Run ID: SRR5485553
Sample name:
Date: 18-08-2022 08:26:40
Number of reads: 119571
Percentage reads mapped: 99.28
Strain:
Drug-resistance: MDR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761109 | p.Asp435Tyr | missense_variant | 0.96 | rifampicin |
rpsL | 781822 | p.Lys88Arg | missense_variant | 1.0 | streptomycin |
katG | 2155168 | p.Ser315Thr | missense_variant | 1.0 | isoniazid |
pncA | 2288928 | p.Gly105Asp | missense_variant | 1.0 | pyrazinamide |
embB | 4247431 | p.Met306Ile | missense_variant | 1.0 | ethambutol |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 7601 | c.300C>A | synonymous_variant | 0.14 |
gyrA | 7664 | p.Asn121Lys | missense_variant | 0.14 |
rrs | 1472493 | n.648T>G | non_coding_transcript_exon_variant | 0.21 |
rrs | 1473305 | n.1460G>A | non_coding_transcript_exon_variant | 0.2 |