lineage | Count |
---|---|
lineage4.3.3 | 20 |
lineage2.1 | 32 |
lineage2.2.1 | 48 |
lineage4.2.2.2 | 3 |
lineage4.1.2.1 | 8 |
lineage4.8 | 1 |
lineage4.4.1.1 | 1 |
lineage2.2.1.1 | 3 |
lineage3 | 1 |
lineage4.1.1 | 1 |
lineage4.1.2.1.1 | 1 |
lineage1.2.1.2.1 | 1 |
spoligotype | Count |
---|---|
None | 120 |
ID | Drug resistance | Lineage | Country iso2 | ERR2516570 | Pre-XDR-TB | lineage4.3.3 | pe | SRR1180403 | Pre-XDR-TB | lineage4.3.3 | None | SRR28741101 | MDR-TB | lineage2.1 | None | SRR21747020 | MDR-TB | lineage2.1 | None | SRR28741097 | Pre-XDR-TB | lineage2.1 | None | SRR29538962 | MDR-TB | lineage2.2.1 | None | SRR9971280 | MDR-TB | lineage4.3.3 | None | SRR1144787 | Pre-XDR-TB | lineage2.2.1 | None | ERR13291023 | MDR-TB | lineage2.1 | None | ERR1873555 | Pre-XDR-TB | lineage2.2.1 | None | SRR13423593 | Pre-XDR-TB | lineage2.2.1 | None | ERR2517379 | MDR-TB | lineage4.2.2.2 | nl | SRR29539604 | MDR-TB | lineage2.2.1 | None | SRR29539422 | MDR-TB | lineage2.2.1 | None | SRR30180243 | MDR-TB | lineage2.1 | None | SRR28741104 | MDR-TB | lineage2.1 | None | SRR29539500 | MDR-TB | lineage2.2.1 | None | SRR833149 | MDR-TB | lineage4.3.3 | None | SRR10726045 | MDR-TB | lineage4.3.3 | None | ERR2516014 | Pre-XDR-TB | lineage2.2.1 | za | ERR7911198 | MDR-TB | lineage4.3.3 | za | SRR1180328 | Pre-XDR-TB | lineage4.3.3 | None | SRR1181321 | Pre-XDR-TB | lineage4.3.3 | None | ERR13285093 | MDR-TB | lineage4.1.2.1 | None | ERR7911612 | Pre-XDR-TB | lineage2.2.1 | za | SRR6256999 | MDR-TB | lineage4.1.2.1 | None | ERR2516455 | Pre-XDR-TB | lineage4.3.3 | pe | SRR29440605 | MDR-TB | lineage2.2.1 | None | SRR29538883 | MDR-TB | lineage2.2.1 | None | SRR28741100 | MDR-TB | lineage2.1 | None | SRR28741112 | MDR-TB | lineage2.1 | None | SRR28741113 | MDR-TB | lineage2.1 | None | SRR28741116 | MDR-TB | lineage2.1 | None | SRR29539165 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539378 | MDR-TB | lineage2.2.1 | None | SRR28741107 | MDR-TB | lineage2.1 | None | SRR28741102 | MDR-TB | lineage2.1 | None | SRR28741108 | MDR-TB | lineage2.1 | None | SAMN02398700 | Pre-XDR-TB | lineage2.2.1 | kr | SRR11349133 | MDR-TB | lineage4.3.3 | None | SRR28741111 | MDR-TB | lineage2.1 | None | ERR10748090 | Pre-XDR-TB | lineage2.2.1 | None | ERR10748123 | Pre-XDR-TB | lineage2.2.1 | None | ERR3148042 | MDR-TB | lineage4.1.2.1 | None | SRR25395684 | MDR-TB | lineage2.2.1 | None | SRR29539244 | MDR-TB | lineage2.2.1 | None | SRR29539727 | Pre-XDR-TB | lineage2.2.1 | None | ERR13292515 | Pre-XDR-TB | lineage2.2.1 | None | SRR28741105 | MDR-TB | lineage2.1 | None | ERR9120119 | Pre-XDR-TB | lineage2.2.1 | None | SRR20969769 | RR-TB | lineage2.2.1 | None | SRR29681440 | MDR-TB | lineage2.2.1 | None | ERR9120025 | Pre-XDR-TB | lineage2.2.1 | None | SRR28741114 | MDR-TB | lineage2.1 | None | SRR21746995 | MDR-TB | lineage2.1 | None | SRR9738549 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR29539375 | Pre-XDR-TB | lineage2.2.1 | None | SRR24255982 | Pre-XDR-TB | lineage2.2.1 | None | ERR11138655 | Pre-XDR-TB | lineage4.8 | None | ERR4828992 | MDR-TB | lineage4.4.1.1 | None | SRR24255940 | MDR-TB | lineage2.2.1 | None | SRR11342641 | MDR-TB | lineage4.3.3 | None | ERR9120024 | Pre-XDR-TB | lineage2.2.1 | None | ERR1034681 | MDR-TB | lineage4.1.2.1 | co | SRR15600357 | MDR-TB | lineage2.2.1.1 | None | SRR28394043 | Pre-XDR-TB | lineage4.3.3 | None | SRR29539402 | MDR-TB | lineage2.2.1 | None | SRR29539468 | MDR-TB | lineage2.2.1 | None | SRR29681475 | MDR-TB | lineage2.2.1 | None | SRR28741106 | MDR-TB | lineage2.1 | None | SRR28741109 | MDR-TB | lineage2.1 | None | SRR28741117 | MDR-TB | lineage2.1 | None | SRR30180222 | MDR-TB | lineage2.1 | None | SRR30180344 | MDR-TB | lineage2.1 | None | SRR30180323 | MDR-TB | lineage2.1 | None | ERR2446468 | MDR-TB | lineage4.2.2.2 | nl | ERR5987457 | Pre-XDR-TB | lineage2.2.1 | None | ERR5987427 | Pre-XDR-TB | lineage2.2.1 | None | ERR6362010 | MDR-TB | lineage2.2.1.1 | None | SRR13180268 | MDR-TB | lineage3 | None | SRR28741118 | MDR-TB | lineage2.1 | None | ERR2600456 | MDR-TB | lineage2.2.1 | None | ERR7911444 | MDR-TB | lineage4.3.3 | za | ERR10748083 | Pre-XDR-TB | lineage2.2.1 | None | SRR11342640 | MDR-TB | lineage4.3.3 | None | ERR10748493 | Pre-XDR-TB | lineage2.2.1 | None | ERR4553994 | MDR-TB | lineage4.1.1 | None | ERR2516619 | Pre-XDR-TB | lineage4.3.3 | pe | SRR29539076 | MDR-TB | lineage2.2.1 | None | ERR13290687 | MDR-TB | lineage2.1 | None | SRR29273981 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR13290981 | MDR-TB | lineage2.1 | None | SRR28741119 | MDR-TB | lineage2.1 | None | SRR21747057 | MDR-TB | lineage2.1 | None | ERR9119793 | MDR-TB | lineage2.2.1.1 | None | SRR29273938 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR11342667 | MDR-TB | lineage4.3.3 | None | ERR4195285 | MDR-TB | lineage4.1.2.1 | None | ERR760848 | MDR-TB | lineage4.1.2.1.1 | ar | SRR28858669 | MDR-TB | lineage1.2.1.2.1 | None | ERR4831563 | Pre-XDR-TB | lineage2.2.1 | None | SRR1181260 | Pre-XDR-TB | lineage4.3.3 | None | ERR3275385 | MDR-TB | lineage4.2.2.2 | nl | ERR10748191 | Pre-XDR-TB | lineage2.2.1 | None | ERR10748361 | Pre-XDR-TB | lineage2.2.1 | None | SRR833067 | MDR-TB | lineage4.3.3 | None | SRR29539032 | MDR-TB | lineage2.2.1 | None | SRR6832352 | MDR-TB | lineage2.2.1 | None | SRR27069437 | MDR-TB | lineage2.2.1 | None | SRR28741098 | MDR-TB | lineage2.1 | None | SRR28741103 | MDR-TB | lineage2.1 | None | SRR28741115 | MDR-TB | lineage2.1 | None | SRR29681315 | Pre-XDR-TB | lineage2.2.1 | None | SRR29681368 | MDR-TB | lineage2.2.1 | None | SRR20970062 | MDR-TB | lineage2.2.1 | None | SAMN02053741 | MDR-TB | lineage4.3.3 | za | SRR11342666 | MDR-TB | lineage4.3.3 | None | SRR6930888 | RR-TB | lineage2.2.1 | None | SRR21747054 | Pre-XDR-TB | lineage2.1 | None | SRR29385284 | MDR-TB | lineage2.2.1 | None |
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