Run ID: SRR6982024
Sample name:
Date: 04-04-2023 18:25:04
Number of reads: 659043
Percentage reads mapped: 99.3
Strain: lineage4.4.1.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.4 | Euro-American | S;T | None | 0.99 |
lineage4.4.1 | Euro-American (S-type) | S;T | None | 0.99 |
lineage4.4.1.1 | Euro-American | S;Orphans | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9138 | p.Gln613Glu | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
mshA | 576713 | c.1368_1369delCG | frameshift_variant | 0.11 |
rpoB | 762408 | p.Ala868Thr | missense_variant | 0.11 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 777416 | c.1065G>T | synonymous_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102990 | p.Val18Ala | missense_variant | 1.0 |
PPE35 | 2168479 | p.Thr712Pro | missense_variant | 1.0 |
PPE35 | 2169840 | p.Gly258Asp | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2288895 | c.338_346delGCACGCCAC | disruptive_inframe_deletion | 0.3 |
ribD | 2986895 | c.57G>A | synonymous_variant | 0.14 |
Rv2752c | 3066104 | p.Asn30Asp | missense_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fbiD | 3338999 | c.-119T>C | upstream_gene_variant | 0.1 |
Rv3083 | 3448608 | c.105G>A | synonymous_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
whiB7 | 3568779 | c.-100T>C | upstream_gene_variant | 0.9 |
Rv3236c | 3612455 | p.Arg221Leu | missense_variant | 0.11 |
Rv3236c | 3612665 | p.Val151Ala | missense_variant | 1.0 |
fbiB | 3642216 | p.Thr228Ala | missense_variant | 0.12 |
embC | 4240576 | c.714A>G | synonymous_variant | 0.13 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4245838 | p.Val869Ala | missense_variant | 0.13 |
embB | 4249009 | c.2496G>A | synonymous_variant | 0.16 |
embB | 4249126 | c.2613G>A | synonymous_variant | 0.12 |
aftB | 4267471 | p.Asn456Tyr | missense_variant | 0.14 |
aftB | 4267924 | p.Val305Leu | missense_variant | 0.29 |
aftB | 4268248 | c.589C>T | synonymous_variant | 0.12 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |