lineage | Count |
---|---|
lineage4.4.2 | 1 |
lineage2.2.1 | 103 |
lineage2.2.1.2 | 2 |
lineage3.1.2 | 1 |
lineage4.3.4.2 | 4 |
lineage1.1.2 | 2 |
lineage4.1.1 | 5 |
lineage4.3.3 | 7 |
lineage4.3.4.2.1 | 1 |
lineage4.1.2 | 1 |
lineage3 | 1 |
lineage4.1.1.3 | 1 |
lineage4.5 | 1 |
lineage4.9.1 | 1 |
lineage3.1.2.1 | 1 |
lineage2.2.1.1 | 2 |
lineage2.2 | 9 |
lineage4.7;lineage1.1.3.1 | 1 |
lineage4.8 | 3 |
lineage4.1.4 | 2 |
lineage4.6.2.2 | 4 |
lineage4.1.2.1 | 1 |
lineage4.2.2.2 | 3 |
lineage4 | 1 |
lineage1.2.2.2 | 2 |
lineage4.3.2.1 | 1 |
spoligotype | Count |
---|---|
None | 161 |
ID | Drug resistance | Lineage | Country iso2 | SRR20969762 | Pre-XDR-TB | lineage4.4.2 | None | SRR20632811 | Pre-XDR-TB | lineage2.2.1 | None | SRR2100387 | MDR-TB | lineage2.2.1 | None | SRR2099969 | MDR-TB | lineage2.2.1 | None | SRR2100306 | MDR-TB | lineage2.2.1 | None | SRR2100950 | MDR-TB | lineage2.2.1 | None | SRR21277291 | Pre-XDR-TB | lineage2.2.1 | None | ERR11082361 | Pre-XDR-TB | lineage2.2.1 | None | SRR21277848 | MDR-TB | lineage2.2.1.2 | None | SRR21576654 | RR-TB | lineage2.2.1 | None | SRR22424856 | RR-TB | lineage3.1.2 | None | ERR11081705 | MDR-TB | lineage2.2.1 | None | ERR11080926 | MDR-TB | lineage4.3.4.2 | None | ERR11082570 | Pre-XDR-TB | lineage2.2.1 | None | ERR11083033 | MDR-TB | lineage2.2.1 | None | ERR11082941 | MDR-TB | lineage2.2.1 | None | SRR23862061 | MDR-TB | lineage2.2.1 | None | SRR3105766 | Pre-XDR-TB | lineage1.1.2 | None | ERR4812743 | MDR-TB | lineage4.1.1 | pe | SRR3544728 | Pre-XDR-TB | lineage2.2.1 | None | SAMN03246362 | RR-TB | lineage2.2.1 | cn | ERR4813361 | Pre-XDR-TB | lineage4.1.1 | None | ERR2677405 | Pre-XDR-TB | lineage2.2.1 | de | SAMN02398700 | Pre-XDR-TB | lineage2.2.1 | kr | ERR4815069 | MDR-TB | lineage2.2.1 | gb | ERR4813642 | MDR-TB | lineage4.3.3 | None | SRR1723877 | MDR-TB | lineage2.2.1 | cn | ERR2027265 | MDR-TB | lineage2.2.1 | None | ERR2041743 | MDR-TB | lineage2.2.1 | rs | ERR551231 | MDR-TB | lineage4.3.4.2.1 | sz | SAMN02053788 | MDR-TB | lineage2.2.1 | za | SRR4035719 | MDR-TB | lineage4.1.2 | None | ERR2513572 | MDR-TB | lineage2.2.1 | gb | ERR2510439 | MDR-TB | lineage3 | pk | ERR2513564 | MDR-TB | lineage2.2.1 | gb | ERR2512419 | MDR-TB | lineage2.2.1 | gb | ERR2512591 | MDR-TB | lineage2.2.1 | gb | ERR2510232 | MDR-TB | lineage4.3.3 | pe | ERR2513835 | MDR-TB | lineage2.2.1 | gb | ERR2517053 | MDR-TB | lineage2.2.1 | gb | SRR5153812 | Pre-XDR-TB | lineage2.2.1 | None | ERR2515747 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR2179767 | RR-TB | lineage4.5 | cn | ERR2516927 | MDR-TB | lineage2.2.1 | gb | ERR2515585 | Pre-XDR-TB | lineage4.9.1 | za | ERR2516979 | MDR-TB | lineage2.2.1 | gb | ERR2517002 | MDR-TB | lineage3.1.2.1 | gb | ERR2516880 | MDR-TB | lineage2.2.1 | gb | ERR2516854 | MDR-TB | lineage2.2.1 | gb | ERR278569 | MDR-TB | lineage2.2.1 | None | ERR2516882 | MDR-TB | lineage2.2.1 | gb | ERR270679 | MDR-TB | lineage2.2.1 | None | SRR5551764 | MDR-TB | lineage2.2.1.1 | pg | ERR4831066 | MDR-TB | lineage2.2.1 | np | SRR23340032 | MDR-TB | lineage2.2 | None | SRR23340033 | MDR-TB | lineage2.2 | None | SRR23340065 | MDR-TB | lineage2.2 | None | SRR23340089 | MDR-TB | lineage2.2 | None | SRR23340131 | MDR-TB | lineage2.2 | None | SRR23340037 | MDR-TB | lineage2.2 | None | SRR23340083 | MDR-TB | lineage2.2 | None | ERR2706927 | RR-TB | lineage4.7;lineage1.1.3.1 | cd | SAMN02053789 | MDR-TB | lineage2.2.1 | za | ERR4830520 | MDR-TB | lineage2.2.1 | None | SRR6832208 | RR-TB | lineage4.8 | None | ERR4872101 | MDR-TB | lineage4.1.4 | None | ERR4872126 | MDR-TB | lineage4.6.2.2 | None | ERR4831611 | Pre-XDR-TB | lineage2.2.1 | vn | ERR4872215 | MDR-TB | lineage4.6.2.2 | None | SRR6824521 | MDR-TB | lineage2.2.1 | cn | SRR6824450 | RR-TB | lineage2.2.1 | cn | SRR7516291 | Pre-XDR-TB | lineage2.2.1 | None | SRR9971248 | MDR-TB | lineage2.2.1 | None | SRR7516385 | Pre-XDR-TB | lineage2.2.1 | None | SRR833021 | MDR-TB | lineage2.2.1 | None | SRR7516380 | Pre-XDR-TB | lineage2.2.1 | None | SRR833010 | MDR-TB | lineage2.2.1 | None | SRR7516384 | Pre-XDR-TB | lineage2.2.1 | None | SRR833169 | MDR-TB | lineage2.2.1 | None | SRR7516386 | Pre-XDR-TB | lineage2.2.1 | None | SRR7516396 | Pre-XDR-TB | lineage2.2.1 | None | SRR833133 | MDR-TB | lineage2.2.1 | None | SRR7516387 | Pre-XDR-TB | lineage2.2.1 | None | SRR7657755 | MDR-TB | lineage2.2.1 | None | SAMEA2533547 | MDR-TB | lineage2.2.1 | uz | SRR2024993 | MDR-TB | lineage2.2.1 | cn | DRR130062 | RR-TB | lineage2.2.1 | None | SRR2024899 | Pre-XDR-TB | lineage2.2.1 | cn | ERR3287438 | Pre-XDR-TB | lineage4.1.2.1 | pe | ERR10225516 | MDR-TB | lineage1.1.2 | None | ERR019552 | MDR-TB | lineage2.2 | None | ERR114457 | MDR-TB | lineage2.2.1 | None | ERR114514 | MDR-TB | lineage2.2.1 | None | ERR117737 | MDR-TB | lineage2.2.1 | None | ERR3287712 | Pre-XDR-TB | lineage4.1.1 | pe | ERR3639811 | MDR-TB | lineage4.3.4.2 | None | ERR3287732 | MDR-TB | lineage4.3.3 | pe | ERR3639785 | Pre-XDR-TB | lineage2.2.1 | None | ERR4024916 | MDR-TB | lineage4.1.1 | None | ERR386928 | MDR-TB | lineage2.2.1 | None | ERR4024571 | MDR-TB | lineage4.3.4.2 | None | ERR4796542 | Pre-XDR-TB | lineage4.2.2.2 | in | ERR4553568 | MDR-TB | lineage4 | None | ERR4797173 | Pre-XDR-TB | lineage4.2.2.2 | in | ERR4797003 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797503 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798054 | MDR-TB | lineage1.2.2.2 | in | ERR4797815 | MDR-TB | lineage1.2.2.2 | in | ERR4811284 | MDR-TB | lineage2.2.1 | cn | ERR4798243 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798824 | MDR-TB | lineage4.8 | in | ERR4799239 | MDR-TB | lineage2.2.1 | in | ERR4799363 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799677 | Pre-XDR-TB | lineage4.2.2.2 | None | ERR5863051 | Pre-XDR-TB | lineage2.2.1 | None | ERR4811638 | RR-TB | lineage2.2.1 | cn | ERR5865376 | Pre-XDR-TB | lineage2.2.1 | None | ERR5863529 | Pre-XDR-TB | lineage2.2 | None | ERR5863535 | Pre-XDR-TB | lineage2.2.1 | None | ERR5863050 | Pre-XDR-TB | lineage2.2.1 | None | ERR5863530 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865374 | Pre-XDR-TB | lineage2.2.1 | None | ERR775358 | MDR-TB | lineage4.3.3 | pe | ERR5865377 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865636 | MDR-TB | lineage2.2.1 | None | ERR5865637 | MDR-TB | lineage2.2.1 | None | ERR6865544 | MDR-TB | lineage4.3.4.2 | None | ERR6866031 | MDR-TB | lineage4.1.1 | None | ERR5865375 | Pre-XDR-TB | lineage2.2.1 | None | ERR7737857 | MDR-TB | lineage2.2.1 | None | ERR9027234 | Pre-XDR-TB | lineage2.2.1 | None | ERR9027235 | Pre-XDR-TB | lineage2.2.1 | None | ERR9027237 | MDR-TB | lineage2.2.1 | None | ERR987710 | MDR-TB | lineage4.8 | None | ERR9119507 | MDR-TB | lineage4.1.4 | None | ERR9119532 | MDR-TB | lineage4.6.2.2 | None | ERR9119609 | MDR-TB | lineage4.6.2.2 | None | ERR11050224 | MDR-TB | lineage2.2.1 | None | ERR11050171 | MDR-TB | lineage2.2.1 | None | ERR11050223 | MDR-TB | lineage2.2.1 | None | SRR10315461 | RR-TB | lineage4.3.2.1 | None | SRR10397223 | Pre-XDR-TB | lineage2.2.1 | None | SRR13232412 | MDR-TB | lineage2.2.1 | None | SRR1144787 | Pre-XDR-TB | lineage2.2.1 | None | SRR12142334 | Pre-XDR-TB | lineage2.2.1 | None | SRR12142377 | Pre-XDR-TB | lineage2.2.1 | None | SRR12142363 | Pre-XDR-TB | lineage2.2.1 | None | SRR13312543 | Pre-XDR-TB | lineage2.2.1 | None | SRR13312541 | Pre-XDR-TB | lineage2.2.1 | None | SRR15014755 | Pre-XDR-TB | lineage2.2.1 | None | SRR13312540 | Pre-XDR-TB | lineage2.2.1 | None | SRR13312542 | Pre-XDR-TB | lineage2.2.1 | None | SRR13583357 | MDR-TB | lineage4.3.3 | None | SRR13583462 | MDR-TB | lineage4.3.3 | None | SRR13583463 | MDR-TB | lineage4.3.3 | None | SRR15600345 | MDR-TB | lineage2.2.1.1 | None | SRR15316075 | MDR-TB | lineage2.2.1.2 | None | SRR15368986 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002927 | XDR-TB | lineage2.2.1 | None | SRR16588743 | MDR-TB | lineage2.2.1 | None | SRR18213905 | MDR-TB | lineage2.2.1 | None |
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