Run ID: SRR4033795
Sample name:
Date: 04-04-2023 06:20:32
Number of reads: 643762
Percentage reads mapped: 99.51
Strain: lineage2.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage2 | East-Asian | Beijing | RD105 | 1.0 |
lineage2.2 | East-Asian (Beijing) | Beijing-RD207 | RD105;RD207 | 1.0 |
lineage2.2.1 | East-Asian (Beijing) | Beijing-RD181 | RD105;RD207;RD181 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6143 | p.His302Tyr | missense_variant | 0.15 |
gyrB | 6767 | p.Gly510Cys | missense_variant | 0.11 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 7666 | c.368delC | frameshift_variant | 0.2 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 490923 | p.Gln47His | missense_variant | 0.14 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
ccsA | 620625 | p.Ile245Met | missense_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoB | 763055 | p.Leu1083Phe | missense_variant | 0.17 |
rpoC | 764845 | c.1476C>T | synonymous_variant | 0.2 |
rpoC | 765881 | p.Ser838Thr | missense_variant | 0.5 |
rpoC | 767272 | c.3903C>T | synonymous_variant | 0.18 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 775697 | c.2784G>A | synonymous_variant | 0.22 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 776182 | p.Asp767Asn | missense_variant | 1.0 |
mmpL5 | 777200 | c.1281C>A | synonymous_variant | 0.22 |
mmpS5 | 779615 | c.-710C>G | upstream_gene_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1303245 | c.315C>T | synonymous_variant | 0.22 |
Rv1258c | 1406760 | c.580_581insC | frameshift_variant | 1.0 |
embR | 1416774 | p.Ala192Thr | missense_variant | 0.14 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472041 | n.196C>A | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472344 | n.499C>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472644 | n.799C>G | non_coding_transcript_exon_variant | 0.12 |
fabG1 | 1673665 | p.Glu76* | stop_gained | 0.33 |
rpsA | 1833441 | c.-101C>T | upstream_gene_variant | 0.15 |
rpsA | 1834177 | c.636A>C | synonymous_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
katG | 2155029 | c.1083C>T | synonymous_variant | 0.14 |
katG | 2155455 | c.657G>A | synonymous_variant | 0.22 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2168727 | p.Gly629Asp | missense_variant | 0.12 |
PPE35 | 2169320 | p.Leu431Phe | missense_variant | 0.35 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
folC | 2746338 | p.Ala421Thr | missense_variant | 0.25 |
folC | 2747079 | p.Glu174* | stop_gained | 0.12 |
pepQ | 2859749 | p.Ala224Pro | missense_variant | 0.25 |
Rv2752c | 3065027 | p.Arg389Trp | missense_variant | 0.12 |
Rv2752c | 3067011 | c.-820C>A | upstream_gene_variant | 0.13 |
Rv2752c | 3067089 | c.-899delT | upstream_gene_variant | 0.15 |
thyX | 3067730 | c.216G>C | synonymous_variant | 0.12 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fbiD | 3339668 | p.Gly184Asp | missense_variant | 0.25 |
Rv3083 | 3448741 | p.Ser80Pro | missense_variant | 0.15 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3475267 | p.Ala421Pro | missense_variant | 0.22 |
Rv3236c | 3612497 | p.Gly207Val | missense_variant | 0.15 |
Rv3236c | 3612813 | p.Thr102Ala | missense_variant | 1.0 |
fbiB | 3640641 | c.-894C>A | upstream_gene_variant | 0.29 |
fbiB | 3640905 | c.-630C>T | upstream_gene_variant | 0.25 |
fbiA | 3641332 | p.Gly264Arg | missense_variant | 1.0 |
fbiA | 3641513 | p.Cys324Phe | missense_variant | 0.17 |
alr | 3840754 | p.Arg223Ser | missense_variant | 0.13 |
alr | 3840755 | c.666C>A | synonymous_variant | 0.12 |
rpoA | 3877677 | c.831G>A | synonymous_variant | 0.22 |
clpC1 | 4039877 | c.828C>A | synonymous_variant | 0.17 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243460 | c.228C>T | synonymous_variant | 1.0 |
embA | 4243476 | p.Leu82Met | missense_variant | 0.12 |
embB | 4245893 | c.-621C>A | upstream_gene_variant | 0.11 |
embB | 4246349 | c.-165C>T | upstream_gene_variant | 0.12 |
embB | 4248296 | p.His595Asn | missense_variant | 0.15 |
embB | 4248494 | p.Pro661Ser | missense_variant | 0.14 |
aftB | 4267647 | p.Asp397Gly | missense_variant | 1.0 |
aftB | 4267688 | c.1149G>T | synonymous_variant | 0.17 |
ethA | 4326454 | c.1020C>T | synonymous_variant | 0.13 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407927 | p.Glu92Asp | missense_variant | 1.0 |