage4.8 | None | SRR26112025 | Sensitive | lineage4.3.2 | None | SRR24466757 | Sensitive | lineage4 | None | SRR27450593 | Sensitive | lineage4.3.2 | None | SRR25827660 | Sensitive | lineage3 | None | SRR26112439 | Sensitive | lineage1.2.2.2 | None | SRR27450372 | HR-TB | lineage4.2.2 | None | SRR27450104 | Sensitive | lineage4.3.4.2.1 | None | SRR27450184 | Sensitive | lineage3.1.1 | None | SRR27450188 | Other | La3 | None | SRR21733138 | Sensitive | lineage1.1.2 | None | SRR26112413 | Sensitive | lineage2.2.1 | None | SRR27450192 | Sensitive | lineage4.9 | None | SRR21733233 | Other | lineage1.2.2.2 | None | SRR21732815 | Sensitive | lineage1.1.2 | None | SRR26558623 | HR-TB | lineage1.1.1.1 | None | SRR28434986 | Pre-XDR-TB | lineage2.2.1 | None | SRR28385877 | MDR-TB | lineage2.2.2 | None | SRR28859668 | Sensitive | lineage4.3.2 | None | SRR28859711 | Sensitive | lineage2.2.1 | None | SRR28859719 | Sensitive | lineage4.1.2.1 | None | SRR28859646 | Sensitive | lineage2.2.1 | None | SRR16088104 | HR-TB | lineage4.8 | None | SRR27450367 | Sensitive | lineage1.2.1.2.1 | None | SRR27450577 | Sensitive | lineage4.5 | None | SRR26112777 | Sensitive | lineage2.2.1 | None | SRR24466765 | Sensitive | lineage4.8 | None | SRR21732116 | Sensitive | lineage2.2.1.1 | None | SRR24256130 | Pre-XDR-TB | lineage2.2.1 | None | SRR21733268 | Other | lineage3 | None | DRR473857 | Sensitive | lineage2.2.1 | None | SRR21733185 | Sensitive | lineage1.2.1.2.1 | None | SRR27450427 | Sensitive | lineage1.1.2 | None | SRR27450210 | Sensitive | lineage3 | None | SRR21732838 | HR-TB | lineage1.2.1.2.1 | None | SRR27450013 | Sensitive | lineage1.1.2 | None | SRR21732879 | Sensitive | lineage2.2.1 | None | SRR16088537 | Other | lineage4.8 | None | SRR21732802 | Sensitive | lineage2.2.1 | None | SRR27450361 | Sensitive | lineage1.2.2.2 | None | SRR27450106 | MDR-TB | lineage3 | None | SRR27450320 | Sensitive | lineage1.1.1.1 | None | SRR16088414 | MDR-TB | lineage2.2.1 | None | SRR25827483 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827862 | Pre-XDR-TB | lineage1.1.2;lineage2.2.1.1 | None | SRR16088195 | MDR-TB | lineage2.2.1 | None | SRR21732814 | Sensitive | lineage4.4.2 | None | SRR27450141 | Other | lineage2.2.1 | None | SRR27450398 | Sensitive | lineage4.1.2.1 | None | SRR24256079 | MDR-TB | lineage2.2.1 | None | SRR27450019 | Sensitive | lineage3 | None | SRR27450030 | Sensitive | lineage4.8 | None | DRR473820 | Sensitive | lineage4.8 | None | SRR26112387 | Sensitive | lineage2.2.2 | None | SRR24255964 | Pre-XDR-TB | lineage4.3.3 | None | SRR27450349 | Other | lineage1.2.1.2.1 | None | SRR27450428 | Sensitive | lineage4.5 | None | SRR24256249 | MDR-TB | lineage2.2.1 | None | SRR27450020 | Sensitive | lineage3 | None | SRR27450406 | Sensitive | lineage4.4.2 | None | SRR27450009 | Sensitive | lineage4.8 | None | SRR27450296 | Sensitive | lineage1.1.2 | None | SRR21733206 | Sensitive | lineage1.1.3.1 | None | SRR27450302 | Sensitive | lineage1.1.2 | None | SRR27450419 | Sensitive | lineage3 | None | SRR27450353 | Sensitive | lineage1.2.1.2.1 | None | SRR27450424 | Sensitive | lineage1.2.1.2 | None | SRR24710088 | MDR-TB | lineage2.2.1 | None | SRR25827319 | Sensitive | lineage3 | None | SRR27450098 | Sensitive | lineage4.3.3 | None | SRR26111938 | HR-TB | lineage4.1.2.1 | None | SRR26112560 | Sensitive | lineage4.1.1 | None | SRR21733115 | Sensitive | lineage4.1.2.1 | None | DRR473948 | Sensitive | lineage2.2.1 | None | SRR27450586 | Sensitive | lineage1.1.2 | None | SRR21733263 | HR-TB | lineage2.2.1 | None | SRR16088038 | Other | lineage4.8 | None | SRR27450337 | Sensitive | lineage4.3.4.2 | None | SRR27450047 | Sensitive | lineage2.2.1 | None | SRR16088584 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR27450044 | Sensitive | lineage4.9 | None | SRR26112370 | Sensitive | lineage4.1.2.1 | None | SRR27450547 | Sensitive | lineage2.2.1 | None | SRR21733339 | Sensitive | lineage1.1.1 | None | SRR26397813 | Pre-XDR-TB | lineage4.4.1.1 | None | SRR26112551 | Sensitive | lineage3 | None | SRR26112016 | Other | lineage1.1.2 | None | SRR27450145 | Sensitive | lineage1.1.1.1 | None | SRR27450580 | Other | lineage1.1.1.1 | None | SRR27450099 | Sensitive | lineage4.3.3 | None |
---|