SRR13120434
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10748379
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865535
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14781842
|
HR-TB
|
lineage2.2.1
|
None
|
ERR7911653
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR3340710
|
MDR-TB
|
lineage2.2.1;lineage4.1.1.3
|
za
|
SRR29093840
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29093269
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7911664
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR8665633
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665672
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1159204
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29273909
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR4011086
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13260532
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR26937060
|
RR-TB
|
lineage2.2.1
|
None
|
ERR4830107
|
MDR-TB
|
lineage2.2.1
|
tj
|
ERR9119607
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR4799633
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR2446459
|
MDR-TB
|
lineage2.2.1
|
nl
|
SRR13232399
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865306
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR2024992
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR4831584
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28393277
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR11068853
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13266817
|
Pre-XDR-TB
|
lineage3.1
|
None
|
ERR4798935
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR5987420
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1181125
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8025543
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5987223
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4813854
|
RR-TB
|
lineage4.3.2
|
br
|
SRR29093636
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8025598
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9993206
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1167387
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR13290935
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR8665765
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7911615
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR11774992
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR6362360
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2041781
|
MDR-TB
|
lineage2.2.1
|
rs
|
ERR551919
|
MDR-TB
|
lineage4.8
|
None
|
SRR29096629
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29273748
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR13288954
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR8025706
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29538871
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR29539587
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10748502
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7911619
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
SRR10397109
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11082656
|
MDR-TB
|
lineage4.3.4.1
|
None
|
ERR9992829
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16370516
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4831536
|
XDR-TB
|
lineage2.2.1
|
None
|
SAMN02419574
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
ERR4798638
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR16156802
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4423530
|
Other
|
lineage2.2.1
|
None
|
SRR29096974
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13286098
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25206907
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4896313
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796701
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR28044336
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR13232551
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8025420
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10112885
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR27107242
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13290991
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR11349179
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4797228
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR7517690
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR978257
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10748307
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02419550
|
MDR-TB
|
lineage2.2.1
|
by
|
ERR5865918
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4872218
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR9119515
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR13232521
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1163022
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR789234
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR1184039
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6789624
|
HR-TB
|
lineage4.1.1.3
|
None
|
SRR25827520
|
MDR-TB
|
lineage3.1
|
None
|
SAMN02403605
|
MDR-TB
|
lineage4.3.3
|
za
|
SRR16156819
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4011063
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR6361948
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665988
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR11775013
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9119984
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13273259
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6356977
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4822555
|
MDR-TB
|
lineage2.2.1
|
ua
|
ERR8665634
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11081072
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR10748564
|
MDR-TB
|
lineage2.2.1;lineage4.3.4.2
|
None
|
SRR10869153
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16156799
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10112836
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5866524
|
Other
|
lineage2.2.1
|
None
|
SRR29055555
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665745
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13283995
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16156733
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25206888
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR3287804
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR4011075
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1169206
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR13276235
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR13286097
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR551239
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29096499
|
MDR-TB
|
lineage2.2.1;lineage4.2.2.2
|
None
|
SRR29096862
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR22175258
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5866116
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665850
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551919_ERR551918
|
MDR-TB
|
lineage4.8
|
None
|
SRR1163303
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13180240
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13232575
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8774342
|
RR-TB
|
lineage4.1.1.1
|
None
|
ERR9993214
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16156263
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665975
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8025608
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865053
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR21576603
|
MDR-TB
|
lineage1.2.1.2
|
None
|
ERR4797459
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR1172071
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR3743500
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11044141
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR4832049
|
MDR-TB
|
lineage2.1
|
vn
|
SRR13232668
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2041783
|
Pre-XDR-TB
|
lineage2.2.1
|
rs
|
ERR7911526
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR1023465
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16088163
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13276376
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02419582
|
MDR-TB
|
lineage2.2.1
|
by
|
SRR29016848
|
MDR-TB
|
lineage3.1
|
None
|
SRR27107253
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10748429
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR1034638
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9119531
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR11043693
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR29096855
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9907747
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SAMEA2534002
|
MDR-TB
|
lineage2.2.1
|
uz
|
SRR1162504
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7131183
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5067704
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR17658004
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1873562
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR9120058
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10748533
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR29093656
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR5153930
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4872213
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR2677403
|
MDR-TB
|
lineage2.2.1
|
de
|
ERR10748443
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9992676
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13289317
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR552002
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13232694
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28435000
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093134
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29094026
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093757
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29096298
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9993142
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093563
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7341700
|
MDR-TB
|
lineage4.1.2.1
|
ro
|
ERR8665593
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1181151
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13232717
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR10748349
|
MDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
SRR27107249
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551528_ERR551527
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13290787
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4276866
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093247
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24256298
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR8975808
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR6052108
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6458438
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1873556
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
SRR10869058
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8773611
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552001
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9119612
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR2510693
|
Pre-XDR-TB
|
lineage2.2.1
|
it
|
SRR21576716
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SAMN02419641
|
MDR-TB
|
lineage2.2.1
|
by
|
SRR11662240
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4796385
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR8774343
|
RR-TB
|
lineage4.1.1.1
|
None
|
ERR4798542
|
Pre-XDR-TB
|
lineage3.1
|
in
|
SRR12420476
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4830988
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR11773825
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093533
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4011065
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827822
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR8377831
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13288994
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR1063841
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9992778
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR6362094
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5987424
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1169119
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665651
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR833211
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4813119
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3132179
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665985
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8773609
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866369
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7592381
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR10869096
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16156798
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2515250
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
SRR29093527
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10869232
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093802
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093827
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13284317
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4423581
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5987226
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7911548
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR8665907
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8975714
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8025440
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13286117
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6914121
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1034637
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR6662372
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR1873447
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
SRR25207201
|
RR-TB
|
lineage2.2.1
|
None
|
ERR4822284
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4553626
|
MDR-TB
|
lineage3.1
|
None
|
SRR29093506
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093431
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093583
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR8758881
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10748328
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29093854
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29093562
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4423690
|
RR-TB
|
lineage4.1.1.1
|
None
|
ERR4872125
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SAMEA2534290
|
MDR-TB
|
lineage4.8
|
uz
|
ERR4812313
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR5486870
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR8665637
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR21747022
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR8773985
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9119950
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2515650
|
MDR-TB
|
lineage2.2.1
|
za
|
SRR10315709
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10869142
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4872109
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR1023224
|
MDR-TB
|
lineage5.1.2
|
None
|
SRR1159338
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11067638
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29056274
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16156777
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665503
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1166916
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5987422
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8025615
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR21747061
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR13284243
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13285242
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10748114
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.8.1
|
None
|
ERR8665552
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR551074
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24256039
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR8237323
|
MDR-TB
|
lineage2.2.1
|
np
|
ERR1034644
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9992782
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9119956
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02419604
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SRR6458407
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13232660
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8699802
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866370
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2510694
|
Pre-XDR-TB
|
lineage2.2.1
|
it
|
ERR789238
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR9029851
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR29096519
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29096612
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR17657952
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10112834
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9806879
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16156844
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR958495
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10315708
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24466754
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR1163332
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29017581
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29273651
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR29273977
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR25827867
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5987378
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4831535
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR7911579
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.3.3
|
za
|
ERR10748337
|
MDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
ERR4872249
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR553237
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4797148
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR5864240
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR551918
|
MDR-TB
|
lineage4.8
|
None
|
ERR8665638
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR552786
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR978256
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR6362178
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7911553
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR8665530
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665551
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9119957
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR21747052
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR551527
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24256375
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10748327
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11774909
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4829041
|
Pre-XDR-TB
|
lineage2.2.1
|
it
|
SRR6896472
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR6052081
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4829823
|
Pre-XDR-TB
|
lineage2.2.1
|
it
|
ERR4011058
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29093413
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02419634
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
ERR9119641
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR29274121
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR29274179
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR3132175
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2510849
|
Pre-XDR-TB
|
lineage2.2.1
|
it
|
ERR13284578
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR10748557
|
MDR-TB
|
lineage2.2.1;lineage4.3.2.1
|
None
|
SRR13232522
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13291116
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR13286137
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR13290718
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR14782743
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11243552
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR1873432
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9120059
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29094075
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093666
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865051
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7911557
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR10748240
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093263
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29093606
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5987419
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13260579
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1163202
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093462
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29096596
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29093628
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1169033
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16087906
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9119876
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR067674
|
Pre-XDR-TB
|
lineage2.2.1
|
ru
|
ERR10748152
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10748382
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02419611
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SRR13232524
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR22175189
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5917746
|
MDR-TB
|
lineage2.2.1
|
by
|
ERR5987456
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6257019
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6356959
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13232577
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1011496
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR16156280
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR3085252
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10112888
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7911542
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
SRR13232719
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865307
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29539592
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866115
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10748314
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10748508
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR27107292
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8975012
|
MDR-TB
|
lineage4.7
|
None
|
ERR7911076
|
MDR-TB
|
lineage2.2.1
|
za
|
ERR8665986
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR15901697
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665556
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665764
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665880
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR13232673
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665671
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232731
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR18715357
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR21277279
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6257072
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665839
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9120158
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR21747027
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR24256196
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10748133
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10748528
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10748534
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9806955
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9807039
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11773813
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR789239
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1172250
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR2024938
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR4796447
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR8975031
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1172082
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR7592374
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR13276251
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2515371
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR4011061
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6785386
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13232689
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13286149
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29093617
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5866371
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9992618
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665757
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797561
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR5758354
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16088252
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11033731
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9806878
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1162971
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232776
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665993
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665974
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10748288
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29096310
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10748444
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29096372
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29273943
|
MDR-TB
|
lineage4.8
|
None
|
SRR16156830
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4011066
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7911539
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR7911652
|
MDR-TB
|
lineage2.2.1
|
za
|
SRR30180231
|
MDR-TB
|
lineage1.2.1.2
|
None
|
ERR7911547
|
Pre-XDR-TB
|
lineage2.2.1;lineage2.2.2
|
za
|
SRR6458397
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865917
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR6362157
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR2101373
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR13232785
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11044249
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR25827390
|
Pre-XDR-TB
|
lineage2.2.1.2
|
None
|
ERR13290814
|
HR-TB
|
lineage2.2.1;lineage2.2.2
|
None
|
SRR29096398
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29056303
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1172152
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR16088417
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10748566
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR6866995
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR1165682
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR5866161
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1169063
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10748116
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10748299
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMEA5569998
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR29093655
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29273604
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR28706648
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865052
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5987300
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827635
|
Pre-XDR-TB
|
lineage2.2.1.1;lineage3
|
None
|
ERR13290726
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR13290833
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR29539656
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29539595
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11243550
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29539332
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4799366
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4800161
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR10397161
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR5153826
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29094081
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29056131
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29274101
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR4831242
|
MDR-TB
|
lineage4.1.2.1
|
de
|
SRR29096839
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1873474
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR8665809
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665884
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1180958
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1181158
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11972302
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR789236
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR8665906
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232415
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13232733
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02403604
|
MDR-TB
|
lineage4.3.3
|
za
|
SRR9738526
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR5864239
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29096347
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665610
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665756
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11774911
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR29273885
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR4810843
|
RR-TB
|
lineage2.2.1
|
cn
|
SRR10869162
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29096352
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4553887
|
MDR-TB
|
lineage4
|
None
|
SRR23340079
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8025760
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10112905
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29094002
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13285063
|
MDR-TB
|
lineage4.3.4.1
|
None
|
SRR29385408
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9992832
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10869209
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1158890
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5917697
|
MDR-TB
|
lineage2.2.1
|
by
|
ERR8665848
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1159877
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8975774
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1181135
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11081512
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865050
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9119983
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9993221
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR2510341
|
Pre-XDR-TB
|
lineage3
|
pk
|
SAMN02086224
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13276303
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4553497
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8686567
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4810926
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR4799551
|
Pre-XDR-TB
|
lineage3.1
|
None
|
ERR4011057
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29096216
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29096668
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1169001
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232728
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7911611
|
XDR-TB
|
lineage2.2.1
|
za
|
ERR4799985
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR8665504
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR5007183
|
MDR-TB
|
lineage4.3.4.1
|
None
|
ERR8665744
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2517548
|
MDR-TB
|
lineage2.2.1
|
nl
|
SRR29096772
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10869276
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1169131
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1181157
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8025622
|
HR-TB
|
lineage2.2.1
|
None
|
ERR11773815
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11465549
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR29056325
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28706547
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351279
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1159175
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28393253
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR25827854
|
Pre-XDR-TB
|
lineage2.2.1.2;lineage3
|
None
|
ERR11775630
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11774959
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR23311018
|
HR-TB
|
lineage2.2.1
|
None
|
ERR2516910
|
MDR-TB
|
lineage2.2.1
|
gb
|
ERR4800201
|
Pre-XDR-TB
|
lineage3.1
|
in
|
ERR13288928
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13289043
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29681467
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8025609
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11774978
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9806940
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29096487
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29055874
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4553976
|
Pre-XDR-TB
|
lineage3.1
|
None
|
SRR1169113
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR9971350
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23310911
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4011051
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865534
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5987357
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02419545
|
MDR-TB
|
lineage2.2.1
|
by
|
SRR25206996
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR25827439
|
XDR-TB
|
lineage2.2.1.2;lineage3.1.2.1
|
None
|
SRR25827651
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR13260562
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR13290948
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR13290744
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR13290816
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR5758371
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9119830
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10397204
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4423582
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4423691
|
RR-TB
|
lineage4.1.1.1
|
None
|
ERR11044928
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR21685367
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29093596
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13289403
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR29055544
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29017611
|
Pre-XDR-TB
|
lineage4
|
None
|
ERR4553491
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13266711
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8025497
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29096489
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13232663
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13232732
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR12115317
|
MDR-TB
|
lineage5.1.2
|
None
|
ERR13284692
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29681216
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29539622
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10748436
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28498377
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4011077
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1165661
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR924716
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8025545
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8025569
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865919
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4011076
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13291001
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR5866162
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1166283
|
MDR-TB
|
lineage4.1.2.1
|
ro
|
ERR1873410
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1172144
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1873560
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25206887
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR9119951
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29093816
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3275447
|
MDR-TB
|
lineage2.2.1
|
nl
|
ERR5866160
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10748559
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13266960
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9992978
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8025496
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10869280
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13285243
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11068740
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29096827
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10748560
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10748562
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2515488
|
MDR-TB
|
lineage2.2.1
|
za
|
ERR551528
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9030318
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16156774
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29274131
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR8025626
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1873509
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR4829277
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10525337
|
MDR-TB
|
lineage4.8
|
None
|
SRR10868966
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13289329
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11081321
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR1180922
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7911423
|
MDR-TB
|
lineage2.2.1
|
us
|
SRR29096799
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR21277286
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11774908
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR10748531
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25207252
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28646062
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR4797871
|
Pre-XDR-TB
|
lineage3.1
|
in
|
ERR13290990
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR29539016
|
HR-TB
|
lineage2.2.1
|
None
|
ERR9806938
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11033668
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3639695
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665562
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665652
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29056083
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093846
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093765
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR29055799
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2660450
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4812994
|
Pre-XDR-TB
|
lineage4.1.1
|
None
|
ERR7362009
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10868981
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1163392
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6339661
|
MDR-TB
|
lineage4.3.3
|
au
|
SRR29096484
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11774833
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29093807
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02419643
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SRR10430390
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10869258
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1165710
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1159361
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1159369
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1163415
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799767
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR29096952
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093140
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093584
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13266413
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29096597
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29096513
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29093392
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29055532
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29056093
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29056088
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR21576539
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR21576619
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR13260563
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR29055581
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13290742
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR25827714
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR11774913
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR27107254
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9119801
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9120159
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29093730
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29273957
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR9119875
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1172345
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10869094
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11043260
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29056110
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29093270
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29096321
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29096947
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13290992
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR8665822
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10748099
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13290815
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13291129
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR13290701
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3794525
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29093548
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR21576706
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR11465548
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR789237
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR789235
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR1873470
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR4813143
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093421
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16370531
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9119713
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11044488
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR29096354
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6257007
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR11043518
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29055573
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16088323
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|