SRR29538906
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13312541
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13284681
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR114457
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13260682
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR18213905
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25827490
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR11082361
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR2100950
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25827446
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR5863530
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28045843
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2179767
|
RR-TB
|
lineage4.5
|
cn
|
SRR7069827
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3287732
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR25515068
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25827397
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR9119609
|
MDR-TB
|
lineage4.6.2.2
|
None
|
SRR7516386
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR12142377
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR18002927
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR2099969
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR26937121
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16088490
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13284161
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR114514
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4798054
|
MDR-TB
|
lineage1.2.2.2
|
in
|
ERR13260639
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR23340089
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23340032
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4812743
|
MDR-TB
|
lineage4.1.1
|
pe
|
SRR1723621
|
RR-TB
|
lineage2.2.1
|
None
|
ERR3639811
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR23340083
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7657755
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2706927
|
RR-TB
|
lineage1.1.3.1;lineage4.7
|
cd
|
ERR7737857
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4811638
|
RR-TB
|
lineage2.2.1
|
cn
|
ERR2677405
|
Pre-XDR-TB
|
lineage2.2.1
|
de
|
SRR1144787
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR867548
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR12142363
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4831611
|
Pre-XDR-TB
|
lineage2.2.1
|
vn
|
ERR5863050
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR21576654
|
RR-TB
|
lineage2.2.1
|
None
|
ERR3287712
|
Pre-XDR-TB
|
lineage4.1.1
|
pe
|
SRR29681361
|
MDR-TB
|
lineage4.8
|
None
|
SRR25515114
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02053788
|
MDR-TB
|
lineage2.2.1
|
za
|
ERR2512591
|
MDR-TB
|
lineage2.2.1
|
gb
|
SRR23340065
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29231505
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR550895
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10397223
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR278569
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5551764
|
MDR-TB
|
lineage2.2.1.1
|
pg
|
ERR867540
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29050881
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR13583357
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR7516385
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29051058
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR2027265
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR2024993
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR29050871
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR2513835
|
MDR-TB
|
lineage2.2.1
|
gb
|
SRR7516396
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13258443
|
RR-TB
|
lineage2.2.1
|
None
|
SRR20969762
|
Pre-XDR-TB
|
lineage4.4.2
|
None
|
ERR13260931
|
MDR-TB
|
lineage3
|
None
|
ERR13260667
|
Pre-XDR-TB
|
lineage4.1.1
|
None
|
ERR11082570
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9027235
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR2024899
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SRR25515446
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4813361
|
Pre-XDR-TB
|
lineage4.1.1
|
None
|
ERR11081705
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16088170
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13284542
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13195354
|
MDR-TB
|
lineage2.2.2
|
None
|
SAMN03246362
|
RR-TB
|
lineage2.2.1
|
cn
|
SRR7516291
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR12790842
|
RR-TB
|
lineage2.2.1
|
None
|
SRR25827547
|
XDR-TB
|
lineage2.2.1;lineage3.1.2
|
None
|
SRR9971248
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11083033
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4872215
|
MDR-TB
|
lineage4.6.2.2
|
None
|
SRR23340033
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23340037
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25515327
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02398700
|
Pre-XDR-TB
|
lineage2.2.1
|
kr
|
ERR5865636
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1723620
|
RR-TB
|
lineage2.2.1
|
None
|
ERR4796542
|
Pre-XDR-TB
|
lineage4.2.2.2
|
in
|
ERR4797173
|
Pre-XDR-TB
|
lineage4.2.2.2
|
in
|
SRR25515570
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4872101
|
MDR-TB
|
lineage4.1.4
|
None
|
ERR4798824
|
MDR-TB
|
lineage4.8
|
in
|
SRR10315461
|
RR-TB
|
lineage4.3.2.1
|
None
|
SRR29016881
|
MDR-TB
|
lineage4
|
None
|
DRR130062
|
RR-TB
|
lineage2.2.1
|
None
|
ERR4553568
|
MDR-TB
|
lineage4
|
None
|
ERR11050223
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR833133
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4799677
|
Pre-XDR-TB
|
lineage4.2.2.2
|
None
|
ERR2512419
|
MDR-TB
|
lineage2.2.1
|
gb
|
SRR29050863
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR6824521
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR7069279
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13583463
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR2517053
|
MDR-TB
|
lineage2.2.1
|
gb
|
ERR4024916
|
MDR-TB
|
lineage4.1.1
|
None
|
SRR25515575
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16588743
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7069990
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11080926
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR6824450
|
RR-TB
|
lineage2.2.1
|
cn
|
SRR25515404
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR867526
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR833010
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9119532
|
MDR-TB
|
lineage4.6.2.2
|
None
|
ERR386928
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13583462
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR25515338
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4798243
|
XDR-TB
|
lineage2.2.1
|
in
|
SRR25827513
|
XDR-TB
|
lineage2.2.1;lineage3
|
None
|
ERR2515585
|
Pre-XDR-TB
|
lineage4.9.1
|
za
|
SRR8758887
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR13312540
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9119507
|
MDR-TB
|
lineage4.1.4
|
None
|
ERR2041743
|
MDR-TB
|
lineage2.2.1
|
rs
|
ERR2510232
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR4811284
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR28239722
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25827562
|
XDR-TB
|
lineage2.2.1;lineage4.2.2.2
|
None
|
ERR5863535
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13261615
|
Pre-XDR-TB
|
lineage4.1.1
|
None
|
SRR13312543
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28240007
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR12142334
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865374
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR20632811
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25515222
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR21798458
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR15368986
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR550895_ERR550894
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2516880
|
MDR-TB
|
lineage2.2.1
|
gb
|
SRR25207074
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7516387
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR21277848
|
MDR-TB
|
lineage2.2.1.2
|
None
|
ERR13261939
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4024571
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR3287438
|
Pre-XDR-TB
|
lineage4.1.2.1
|
pe
|
ERR4831066
|
MDR-TB
|
lineage2.2.1
|
np
|
ERR4830520
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR6865544
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR4799239
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR25827357
|
XDR-TB
|
lineage1.1.2;lineage2.2.1;lineage3
|
None
|
ERR3639785
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4813642
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR29231568
|
RR-TB
|
lineage1.1.3.1;lineage4.7
|
None
|
SRR29539729
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4872126
|
MDR-TB
|
lineage4.6.2.2
|
None
|
ERR10225516
|
MDR-TB
|
lineage1.1.2
|
None
|
SRR21277291
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2510439
|
MDR-TB
|
lineage3
|
pk
|
SRR25515744
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11773759
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797003
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR5865376
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2517002
|
MDR-TB
|
lineage3.1.2.1
|
gb
|
ERR5865377
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR22424856
|
MDR-TB
|
lineage3.1.2
|
None
|
SRR3544728
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR775358
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR15014755
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9027237
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2516927
|
MDR-TB
|
lineage2.2.1
|
gb
|
SRR24710179
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11082941
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13276427
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29772622
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25515572
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR3105766
|
Pre-XDR-TB
|
lineage1.1.2
|
None
|
SAMN02053789
|
MDR-TB
|
lineage2.2.1
|
za
|
ERR11050171
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR21733246
|
RR-TB
|
lineage3.1.2
|
None
|
ERR2516854
|
MDR-TB
|
lineage2.2.1
|
gb
|
ERR9027234
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2513572
|
MDR-TB
|
lineage2.2.1
|
gb
|
ERR2515747
|
Pre-XDR-TB
|
lineage4.1.1.3
|
za
|
SRR6832208
|
RR-TB
|
lineage4.8
|
None
|
ERR5865375
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25515721
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7516384
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13312542
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR23862061
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR15600345
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR28706577
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25515631
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29539289
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13286031
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR6866031
|
MDR-TB
|
lineage4.1.1
|
None
|
ERR13267048
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR833169
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4799363
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR867536
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2516882
|
MDR-TB
|
lineage2.2.1
|
gb
|
SRR2100387
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28860207
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7069759
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2513564
|
MDR-TB
|
lineage2.2.1
|
gb
|
ERR2516979
|
MDR-TB
|
lineage2.2.1
|
gb
|
ERR11050224
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR270679
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13232412
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMEA2533547
|
MDR-TB
|
lineage2.2.1
|
uz
|
SRR15316075
|
MDR-TB
|
lineage2.2.1.2
|
None
|
ERR13290810
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR117737
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5863529
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797815
|
MDR-TB
|
lineage1.2.2.2
|
in
|
ERR13266437
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR833021
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24256303
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4815069
|
MDR-TB
|
lineage2.2.1
|
gb
|
SRR2100306
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13284186
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR25207253
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR550894
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7516380
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25515886
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23340131
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865637
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5153812
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR987710
|
MDR-TB
|
lineage4.8
|
None
|
SRR25827733
|
Pre-XDR-TB
|
lineage3;lineage4.2.2.2
|
None
|
ERR13290783
|
RR-TB
|
lineage2.2.1
|
None
|
SRR28044621
|
Pre-XDR-TB
|
lineage4.8
|
None
|