Run ID: SRR6074059
Sample name:
Date: 15-08-2022 11:24:18
Number of reads: 1416668
Percentage reads mapped: 64.59
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 7017 | p.Ala593Val | missense_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
rpoC | 766085 | p.Pro906Ala | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
atpE | 1460992 | c.-53A>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476411 | n.2754G>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476425 | n.2768G>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476442 | n.2785T>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476443 | n.2786G>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476455 | n.2798C>A | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476456 | n.2799A>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476463 | n.2806C>A | non_coding_transcript_exon_variant | 0.12 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2168990 | c.1545_1622delGGCGATGACGCCAGCTAACATCACGGTGGGTGCGTTTGATTTGCCGGGGTTGACGGTGCCGTCGTTGACGATTCCAGC | disruptive_inframe_deletion | 1.0 |
PPE35 | 2169071 | c.1542A>G | synonymous_variant | 0.13 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518051 | c.-64A>G | upstream_gene_variant | 1.0 |
whiB7 | 3568503 | c.177G>T | synonymous_variant | 1.0 |
alr | 3840764 | c.657G>C | synonymous_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4247151 | p.Arg213Gln | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
PPE35 | 2168990 | c.1544_1622delNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT | frameshift_variant | 1.0 |
Rv3083 | 3448500 | c.-3_*1408del | transcript_ablation | 1.0 |