lineage | Count |
---|---|
lineage2.2.1 | 41 |
lineage2.2.1.1 | 8 |
lineage4.4.1.2 | 1 |
lineage4.3.2 | 12 |
lineage4.3.3 | 2 |
lineage3 | 4 |
lineage4.1.3 | 6 |
lineage1.2.1.2 | 1 |
lineage2.2.2 | 6 |
lineage4.1.1.1 | 6 |
lineage3.1.2 | 1 |
lineage2.1 | 3 |
lineage2.2.1;lineage3.1.2.1 | 1 |
lineage2.2.1.2 | 5 |
lineage4.2.2 | 2 |
lineage2.2.1;lineage4.1.2.1 | 1 |
lineage4.4.2 | 4 |
lineage4.1.2.1 | 6 |
lineage4.5 | 4 |
lineage6.2.2 | 1 |
lineage4.8 | 1 |
lineage4.3.4.1 | 5 |
lineage3.1.2.1 | 2 |
lineage4.1.2 | 1 |
lineage1.2.2.2 | 1 |
lineage4.6.1.2 | 1 |
lineage4.4.1.1 | 1 |
lineage4.2.2.1 | 1 |
lineage1.2.1.2.1 | 1 |
spoligotype | Count |
---|---|
None | 129 |
ID | Drug resistance | Lineage | Country iso2 |
---|---|---|---|
SRR25534415 | Pre-XDR-TB | lineage2.2.1 | None |
SRR21277167 | MDR-TB | lineage2.2.1.1 | None |
ERR4829863 | MDR-TB | lineage4.4.1.2 | it |
ERR9029860 | MDR-TB | lineage4.3.2 | None |
ERR9907790 | MDR-TB | lineage4.3.2 | None |
SRR19320515 | RR-TB | lineage4.3.3 | None |
SRR6964603 | MDR-TB | lineage3 | None |
ERR9907788 | MDR-TB | lineage4.3.2 | None |
SRR998837 | MDR-TB | lineage4.1.3 | None |
SRR30180221 | MDR-TB | lineage1.2.1.2 | None |
SRR10040173 | MDR-TB | lineage2.2.2 | None |
SRR1172215 | MDR-TB | lineage4.1.1.1 | None |
SRR12142429 | MDR-TB | lineage2.2.1 | None |
ERR9907784 | MDR-TB | lineage4.3.2 | None |
ERR2679314 | MDR-TB | lineage4.1.3 | None |
ERR2510256 | Pre-XDR-TB | lineage3 | pk |
ERR13191095 | Pre-XDR-TB | lineage2.2.2 | None |
ERR2510544 | MDR-TB | lineage3.1.2 | pk |
SRR5817473 | MDR-TB | lineage2.1 | au |
SRR10040231 | MDR-TB | lineage2.2.1 | None |
SRR11662132 | MDR-TB | lineage2.2.1 | None |
SRR25827502 | Pre-XDR-TB | lineage2.2.1;lineage3.1.2.1 | None |
SRR15506901 | MDR-TB | lineage2.2.1.2 | None |
SRR26937119 | Pre-XDR-TB | lineage2.2.1 | None |
ERR3275774 | MDR-TB | lineage4.2.2 | nl |
SAMEA5569651 | MDR-TB | lineage4.3.2 | None |
ERR015616 | Pre-XDR-TB | lineage2.2.1 | ru |
SRR8651591 | MDR-TB | lineage2.2.1.1 | cn |
SRR16088240 | MDR-TB | lineage2.2.1;lineage4.1.2.1 | None |
SRR12420630 | MDR-TB | lineage4.4.2 | None |
ERR4830595 | MDR-TB | lineage2.2.1 | tm |
SRR10185947 | MDR-TB | lineage2.2.1 | None |
ERR4831617 | MDR-TB | lineage2.2.1 | None |
SRR27069378 | MDR-TB | lineage2.2.1.1 | None |
ERR13244684 | MDR-TB | lineage2.2.1 | None |
SRR6930899 | Pre-XDR-TB | lineage2.2.1 | None |
SRR22536494 | MDR-TB | lineage4.1.2.1 | None |
SRR30180228 | MDR-TB | lineage4.4.2 | None |
ERR11082706 | MDR-TB | lineage2.1 | None |
SRR12420672 | MDR-TB | lineage2.2.2 | None |
SRR29052719 | RR-TB | lineage4.3.3 | None |
SRR998838 | MDR-TB | lineage4.1.3 | None |
ERR13291014 | MDR-TB | lineage4.5 | None |
ERR9907758 | MDR-TB | lineage4.3.2 | None |
SRR1169196 | MDR-TB | lineage4.1.1.1 | None |
ERR1034856 | MDR-TB | lineage2.2.1 | pt |
SRR28046331 | Pre-XDR-TB | lineage3 | None |
ERR4828070 | MDR-TB | lineage2.2.1 | None |
ERR4810486 | Pre-XDR-TB | lineage2.2.1 | cn |
ERR2516917 | MDR-TB | lineage2.2.1.2 | gb |
ERR10680134 | MDR-TB | lineage6.2.2 | None |
SRR29094414 | XDR-TB | lineage4.8 | None |
ERR9907709 | MDR-TB | lineage4.3.4.1 | None |
ERR9907766 | MDR-TB | lineage4.3.4.1 | None |
SRR1172974 | RR-TB | lineage2.2.1 | None |
SRR11972450 | MDR-TB | lineage2.2.1 | None |
ERR13285056 | MDR-TB | lineage4.1.2.1 | None |
DRR130112 | MDR-TB | lineage2.2.1 | None |
ERR11082097 | MDR-TB | lineage4.1.2.1 | None |
SRR6824658 | MDR-TB | lineage2.2.1 | cn |
ERR1035224 | MDR-TB | lineage2.2.1 | pt |
SRR21277654 | Pre-XDR-TB | lineage2.2.1.1 | None |
ERR751934 | RR-TB | lineage2.2.1 | th |
SRR22873608 | Pre-XDR-TB | lineage2.2.2 | None |
SRR27069456 | MDR-TB | lineage2.2.1.1 | None |
SRR2024916 | MDR-TB | lineage2.2.1 | cn |
SRR10040486 | MDR-TB | lineage2.2.1 | None |
SRR1184394 | RR-TB | lineage2.2.1 | None |
SRR1167340 | MDR-TB | lineage4.1.1.1 | None |
ERR9907668 | MDR-TB | lineage4.3.2 | None |
SRR15465768 | MDR-TB | lineage2.2.1.2 | None |
SRR20969549 | MDR-TB | lineage2.2.2 | None |
SRR25514993 | Pre-XDR-TB | lineage2.2.1 | None |
ERR2517097 | MDR-TB | lineage2.2.1.2 | gb |
SRR12420407 | MDR-TB | lineage4.4.2 | None |
SRR11662644 | MDR-TB | lineage2.2.1.1 | None |
SRR25827597 | Pre-XDR-TB | lineage3.1.2.1 | None |
ERR4829486 | Pre-XDR-TB | lineage4.1.2 | it |
SRR22536483 | MDR-TB | lineage4.1.2.1 | None |
ERR3287458 | MDR-TB | lineage4.3.2 | None |
ERR4810963 | MDR-TB | lineage2.2.1 | cn |
ERR4798772 | Pre-XDR-TB | lineage1.2.2.2 | in |
SRR998839 | MDR-TB | lineage4.1.3 | None |
ERR13258502 | MDR-TB | lineage2.2.1 | None |
ERR9907717 | MDR-TB | lineage4.3.4.1 | None |
ERR9907787 | Pre-XDR-TB | lineage4.3.4.1 | None |
SRR25207249 | MDR-TB | lineage2.2.1 | None |
SRR1165656 | MDR-TB | lineage4.1.1.1 | None |
ERR13273356 | MDR-TB | lineage2.2.1 | None |
SRR21277604 | MDR-TB | lineage2.2.2 | None |
ERR9907782 | MDR-TB | lineage4.3.2 | None |
ERR9907767 | MDR-TB | lineage4.3.2 | None |
SRR25207149 | Pre-XDR-TB | lineage4.5 | None |
SRR29093847 | MDR-TB | lineage4.6.1.2 | None |
ERR4828822 | MDR-TB | lineage2.2.1.1 | None |
SRR20969770 | Pre-XDR-TB | lineage2.2.1 | None |
ERR9907779 | MDR-TB | lineage4.3.2 | None |
SRR29274289 | RR-TB | lineage4.4.1.1 | None |
SRR1723594 | MDR-TB | lineage2.2.1 | cn |
SRR1723454 | Pre-XDR-TB | lineage2.2.1 | cn |
ERR4553487 | RR-TB | lineage3.1.2.1 | None |
SRR26936940 | MDR-TB | lineage2.2.1 | None |
SAMN02231187 | MDR-TB | lineage4.1.3 | None |
SRR20969663 | MDR-TB | lineage2.1 | None |
SRR6485101 | Pre-XDR-TB | lineage2.2.1 | None |
ERR11465792 | MDR-TB | lineage4.3.2 | None |
ERR4832006 | MDR-TB | lineage2.2.1 | vn |
SRR25207095 | MDR-TB | lineage4.5 | None |
SRR22528546 | MDR-TB | lineage4.1.2.1 | None |
SRR16149133 | MDR-TB | lineage4.2.2.1 | None |
ERR2516935 | MDR-TB | lineage2.2.1.2 | gb |
SAMN02403610 | MDR-TB | lineage4.1.1.1 | None |
SRR6964672 | Pre-XDR-TB | lineage3 | None |
ERR11775970 | MDR-TB | lineage1.2.1.2.1 | None |
SRR27069448 | Pre-XDR-TB | lineage2.2.1.1 | None |
SRR25206965 | Pre-XDR-TB | lineage2.2.1 | None |
SRR998840 | MDR-TB | lineage4.1.3 | None |
ERR275216 | MDR-TB | lineage2.2.1 | pt |
SRR29273642 | RR-TB | lineage4.1.2.1 | None |
SRR21690907 | MDR-TB | lineage4.2.2 | None |
SRR12420507 | MDR-TB | lineage4.4.2 | None |
ERR9907693 | MDR-TB | lineage4.3.4.1 | None |
SRR1196702 | RR-TB | lineage2.2.1 | None |
SAMN02586096 | RR-TB | lineage2.2.1 | za |
ERR4810472 | MDR-TB | lineage4.5 | cn |
SRR1169145 | MDR-TB | lineage4.1.1.1 | None |
SRR5894883 | Pre-XDR-TB | lineage2.2.1 | None |
SRR1175072 | RR-TB | lineage2.2.1 | None |
SRR6824356 | Pre-XDR-TB | lineage2.2.1 | cn |