Run ID: SRR6832271
Sample name:
Date: 04-04-2023 17:19:58
Number of reads: 2199507
Percentage reads mapped: 99.48
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 0.96 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7884 | p.Arg195Gly | missense_variant | 1.0 |
mshA | 575891 | p.Ala182Thr | missense_variant | 1.0 |
rpoC | 763348 | c.-22C>T | upstream_gene_variant | 0.89 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 0.89 |
rpsA | 1833915 | p.Ala125Val | missense_variant | 0.98 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2170066 | p.Ala183Thr | missense_variant | 0.14 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
Rv3236c | 3612009 | p.Ala370Thr | missense_variant | 0.12 |
embC | 4242162 | p.Ala767Val | missense_variant | 0.15 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4242928 | c.-305A>G | upstream_gene_variant | 0.93 |
embB | 4247595 | p.Cys361Ser | missense_variant | 0.94 |
aftB | 4268040 | p.Leu266Pro | missense_variant | 0.94 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |