Run ID: SRR6045465
Sample name:
Date: 20-10-2023 18:10:40
Number of reads: 1257900
Percentage reads mapped: 96.7
Strain: lineage4.4
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|---|---|
Rifampicin | ||
Isoniazid | ||
Ethambutol | ||
Pyrazinamide | ||
Streptomycin | ||
Fluoroquinolones | ||
Moxifloxacin | ||
Ofloxacin | ||
Levofloxacin | ||
Ciprofloxacin | ||
Aminoglycosides | ||
Amikacin | ||
Capreomycin | ||
Kanamycin | ||
Cycloserine | ||
Ethionamide | ||
Clofazimine | ||
Para-aminosalicylic_acid | ||
Delamanid | ||
Bedaquiline | ||
Linezolid |
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.4 | Euro-American | S;T | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
rpoC | 762914 | c.-456C>T | upstream_gene_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472544 | n.699C>A | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472566 | n.721G>A | non_coding_transcript_exon_variant | 0.62 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.62 |
rrs | 1472579 | n.734G>C | non_coding_transcript_exon_variant | 0.55 |
rrs | 1472580 | n.735C>T | non_coding_transcript_exon_variant | 0.46 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.73 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.73 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 0.73 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.73 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2167851 | p.Asn921Ser | missense_variant | 1.0 |
PPE35 | 2169265 | p.Ser450Arg | missense_variant | 1.0 |
PPE35 | 2169757 | p.Asn286Asp | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
ribD | 2987278 | p.Ala147Val | missense_variant | 1.0 |
Rv2752c | 3065715 | c.477T>C | synonymous_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
aftB | 4268928 | c.-92C>T | upstream_gene_variant | 1.0 |
aftB | 4269375 | c.-539G>A | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407716 | p.Lys163Glu | missense_variant | 1.0 |