Run ID: SRR6046212
Sample name:
Date: 04-04-2023 12:13:04
Number of reads: 1966411
Percentage reads mapped: 84.51
Strain: lineage4.1.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.2 | Euro-American | T;H | None | 1.0 |
lineage4.1.2.1 | Euro-American (Haarlem) | T1;H1 | RD182 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491591 | p.Lys270Met | missense_variant | 1.0 |
mshA | 575679 | p.Asn111Ser | missense_variant | 1.0 |
rpoB | 759620 | c.-187A>C | upstream_gene_variant | 0.22 |
rpoB | 760115 | c.309C>T | synonymous_variant | 1.0 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472517 | n.672T>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472518 | n.673G>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472544 | n.699C>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472566 | n.721G>A | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472579 | n.734G>T | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473252 | n.1407T>C | non_coding_transcript_exon_variant | 0.1 |
rrs | 1473259 | n.1414C>T | non_coding_transcript_exon_variant | 0.11 |
rrs | 1473276 | n.1431A>C | non_coding_transcript_exon_variant | 0.1 |
rrs | 1473316 | n.1471C>T | non_coding_transcript_exon_variant | 0.1 |
rrl | 1473534 | n.-123delC | upstream_gene_variant | 0.11 |
rrl | 1476250 | n.2593C>G | non_coding_transcript_exon_variant | 0.1 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.1 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.1 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.11 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.11 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.1 |
PPE35 | 2170066 | p.Ala183Thr | missense_variant | 0.21 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518076 | c.-39C>T | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
aftB | 4269003 | c.-167C>T | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |