Rv0010c - c.-73T>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
41 Sensitive
8 RR-TB
11 HR-TB
30 MDR-TB
19 Pre-XDR-TB
5 XDR-TB
2 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.1.1 | 7 |
| lineage4.1.2 | 3 |
| lineage1.1.1.1;lineage2.2.1 | 2 |
| lineage2.2.1 | 42 |
| lineage4.1.2.1 | 3 |
| lineage4.5 | 7 |
| lineage3.1.1 | 2 |
| lineage1.1.1.1 | 2 |
| lineage3 | 6 |
| lineage2.2.1.1 | 4 |
| lineage4.9 | 3 |
| lineage4.8 | 12 |
| 4 | |
| lineage4.3.4.2 | 1 |
| lineage1.1.2 | 5 |
| lineage4.6.2.2 | 1 |
| lineage1.1.3.1 | 1 |
| lineage4.2.1 | 4 |
| lineage4.1 | 1 |
| lineage4.1.1.2;lineage4.7 | 1 |
| lineage4.2.2 | 1 |
| lineage4.4.1.1 | 1 |
| lineage1.1.1 | 1 |
| lineage2.2.2 | 1 |
| lineage1.1.2;lineage2.2.1;lineage4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 116 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR29017199 | XDR-TB | lineage4.1.1.1 | None | ERR9119275 | HR-TB | lineage4.1.2 | None | ERR13439852 | HR-TB | lineage1.1.1.1;lineage2.2.1 | None | SRR3085270 | MDR-TB | lineage2.2.1 | None | SRR28646076 | MDR-TB | lineage4.1.2.1 | None | SRR12420339 | Sensitive | lineage4.5 | None | ERR7737829 | MDR-TB | lineage3.1.1 | None | SRR28868769 | Sensitive | lineage1.1.1.1 | None | SRR15368819 | Sensitive | lineage2.2.1 | None | SRR10305649 | Pre-XDR-TB | lineage2.2.1 | None | ERR13285613 | Sensitive | lineage3 | None | SRR29539239 | XDR-TB | lineage2.2.1 | None | SRR25206855 | RR-TB | lineage2.2.1.1 | None | DRR473739 | Sensitive | lineage4.9 | None | SRR21690197 | Sensitive | lineage4.8 | None | ERR4553932 | Pre-XDR-TB | None | ERR4553894 | XDR-TB | None | ERR4553863 | Pre-XDR-TB | None | ERR4830244 | HR-TB | lineage4.1.2 | vn | ERR4830338 | HR-TB | lineage2.2.1 | vn | ERR9119293 | HR-TB | lineage2.2.1 | None | SRR2101411 | Sensitive | lineage2.2.1 | None | ERR1465864 | RR-TB | lineage4.8 | None | SRR6824407 | Pre-XDR-TB | lineage2.2.1 | cn | SRR29017586 | Pre-XDR-TB | lineage4.1.1.1 | None | SRR29093897 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR5065211 | Sensitive | lineage1.1.1.1 | vn | SRR5073900 | HR-TB | lineage2.2.1 | vn | SRR10305982 | Pre-XDR-TB | lineage2.2.1 | None | ERR4827992 | MDR-TB | lineage2.2.1 | None | SRR25515090 | MDR-TB | lineage4.5 | None | SRR25206885 | RR-TB | lineage2.2.1.1 | None | SRR18548987 | Sensitive | lineage4.5 | None | SRR4423149 | Pre-XDR-TB | lineage4.1.1.1 | None | ERR11252592 | Sensitive | lineage4.8 | None | ERR9896099 | Sensitive | lineage1.1.2 | None | ERR552906 | MDR-TB | lineage2.2.1 | None | SRR6357001 | Pre-XDR-TB | lineage2.2.1 | None | SRR11972352 | MDR-TB | lineage2.2.1.1 | None | SRR25515476 | Sensitive | lineage2.2.1 | None | SRR29017204 | Pre-XDR-TB | lineage4.1.1.1 | None | SRR10040134 | MDR-TB | lineage2.2.1 | None | SRR29881213 | Sensitive | lineage4.6.2.2 | None | SRR6896558 | Sensitive | lineage2.2.1 | None | ERR13265894 | Sensitive | lineage2.2.1 | None | SRR27069386 | Pre-XDR-TB | lineage2.2.1 | None | SRR17406745 | Sensitive | lineage1.1.2 | None | SRR12882709 | Sensitive | lineage3.1.1 | None | SRR15014654 | MDR-TB | lineage1.1.2 | None | SRR21690232 | Sensitive | lineage3 | None | SRR20970027 | Pre-XDR-TB | lineage2.2.1 | None | ERR4827735 | MDR-TB | lineage2.2.1 | None | ERR4798520 | Sensitive | lineage3 | in | ERR13252936 | Sensitive | lineage4.9 | None | SRR29385511 | XDR-TB | lineage2.2.1 | None | SRR671774 | Pre-XDR-TB | lineage4.5 | cn | ERR11775737 | Sensitive | lineage4.8 | None | ERR718327 | HR-TB | lineage1.1.3.1 | th | ERR4553879 | MDR-TB | None | SRR11662506 | MDR-TB | lineage2.2.1 | None | SRR5153857 | MDR-TB | lineage4.2.1 | None | ERR4814554 | Sensitive | lineage4.1 | None | ERR4831734 | HR-TB | lineage1.1.1.1;lineage2.2.1 | vn | SRR12416841 | MDR-TB | lineage2.2.1 | None | ERR11082741 | MDR-TB | lineage2.2.1 | None | SRR28859799 | Other | lineage4.1.1.2;lineage4.7 | None | SRR14801621 | Sensitive | lineage4.8 | None | ERR552076 | Sensitive | lineage1.1.2 | de | SRR2100408 | Sensitive | lineage4.1.1.1 | None | ERR7911229 | MDR-TB | lineage4.2.1 | md | ERR230005 | MDR-TB | lineage2.2.1 | ru | ERR2199903 | RR-TB | lineage4.8 | de | SRR6824701 | MDR-TB | lineage2.2.1 | cn | SRR12882256 | Sensitive | lineage3 | None | ERR11082139 | MDR-TB | lineage2.2.1 | None | ERR4553917 | MDR-TB | lineage4.1.1.1 | None | ERR2179735 | RR-TB | lineage4.2.2 | cn | SRR6484971 | HR-TB | lineage2.2.1 | None | SRR7341654 | Pre-XDR-TB | lineage4.4.1.1 | ro | SRR24222942 | Sensitive | lineage4.1.2.1 | None | ERR552909 | MDR-TB | lineage2.2.1 | None | SRR26399449 | HR-TB | lineage4.1.2 | None | SRR1723552 | Pre-XDR-TB | lineage2.2.1 | cn | SRR1723773 | Sensitive | lineage2.2.1 | cn | ERR4828007 | MDR-TB | lineage2.2.1 | None | SRR7653025 | Pre-XDR-TB | lineage2.2.1 | None | ERR13284025 | MDR-TB | lineage2.2.1 | None | SRR7516434 | RR-TB | lineage4.8 | None | ERR4195302 | Sensitive | lineage4.2.1 | None | ERR550666 | RR-TB | lineage4.8 | None | SRR29356644 | Sensitive | lineage4.1.2.1 | None | ERR9121662 | Sensitive | lineage4.2.1 | None | ERR4830123 | MDR-TB | lineage2.2.1 | None | DRR189097 | Sensitive | lineage4.9 | None | SRR28046118 | Other | lineage3 | None | ERR4811492 | RR-TB | lineage2.2.1.1 | cn | ERR4827718 | Sensitive | lineage2.2.1 | None | ERR2884662 | Sensitive | lineage4.8 | es | SRR5709992 | MDR-TB | lineage2.2.1 | th | SRR6339645 | MDR-TB | lineage2.2.1 | au | SRR21690361 | Sensitive | lineage3 | None | ERR13285643 | Sensitive | lineage4.8 | None | ERR10679991 | MDR-TB | lineage1.1.1 | None | SRR10380193 | Sensitive | lineage4.8 | None | SRR28045084 | Sensitive | lineage1.1.2 | None | ERR11043963 | Sensitive | lineage4.5 | None | SRR26399420 | HR-TB | lineage2.2.1 | None | SRR671769 | Pre-XDR-TB | lineage4.5 | cn | SRR21277370 | Sensitive | lineage4.5 | None | ERR13243511 | Pre-XDR-TB | lineage2.2.2 | None | SRR1723448 | MDR-TB | lineage2.2.1 | cn | SRR6458407 | MDR-TB | lineage2.2.1 | None | ERR9121406 | Sensitive | lineage4.8 | None | ERR13284480 | MDR-TB | lineage2.2.1 | None | SRR25827768 | XDR-TB | lineage1.1.2;lineage2.2.1;lineage4 | None | SRR29017631 | Pre-XDR-TB | lineage4.1.1.1 | None |
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