Run ID: SRR2502810
Sample name:
Date: 04-04-2023 04:47:31
Number of reads: 2004735
Percentage reads mapped: 99.75
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 7017 | p.Ala593Val | missense_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
rpoC | 766085 | p.Pro906Ala | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
atpE | 1460992 | c.-53A>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2169041 | c.1572G>A | synonymous_variant | 0.5 |
PPE35 | 2169044 | c.1569G>C | synonymous_variant | 0.21 |
PPE35 | 2169047 | c.1566C>T | synonymous_variant | 0.15 |
PPE35 | 2169053 | c.1560T>C | synonymous_variant | 0.92 |
PPE35 | 2169056 | c.1557A>G | synonymous_variant | 0.15 |
PPE35 | 2169059 | c.1554G>A | synonymous_variant | 0.77 |
PPE35 | 2169063 | p.Met517Thr | missense_variant | 0.92 |
PPE35 | 2169065 | p.Ala516Ile | missense_variant | 0.77 |
PPE35 | 2169068 | c.1545G>T | synonymous_variant | 0.77 |
PPE35 | 2169071 | c.1542A>G | synonymous_variant | 0.12 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518051 | c.-64A>G | upstream_gene_variant | 1.0 |
Rv3083 | 3448497 | c.-7T>A | upstream_gene_variant | 1.0 |
whiB7 | 3568503 | c.177G>T | synonymous_variant | 1.0 |
alr | 3840764 | c.657G>C | synonymous_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 0.99 |
embB | 4247151 | p.Arg213Gln | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
Rv3083 | 3448500 | c.-3_*1408del | transcript_ablation | 1.0 |