EBG00000313325 - n.514A>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
8 RR-TB
21 HR-TB
78 MDR-TB
21 Pre-XDR-TB
3 XDR-TB
21 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.2.1 | 16 |
| lineage4.4.2 | 1 |
| lineage2.2.1.1 | 1 |
| lineage2.2.1 | 14 |
| lineage4.3.2 | 3 |
| lineage4.3.3 | 10 |
| lineage1.2.2.2 | 41 |
| lineage6.2.2 | 1 |
| lineage4.3.2.1 | 4 |
| lineage4.4.1.1 | 3 |
| lineage4.3.3;lineage4.9 | 1 |
| lineage2.2.2 | 4 |
| lineage3 | 13 |
| lineage4.3 | 6 |
| lineage1.1.3.3 | 1 |
| lineage4.8 | 9 |
| lineage1.2.1.2 | 2 |
| lineage4.5 | 4 |
| lineage4 | 6 |
| lineage4.1.1.3 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage4.3.4.1 | 1 |
| lineage4.3.4.2 | 1 |
| lineage4.1.1 | 2 |
| lineage4.2.2 | 1 |
| lineage1.2.2.2;lineage4.3.4.2.1 | 1 |
| lineage2.1 | 1 |
| lineage1.1.2;lineage1.2.2.2;lineage4 | 1 |
| lineage1.2.1.2.1 | 1 |
| 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 152 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR5865508 | MDR-TB | lineage4.1.2.1 | None | SRR25515845 | Pre-XDR-TB | lineage4.4.2 | None | SRR5073718 | Other | lineage2.2.1.1 | vn | SRR5073629 | HR-TB | lineage2.2.1 | vn | ERR1035350 | MDR-TB | lineage4.3.2 | br | SRR833011 | Other | lineage4.3.3 | None | ERR10680150 | MDR-TB | lineage4.1.2.1 | None | ERR126605 | MDR-TB | lineage1.2.2.2 | mw | ERR10680046 | MDR-TB | lineage6.2.2 | None | ERR5987360 | MDR-TB | lineage4.3.2.1 | None | ERR7737869 | MDR-TB | lineage4.4.1.1 | None | SRR833002 | Other | lineage4.3.3;lineage4.9 | None | SRR15316476 | MDR-TB | lineage2.2.2 | None | ERR9907699 | MDR-TB | lineage4.3.3 | None | SRR29772549 | MDR-TB | lineage2.2.1 | None | ERR4553789 | RR-TB | lineage1.2.2.2 | None | ERR13261680 | MDR-TB | lineage4.3.3 | None | SRR26800433 | Other | lineage3 | None | SRR18912071 | HR-TB | lineage2.2.1 | None | SRR15316314 | MDR-TB | lineage2.2.1 | None | ERR11464997 | HR-TB | lineage1.2.2.2 | None | ERR9120045 | MDR-TB | lineage4.3.2.1 | None | ERR13284210 | MDR-TB | lineage4.3 | None | SRR22251987 | Other | lineage1.1.3.3 | None | SRR19428621 | MDR-TB | lineage1.2.2.2 | None | SRR11638839 | XDR-TB | lineage3 | None | SRR29273794 | Pre-XDR-TB | lineage4.8 | None | SRR29231805 | RR-TB | lineage4.8 | None | SRR24114364 | Pre-XDR-TB | lineage3 | None | ERR181933 | MDR-TB | lineage1.2.2.2 | mw | ERR13259966 | MDR-TB | lineage1.2.1.2 | None | ERR212054 | MDR-TB | lineage1.2.2.2 | mw | ERR4796486 | MDR-TB | lineage3 | in | ERR4798154 | Other | lineage1.2.2.2 | in | SRR5535926 | HR-TB | lineage1.2.2.2 | None | ERR13267494 | MDR-TB | lineage4.5 | None | ERR5866468 | MDR-TB | lineage4.3.3 | None | SRR24673552 | MDR-TB | lineage4.1.2.1 | None | SRR29016885 | Pre-XDR-TB | lineage1.2.2.2 | None | SRR28393317 | MDR-TB | lineage4 | None | ERR11465994 | HR-TB | lineage1.2.2.2 | None | ERR11488778 | MDR-TB | lineage4.4.1.1 | None | SRR28046118 | Other | lineage3 | None | ERR3287819 | MDR-TB | lineage4 | pe | ERR2707073 | RR-TB | lineage4.8 | cd | ERR845936 | MDR-TB | lineage4 | pe | ERR10465881 | HR-TB | lineage4.1.1.3 | None | ERR551787 | HR-TB | lineage4.1.2.1 | de | ERR067610 | HR-TB | lineage2.2.1 | ru | ERR245836 | MDR-TB | lineage1.2.2.2 | mw | ERR245670 | MDR-TB | lineage1.2.2.2 | mw | ERR245651 | MDR-TB | lineage1.2.2.2 | mw | SRR12416832 | Pre-XDR-TB | lineage4.4.1.1.1 | None | ERR5865512 | MDR-TB | lineage4.1.2.1 | None | ERR13276352 | MDR-TB | lineage1.2.2.2 | None | ERR9286033 | HR-TB | lineage4.3 | None | ERR11043159 | MDR-TB | lineage4.3 | None | ERR2145499 | Other | lineage2.2.1 | None | SRR10525374 | Pre-XDR-TB | lineage4.8 | None | SRR13591399 | Other | lineage4.3.4.1 | None | ERR688026 | MDR-TB | lineage3 | None | ERR5866594 | MDR-TB | lineage4.1.2.1 | None | SRR24709981 | RR-TB | lineage4.3.3 | None | SRR4423177 | Pre-XDR-TB | lineage1.2.2.2 | None | SRR16115033 | HR-TB | lineage2.2.1 | None | SRR29274156 | Pre-XDR-TB | lineage4.8 | None | SRR29017160 | Pre-XDR-TB | lineage1.2.2.2 | None | SRR29274198 | Pre-XDR-TB | lineage4.8 | None | ERR5866469 | MDR-TB | lineage4.3.3 | None | SRR29017647 | Pre-XDR-TB | lineage1.2.2.2 | None | SRR29017651 | Pre-XDR-TB | lineage1.2.2.2 | None | SRR21685345 | MDR-TB | lineage4.3.4.2 | None | ERR6865852 | Other | lineage4.1.1 | None | ERR11466222 | HR-TB | lineage1.2.2.2 | None | SRR23340121 | MDR-TB | lineage4.8 | None | SRR20958137 | Other | lineage4.1.2.1 | None | ERR11465991 | HR-TB | lineage1.2.2.2 | None | ERR13291102 | MDR-TB | lineage1.2.1.2 | None | ERR779679 | MDR-TB | lineage1.2.2.2 | None | ERR11776021 | Other | lineage4.1.2.1 | None | ERR5865509 | MDR-TB | lineage4.1.2.1 | None | ERR4553582 | RR-TB | lineage1.2.2.2 | None | ERR11044430 | Other | lineage4.2.2 | None | ERR2510697 | MDR-TB | lineage3 | pk | ERR1035344 | MDR-TB | lineage4.3.2 | br | ERR2510467 | Pre-XDR-TB | lineage3 | pk | SRR21277567 | Pre-XDR-TB | lineage4.5 | None | ERR2145491 | Other | lineage2.2.1 | None | SRR23340064 | MDR-TB | lineage4.8 | None | ERR5987415 | MDR-TB | lineage4.3.2.1 | None | ERR13195561 | MDR-TB | lineage2.2.2 | None | ERR4831614 | MDR-TB | lineage2.2.1 | vn | ERR775389 | MDR-TB | lineage4 | pe | ERR10680121 | MDR-TB | lineage4.1.2.1 | None | ERR2510383 | Pre-XDR-TB | lineage3 | None | ERR2510171 | MDR-TB | lineage4 | pe | ERR4814957 | HR-TB | lineage4.3 | gb | ERR161085 | MDR-TB | lineage1.2.2.2 | mw | ERR221596 | MDR-TB | lineage1.2.2.2 | mw | ERR164021 | MDR-TB | lineage1.2.2.2;lineage4.3.4.2.1 | mw | DRR473920 | Other | lineage2.2.2 | None | SRR29017606 | MDR-TB | lineage1.2.2.2 | None | ERR181793 | MDR-TB | lineage1.2.2.2 | mw | ERR736807 | MDR-TB | lineage1.2.2.2 | None | SRR5065629 | Other | lineage4.1.2.1 | vn | ERR9120046 | MDR-TB | lineage4.3.2.1 | None | ERR2515247 | MDR-TB | lineage4.4.1.1 | za | SRR15316025 | Pre-XDR-TB | lineage4.5 | None | ERR9286002 | HR-TB | lineage4.3 | None | ERR11082680 | Pre-XDR-TB | lineage4.3.3 | None | SRR8651617 | Pre-XDR-TB | lineage4.5 | None | ERR11465075 | MDR-TB | lineage1.2.2.2 | None | ERR4553792 | RR-TB | lineage1.2.2.2 | None | SRR23340104 | MDR-TB | lineage4.8 | None | ERR13265108 | Other | lineage2.2.1 | None | SRR29230873 | Other | lineage3 | None | ERR4813639 | HR-TB | lineage4.3 | None | SRR833094 | Other | lineage4.3.3 | None | ERR11465995 | HR-TB | lineage1.2.2.2 | None | SRR22251627 | HR-TB | lineage1.2.2.2 | None | ERR13284106 | Pre-XDR-TB | lineage4.3.3 | None | ERR736820 | MDR-TB | lineage1.2.2.2 | None | ERR11466223 | HR-TB | lineage1.2.2.2 | None | SRR12882567 | HR-TB | lineage1.2.2.2 | None | ERR10680195 | MDR-TB | lineage4.1.2.1 | None | SRR29017060 | XDR-TB | lineage1.2.2.2 | None | SRR11662182 | MDR-TB | lineage2.1 | None | SRR29289395 | XDR-TB | lineage3 | None | ERR163962 | MDR-TB | lineage1.2.2.2 | mw | ERR1035277 | Pre-XDR-TB | lineage4.3.2 | br | ERR13292245 | HR-TB | lineage2.2.1 | None | ERR181930 | MDR-TB | lineage1.2.2.2 | mw | ERR163947 | MDR-TB | lineage1.1.2;lineage1.2.2.2;lineage4 | mw | ERR4827808 | MDR-TB | lineage2.2.1 | None | ERR552534 | MDR-TB | lineage4.1.2.1 | None | ERR11049950 | MDR-TB | lineage4.1.2.1 | None | SRR27069390 | MDR-TB | lineage2.2.1 | None | SRR28393420 | MDR-TB | lineage4 | None | SRR27069369 | MDR-TB | lineage2.2.1 | None | SRR6397526 | HR-TB | lineage1.2.1.2.1 | ca | SRR16088099 | MDR-TB | lineage4.1.2.1 | None | ERR1034594 | MDR-TB | lineage3 | pk | ERR1063861 | MDR-TB | lineage1.2.2.2 | None | ERR4553577 | RR-TB | lineage1.2.2.2 | None | ERR4553882 | RR-TB | None | ERR2516956 | MDR-TB | lineage3 | gb | ERR245829 | MDR-TB | lineage1.2.2.2 | mw | ERR773802 | MDR-TB | lineage1.2.2.2 | None | ERR4178155 | Other | lineage4.1.1 | None | ERR5865513 | MDR-TB | lineage4.1.2.1 | None | SAMN02053769 | Other | lineage4.3.3 | za | ERR3273206 | Pre-XDR-TB | lineage2.2.2 | None |
|---|
