TB-Profiler result

Run: SRR6045764
Summary

Run ID: SRR6045764

Sample name:

Date: 04-04-2023 12:04:45

Number of reads: 21060

Percentage reads mapped: 1.06

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rrs 1472094 n.249T>A non_coding_transcript_exon_variant 1.0
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 1.0
rrs 1472108 n.263C>A non_coding_transcript_exon_variant 1.0
rrs 1472127 n.282C>T non_coding_transcript_exon_variant 1.0
rrs 1472128 n.283G>C non_coding_transcript_exon_variant 1.0
rrs 1472129 n.284G>C non_coding_transcript_exon_variant 1.0
rrs 1472133 n.288G>A non_coding_transcript_exon_variant 1.0
rrs 1472135 n.290C>T non_coding_transcript_exon_variant 1.0
rrs 1472138 n.293C>T non_coding_transcript_exon_variant 1.0
rrs 1472147 n.302G>A non_coding_transcript_exon_variant 1.0
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 1.0
rrs 1472151 n.306C>T non_coding_transcript_exon_variant 1.0
rrs 1472153 n.308G>A non_coding_transcript_exon_variant 1.0
rrs 1472155 n.310C>T non_coding_transcript_exon_variant 1.0
rrs 1472164 n.319G>A non_coding_transcript_exon_variant 1.0
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 1.0
rrs 1472177 n.332C>T non_coding_transcript_exon_variant 1.0
rrs 1472214 n.369C>G non_coding_transcript_exon_variant 1.0
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 1.0
rrs 1472235 n.390G>C non_coding_transcript_exon_variant 1.0
rrs 1472240 n.395G>C non_coding_transcript_exon_variant 1.0
rrs 1472781 n.936C>T non_coding_transcript_exon_variant 1.0
rrs 1472793 n.948A>T non_coding_transcript_exon_variant 1.0
rrs 1472803 n.958T>A non_coding_transcript_exon_variant 1.0
rrs 1472827 n.982G>C non_coding_transcript_exon_variant 1.0
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 1.0
rrs 1472887 n.1042G>C non_coding_transcript_exon_variant 1.0
rrs 1472936 n.1091C>T non_coding_transcript_exon_variant 1.0
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.67
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.67
rrs 1472958 n.1113A>T non_coding_transcript_exon_variant 1.0
rrs 1472959 n.1114T>A non_coding_transcript_exon_variant 0.67
rrs 1472963 n.1118G>A non_coding_transcript_exon_variant 0.67
rrs 1472971 n.1126G>C non_coding_transcript_exon_variant 0.67
rrs 1472982 n.1137G>C non_coding_transcript_exon_variant 0.67
rrs 1472987 n.1142G>T non_coding_transcript_exon_variant 0.67
rrs 1472988 n.1143T>A non_coding_transcript_exon_variant 1.0
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 0.67
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 1.0
rrs 1473002 n.1157G>T non_coding_transcript_exon_variant 0.67
rrs 1473004 n.1159T>A non_coding_transcript_exon_variant 0.67
rrs 1473008 n.1163C>A non_coding_transcript_exon_variant 0.67
rrs 1473009 n.1164T>C non_coding_transcript_exon_variant 0.67
rrs 1473044 n.1199C>G non_coding_transcript_exon_variant 0.67
rrl 1474864 n.1207C>T non_coding_transcript_exon_variant 1.0
rrl 1474869 n.1212G>T non_coding_transcript_exon_variant 1.0
rrl 1474875 n.1218G>A non_coding_transcript_exon_variant 1.0
rrl 1474876 n.1219T>A non_coding_transcript_exon_variant 1.0
rrl 1474892 n.1235G>A non_coding_transcript_exon_variant 1.0
rrl 1474896 n.1239A>G non_coding_transcript_exon_variant 1.0
rrl 1475816 n.2159C>G non_coding_transcript_exon_variant 1.0
rrl 1475817 n.2160A>G non_coding_transcript_exon_variant 1.0
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 1.0
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 1.0
rrl 1476253 n.2596A>G non_coding_transcript_exon_variant 1.0
rrl 1476256 n.2599A>G non_coding_transcript_exon_variant 1.0
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 1.0
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 1.0
rrl 1476336 n.2679C>T non_coding_transcript_exon_variant 0.9
rrl 1476356 n.2699C>A non_coding_transcript_exon_variant 0.94
rrl 1476357 n.2700T>C non_coding_transcript_exon_variant 0.94
rrl 1476358 n.2701T>C non_coding_transcript_exon_variant 0.97
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 0.97
rrl 1476369 n.2712C>T non_coding_transcript_exon_variant 0.97
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 0.97
rrl 1476382 n.2725A>G non_coding_transcript_exon_variant 0.97
rrl 1476383 n.2726T>G non_coding_transcript_exon_variant 0.97
rrl 1476384 n.2727G>T non_coding_transcript_exon_variant 0.95
rrl 1476408 n.2751G>A non_coding_transcript_exon_variant 0.97
rrl 1476411 n.2754G>A non_coding_transcript_exon_variant 0.97
rrl 1476425 n.2768G>A non_coding_transcript_exon_variant 1.0
rrl 1476429 n.2772A>C non_coding_transcript_exon_variant 1.0
rrl 1476442 n.2785T>A non_coding_transcript_exon_variant 0.97
rrl 1476443 n.2786G>T non_coding_transcript_exon_variant 0.97
rrl 1476455 n.2798C>A non_coding_transcript_exon_variant 0.97
rrl 1476456 n.2799A>T non_coding_transcript_exon_variant 0.97
rrl 1476463 n.2806C>T non_coding_transcript_exon_variant 0.97
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.97
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 1.0
rrl 1476512 n.2855C>T non_coding_transcript_exon_variant 1.0
thyA 3073989 c.483T>C synonymous_variant 1.0
thyA 3073995 c.477G>C synonymous_variant 0.67
thyA 3073999 p.Arg158Lys missense_variant 0.67
thyA 3074004 c.468T>C synonymous_variant 1.0
thyA 3074025 p.Phe149Leu missense_variant 0.67
alr 3840427 p.Gly332Cys missense_variant 1.0
clpC1 4040021 c.684A>C synonymous_variant 1.0
clpC1 4040032 p.Val225Ile missense_variant 1.0
clpC1 4040033 c.672G>C synonymous_variant 1.0
clpC1 4040054 c.651G>A synonymous_variant 1.0