Rv1918c - c.1545_1622delGGCGATGACGCCAGCTAACATCACGGTGGGTGCGTTTGATTTGCCGGGGTTGACGGTGCCGTCGTTGACGATTCCAGC
Drug resistance types
329 Sensitive
0 RR-TB
5 HR-TB
0 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
9 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.8 | 319 |
| lineage4.3.2 | 6 |
| lineage4.1.2;lineage4.2.2.2 | 1 |
| lineage4.5 | 5 |
| lineage4.6.2.2 | 1 |
| lineage4.1.2 | 4 |
| lineage4.3.4.2.1 | 1 |
| lineage4.3.4.1 | 1 |
| lineage1.2.2.2 | 2 |
| lineage4.3.3 | 1 |
| lineage1.2.1.2.1 | 2 |
| lineage4.7 | 1 |
| lineage4.1.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 345 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR16058633 | Sensitive | lineage4.8 | None | ERR9125619 | Sensitive | lineage4.8 | None | ERR9121487 | Sensitive | lineage4.3.2 | None | SRR6061408 | Sensitive | lineage4.8 | ca | SRR6982231 | Sensitive | lineage4.1.2;lineage4.2.2.2 | None | SRR6067270 | Sensitive | lineage4.8 | ca | SRR2502837 | Sensitive | lineage4.8 | None | SRR2502821 | Sensitive | lineage4.8 | None | SRR16058641 | Sensitive | lineage4.8 | None | SRR16057956 | Sensitive | lineage4.8 | None | SRR16058183 | Sensitive | lineage4.8 | None | SRR16058571 | Sensitive | lineage4.8 | None | SRR16058272 | Sensitive | lineage4.8 | None | SRR16058421 | Sensitive | lineage4.8 | None | ERR9125512 | Sensitive | lineage4.8 | None | SRR2502823 | Sensitive | lineage4.8 | None | SRR16058431 | Sensitive | lineage4.8 | None | SRR16057893 | Sensitive | lineage4.8 | None | ERR13276186 | Other | lineage4.5 | None | ERR9125706 | Sensitive | lineage4.8 | None | ERR9786587 | Sensitive | lineage4.6.2.2 | None | ERR9125536 | Sensitive | lineage4.8 | None | ERR2515932 | Sensitive | lineage4.3.2 | za | ERR9125505 | Sensitive | lineage4.8 | None | ERR9125648 | Sensitive | lineage4.8 | None | DRR188796 | Other | lineage4.5 | None | SRR1640706 | Sensitive | lineage4.8 | ca | SRR16058150 | Sensitive | lineage4.8 | None | SRR2502815 | Sensitive | lineage4.8 | None | SRR16058337 | Other | lineage4.8 | None | ERR13291582 | Sensitive | lineage4.5 | None | ERR13291582 | Sensitive | lineage4.5 | None | SRR6061400 | Sensitive | lineage4.8 | ca | ERR551161 | Sensitive | lineage4.8 | None | SRR2101357 | Other | lineage4.1.2 | None | SRR2101370 | Other | lineage4.1.2 | None | ERR1193689 | Sensitive | lineage4.3.4.2.1 | sd | ERR1193742 | Sensitive | lineage4.3.4.1 | pt | SRR6061395 | Sensitive | lineage4.8 | ca | SRR6061427 | Sensitive | lineage4.8 | ca | SRR6074067 | Sensitive | lineage4.8 | ca | SRR6064845 | Sensitive | lineage4.8 | ca | SRR6067245 | Sensitive | lineage4.8 | ca | SRR6067274 | Sensitive | lineage4.8 | ca | SRR6064838 | Sensitive | lineage4.8 | ca | SRR6061390 | Sensitive | lineage4.8 | ca | SRR6061390 | Sensitive | lineage4.8 | ca | SRR6064842 | Sensitive | lineage4.8 | ca | SRR6064842 | Sensitive | lineage4.8 | ca | SRR6064853 | Sensitive | lineage4.8 | ca | SRR6064853 | Sensitive | lineage4.8 | ca | SRR6063494 | Sensitive | lineage4.8 | ca | SRR6063494 | Sensitive | lineage4.8 | ca | SRR6067279 | Sensitive | lineage4.8 | ca | SRR6063511 | Sensitive | lineage4.8 | ca | SRR6064844 | Sensitive | lineage4.8 | ca | SRR6063510 | Sensitive | lineage4.8 | ca | SRR6074042 | Sensitive | lineage4.8 | ca | SRR6061403 | Sensitive | lineage4.8 | ca | SRR6061403 | Sensitive | lineage4.8 | ca | SRR6074073 | Sensitive | lineage4.8 | ca | SRR6074048 | Sensitive | lineage4.8 | ca | SRR6067263 | Sensitive | lineage4.8 | ca | SRR6067284 | Sensitive | lineage4.8 | ca | SRR6067284 | Sensitive | lineage4.8 | ca | SRR6061410 | Sensitive | lineage4.8 | ca | SRR6061410 | Sensitive | lineage4.8 | ca | SRR6061383 | Sensitive | lineage4.8 | ca | SRR6067253 | Sensitive | lineage4.8 | ca | SRR6067253 | Sensitive | lineage4.8 | ca | SRR6064849 | Sensitive | lineage4.8 | ca | SRR6064849 | Sensitive | lineage4.8 | ca | SRR6064866 | Sensitive | lineage4.8 | ca | SRR6064866 | Sensitive | lineage4.8 | ca | SRR6063503 | Sensitive | lineage4.8 | ca | SRR6067257 | Sensitive | lineage4.8 | ca | SRR6067257 | Sensitive | lineage4.8 | ca | SRR6063474 | Sensitive | lineage4.8 | ca | SRR6067259 | Sensitive | lineage4.8 | ca | SRR6067286 | Sensitive | lineage4.8 | ca | SRR6067286 | Sensitive | lineage4.8 | ca | SRR6064859 | Sensitive | lineage4.8 | ca | SRR6064860 | Sensitive | lineage4.8 | ca | SRR6061424 | Sensitive | lineage4.8 | ca | SRR6064864 | Sensitive | lineage4.8 | ca | SRR6064864 | Sensitive | lineage4.8 | ca | SRR6063499 | Sensitive | lineage4.8 | ca | SRR6064843 | Sensitive | lineage4.8 | ca | SRR6074069 | Sensitive | lineage4.8 | ca | SRR6074069 | Sensitive | lineage4.8 | ca | SRR6064828 | Sensitive | lineage4.8 | ca | SRR6064828 | Sensitive | lineage4.8 | ca | SRR6067260 | Sensitive | lineage4.8 | ca | SRR6074044 | Sensitive | lineage4.8 | ca | SRR6061422 | Sensitive | lineage4.8 | ca | SRR6061422 | Sensitive | lineage4.8 | ca | SRR6063505 | Sensitive | lineage4.8 | ca | SRR6063505 | Sensitive | lineage4.8 | ca | SRR6064847 | Other | lineage4.8 | ca | SRR6063489 | Sensitive | lineage4.8 | ca | SRR6074062 | Sensitive | lineage4.8 | ca | SRR6074062 | Sensitive | lineage4.8 | ca | SRR6063498 | Sensitive | lineage4.8 | ca | SRR6063498 | Sensitive | lineage4.8 | ca | SRR6064833 | Sensitive | lineage4.8 | ca | SRR6061387 | Sensitive | lineage4.8 | ca | SRR6067275 | Sensitive | lineage4.8 | ca | SRR6067254 | Sensitive | lineage4.8 | ca | SRR6067256 | Sensitive | lineage4.8 | ca | SRR6061385 | Sensitive | lineage4.8 | ca | SRR6074053 | Sensitive | lineage4.8 | ca | SRR6067268 | Sensitive | lineage4.8 | ca | SRR6063516 | Sensitive | lineage4.8 | ca | SRR6063516 | Sensitive | lineage4.8 | ca | SRR6063475 | Sensitive | lineage4.8 | ca | SRR6061386 | Sensitive | lineage4.8 | ca | SRR6064823 | Sensitive | lineage4.8 | ca | SRR6064823 | Sensitive | lineage4.8 | ca | SRR6064857 | Sensitive | lineage4.8 | ca | SRR6063502 | Sensitive | lineage4.8 | ca | SRR6063502 | Sensitive | lineage4.8 | ca | SRR6067264 | Sensitive | lineage4.8 | ca | SRR6063472 | Sensitive | lineage4.8 | ca | SRR6063472 | Sensitive | lineage4.8 | ca | SRR6063517 | Sensitive | lineage4.8 | ca | SRR6061426 | Sensitive | lineage4.8 | ca | SRR6061426 | Sensitive | lineage4.8 | ca | SRR6067272 | Sensitive | lineage4.8 | ca | SRR6067272 | Sensitive | lineage4.8 | ca | SRR6067252 | Sensitive | lineage4.8 | ca | SRR6064858 | Sensitive | lineage4.8 | ca | SRR6064824 | Sensitive | lineage4.8 | ca | SRR6061398 | Sensitive | lineage4.8 | ca | SRR6061398 | Sensitive | lineage4.8 | ca | SRR6063477 | HR-TB | lineage4.8 | ca | SRR6063477 | HR-TB | lineage4.8 | ca | SRR6063484 | Sensitive | lineage4.8 | ca | SRR6063484 | Sensitive | lineage4.8 | ca | SRR6074063 | Sensitive | lineage4.8 | ca | SRR6074063 | Sensitive | lineage4.8 | ca | SRR6064854 | Sensitive | lineage4.8 | ca | SRR6064825 | Sensitive | lineage4.8 | ca | SRR6064825 | Sensitive | lineage4.8 | ca | SRR6064855 | Sensitive | lineage4.8 | ca | SRR6064855 | Sensitive | lineage4.8 | ca | SRR6061417 | Sensitive | lineage4.8 | ca | SRR6061417 | Sensitive | lineage4.8 | ca | SRR6061404 | Sensitive | lineage4.8 | ca | SRR6067255 | Sensitive | lineage4.8 | ca | SRR6074051 | Sensitive | lineage4.8 | ca | SRR6074051 | Sensitive | lineage4.8 | ca | SRR6074068 | Sensitive | lineage4.8 | ca | SRR6061412 | Sensitive | lineage4.8 | ca | SRR6061412 | Sensitive | lineage4.8 | ca | SRR6063497 | Sensitive | lineage4.8 | ca | SRR6063497 | Sensitive | lineage4.8 | ca | SRR6064848 | Sensitive | lineage4.8 | ca | SRR6064848 | Sensitive | lineage4.8 | ca | SRR6061405 | Sensitive | lineage4.8 | ca | SRR6067280 | Sensitive | lineage4.8 | ca | SRR6061415 | Sensitive | lineage4.8 | ca | SRR6061415 | Sensitive | lineage4.8 | ca | SRR6063490 | Sensitive | lineage4.8 | ca | SRR6063490 | Sensitive | lineage4.8 | ca | SRR6064837 | Sensitive | lineage4.8 | ca | SRR6064837 | Sensitive | lineage4.8 | ca | SRR6061413 | Sensitive | lineage4.8 | ca | SRR6063512 | Sensitive | lineage4.8 | ca | SRR6074072 | Sensitive | lineage4.8 | ca | SRR6061389 | Sensitive | lineage4.8 | ca | SRR6064836 | Sensitive | lineage4.8 | ca | SRR6074045 | Sensitive | lineage4.8 | ca | SRR6074045 | Sensitive | lineage4.8 | ca | SRR6064827 | Sensitive | lineage4.8 | ca | SRR6064839 | Sensitive | lineage4.8 | ca | SRR6061396 | Sensitive | lineage4.8 | ca | SRR6063500 | Sensitive | lineage4.8 | ca | SRR6063500 | Sensitive | lineage4.8 | ca | SRR6061411 | Sensitive | lineage4.8 | ca | SRR6063495 | Sensitive | lineage4.8 | ca | SRR6063495 | Sensitive | lineage4.8 | ca | SRR6064820 | Sensitive | lineage4.8 | ca | SRR6067281 | Sensitive | lineage4.8 | ca | SRR6063506 | Sensitive | lineage4.8 | ca | SRR6067258 | Sensitive | lineage4.8 | ca | SRR6067258 | Sensitive | lineage4.8 | ca | SRR6067249 | Sensitive | lineage4.8 | ca | SRR6067249 | Sensitive | lineage4.8 | ca | SRR6067248 | Sensitive | lineage4.8 | ca | SRR6064862 | Sensitive | lineage4.8 | ca | SRR6063479 | Sensitive | lineage4.8 | ca | SRR6067282 | Sensitive | lineage4.8 | ca | SRR6064863 | Sensitive | lineage4.8 | ca | SRR6061380 | HR-TB | lineage4.8 | ca | SRR6061402 | Sensitive | lineage4.8 | ca | SRR6061402 | Sensitive | lineage4.8 | ca | SRR6063486 | Sensitive | lineage4.8 | ca | SRR6063486 | Sensitive | lineage4.8 | ca | SRR6067244 | Sensitive | lineage4.8 | ca | SRR6063487 | Sensitive | lineage4.8 | ca | SRR6063487 | Sensitive | lineage4.8 | ca | SRR6074060 | Sensitive | lineage4.8 | ca | SRR6074060 | Sensitive | lineage4.8 | ca | SRR6064821 | Sensitive | lineage4.8 | ca | SRR6064821 | Sensitive | lineage4.8 | ca | SRR6064818 | Sensitive | lineage4.8 | ca | SRR6063491 | Sensitive | lineage4.8 | ca | SRR6063491 | Sensitive | lineage4.8 | ca | SRR6061384 | Sensitive | lineage4.8 | ca | SRR6061384 | Sensitive | lineage4.8 | ca | SRR6063481 | Sensitive | lineage4.8 | ca | SRR6063481 | Sensitive | lineage4.8 | ca | SRR6074052 | Sensitive | lineage4.8 | ca | SRR6074052 | Sensitive | lineage4.8 | ca | SRR6074054 | Sensitive | lineage4.8 | ca | SRR6074054 | Sensitive | lineage4.8 | ca | SRR6063485 | Sensitive | lineage4.8 | ca | SRR6064829 | Sensitive | lineage4.8 | ca | SRR6074047 | Sensitive | lineage4.8 | ca | SRR6074047 | Sensitive | lineage4.8 | ca | SRR6063496 | Sensitive | lineage4.8 | ca | SRR6063496 | Sensitive | lineage4.8 | ca | SRR6064851 | Sensitive | lineage4.8 | ca | SRR6064851 | Sensitive | lineage4.8 | ca | SRR6061382 | Sensitive | lineage4.8 | ca | SRR6061425 | Sensitive | lineage4.8 | ca | SRR6061425 | Sensitive | lineage4.8 | ca | SRR6061418 | Sensitive | lineage4.8 | ca | SRR6067262 | Sensitive | lineage4.8 | ca | SRR6067283 | Sensitive | lineage4.8 | ca | SRR6063476 | Sensitive | lineage4.8 | ca | SRR6061401 | Sensitive | lineage4.8 | ca | SRR6061401 | Sensitive | lineage4.8 | ca | SRR6063492 | Sensitive | lineage4.8 | ca | SRR6063492 | Sensitive | lineage4.8 | ca | SRR6063471 | Sensitive | lineage4.8 | ca | SRR6063471 | Sensitive | lineage4.8 | ca | SRR6063507 | Sensitive | lineage4.8 | ca | SRR6063501 | Sensitive | lineage4.8 | ca | SRR6067239 | Sensitive | lineage4.8 | ca | SRR6067239 | Sensitive | lineage4.8 | ca | SRR6074050 | Sensitive | lineage4.8 | ca | SRR6067250 | Sensitive | lineage4.8 | ca | SRR6067250 | Sensitive | lineage4.8 | ca | SRR6067277 | Sensitive | lineage4.8 | ca | SRR6067271 | Sensitive | lineage4.8 | ca | SRR6067271 | Sensitive | lineage4.8 | ca | SRR6064830 | Sensitive | lineage4.8 | ca | SRR6061381 | Sensitive | lineage4.8 | ca | SRR6061381 | Sensitive | lineage4.8 | ca | SRR6063504 | Sensitive | lineage4.8 | ca | SRR6061397 | Sensitive | lineage4.8 | ca | SRR6074066 | Sensitive | lineage4.8 | ca | SRR6063482 | Sensitive | lineage4.8 | ca | SRR6063482 | Sensitive | lineage4.8 | ca | SRR6063480 | Sensitive | lineage4.8 | ca | SRR6061393 | Sensitive | lineage4.8 | ca | SRR6064846 | Sensitive | lineage4.8 | ca | SRR6064835 | Sensitive | lineage4.8 | ca | SRR6064835 | Sensitive | lineage4.8 | ca | SRR6064831 | Sensitive | lineage4.8 | ca | SRR6064831 | Sensitive | lineage4.8 | ca | SRR6067285 | Sensitive | lineage4.8 | ca | SRR6074046 | Sensitive | lineage4.8 | ca | SRR6063514 | Sensitive | lineage4.8 | ca | SRR6067267 | Sensitive | lineage4.8 | ca | SRR6067267 | Sensitive | lineage4.8 | ca | SRR6064840 | Sensitive | lineage4.8 | ca | SRR6067240 | Sensitive | lineage4.8 | ca | SRR6067240 | Sensitive | lineage4.8 | ca | SRR6064817 | Sensitive | lineage4.8 | ca | SRR6064817 | Sensitive | lineage4.8 | ca | SRR6067246 | Sensitive | lineage4.8 | ca | SRR6067246 | Sensitive | lineage4.8 | ca | SRR6074055 | Sensitive | lineage4.8 | ca | SRR6074055 | Sensitive | lineage4.8 | ca | SRR6067265 | Sensitive | lineage4.8 | ca | SRR6074056 | Sensitive | lineage4.8 | ca | SRR6074056 | Sensitive | lineage4.8 | ca | SRR6061391 | Sensitive | lineage4.8 | ca | SRR6063518 | Sensitive | lineage4.8 | ca | ERR2515932 | Sensitive | lineage4.3.2 | za | SRR29052944 | Other | lineage1.2.2.2 | None | ERR9125477 | HR-TB | lineage4.8 | None | SRR6063518 | Sensitive | lineage4.8 | ca | SRR6067237 | Sensitive | lineage4.8 | ca | SRR6067237 | Sensitive | lineage4.8 | ca | SRR6074049 | Sensitive | lineage4.8 | ca | SRR6074049 | Sensitive | lineage4.8 | ca | SRR6064841 | Sensitive | lineage4.8 | ca | SRR6064819 | Sensitive | lineage4.8 | ca | SRR6064819 | Sensitive | lineage4.8 | ca | SRR6063483 | Sensitive | lineage4.8 | ca | SRR6063483 | Sensitive | lineage4.8 | ca | SRR6074070 | Sensitive | lineage4.8 | ca | SRR6074070 | Sensitive | lineage4.8 | ca | SRR6063513 | Sensitive | lineage4.8 | ca | SRR6063493 | Sensitive | lineage4.8 | ca | SRR6067238 | Sensitive | lineage4.8 | ca | SRR6067238 | Sensitive | lineage4.8 | ca | SRR6074064 | Sensitive | lineage4.8 | ca | SRR6063520 | Sensitive | lineage4.8 | ca | SRR6063520 | Sensitive | lineage4.8 | ca | SRR6064861 | Sensitive | lineage4.8 | ca | SRR6061429 | Sensitive | lineage4.8 | ca | SRR6063509 | Sensitive | lineage4.8 | ca | SRR6063509 | Sensitive | lineage4.8 | ca | SRR6074058 | Sensitive | lineage4.8 | ca | SRR6074058 | Sensitive | lineage4.8 | ca | SRR6061421 | Sensitive | lineage4.8 | ca | SRR6061421 | Sensitive | lineage4.8 | ca | SRR6064850 | Sensitive | lineage4.8 | ca | SRR6074071 | Sensitive | lineage4.8 | ca | SRR6074071 | Sensitive | lineage4.8 | ca | SRR6064856 | Sensitive | lineage4.8 | ca | SRR6067243 | Sensitive | lineage4.8 | ca | SRR6067269 | Sensitive | lineage4.8 | ca | SRR6067276 | Sensitive | lineage4.8 | ca | SRR6067276 | Sensitive | lineage4.8 | ca | ERR2515590 | Pre-XDR-TB | lineage4.1.2 | za | ERR2515590 | Pre-XDR-TB | lineage4.1.2 | za | ERR9125611 | Sensitive | lineage4.8 | None | ERR9121491 | Sensitive | lineage4.3.2 | None | SRR28409484 | Sensitive | lineage4.3.3 | None | SRR16058458 | Sensitive | lineage1.2.1.2.1 | None | ERR4195855 | Sensitive | lineage4.3.2 | None | SRR21658765 | Other | lineage1.2.2.2 | None | SRR6061414 | Sensitive | lineage4.8 | ca | ERR9125881 | Sensitive | lineage4.8 | None | ERR552685 | Sensitive | lineage4.7 | None | ERR9125222 | Sensitive | lineage4.8 | None | SRR16057965 | Sensitive | lineage4.8 | None | ERR9125226 | Sensitive | lineage4.8 | None | SRR2502849 | Sensitive | lineage4.8 | None | ERR9891973 | Sensitive | lineage4.1.2.1 | None | SRR1640713 | Sensitive | lineage4.8 | ca | SRR16057896 | Sensitive | lineage4.8 | None | SRR1640696 | Sensitive | lineage4.8 | ca | ERR9125639 | Sensitive | lineage4.8 | None | SRR16058671 | HR-TB | lineage4.8 | None | ERR9125874 | Sensitive | lineage1.2.1.2.1 | None | ERR4195859 | Sensitive | lineage4.3.2 | None | SRR21686111 | Sensitive | lineage4.5 | None | ERR9125573 | Sensitive | lineage4.8 | None | ERR9125399 | Other | lineage4.8 | None |
|---|
