Rv0668 - p.Pro1040Ala
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
2 RR-TB
3 HR-TB
231 MDR-TB
53 Pre-XDR-TB
0 XDR-TB
0 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 15 |
| lineage4.3.3 | 217 |
| lineage4.6.2.2 | 8 |
| lineage4.2.2.1 | 3 |
| lineage4.2.1.1 | 1 |
| lineage4.1.2.1;lineage4.3.3 | 2 |
| lineage3 | 3 |
| lineage4 | 8 |
| lineage4.8 | 5 |
| lineage4.1.2.1 | 4 |
| lineage4.7 | 7 |
| lineage4.5 | 4 |
| lineage1.2.1.2.1 | 1 |
| lineage4.1.1.3 | 3 |
| lineage3.1.2.1 | 2 |
| lineage4.1.2.1.1 | 1 |
| lineage1.1;lineage2.2.1 | 1 |
| lineage4.1 | 1 |
| lineage4.3.3;lineage4.3.4.2 | 1 |
| lineage4.3.2;lineage4.3.3 | 1 |
| lineage4.1.4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 289 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6384968 | Pre-XDR-TB | lineage2.2.1 | None | SRR29094407 | MDR-TB | lineage4.3.3 | None | SRR28393763 | MDR-TB | lineage4.3.3 | None | SRR3732641 | MDR-TB | lineage4.3.3 | None | ERR4813592 | MDR-TB | lineage4.3.3 | None | ERR13261907 | MDR-TB | lineage4.3.3 | None | ERR9992759 | Pre-XDR-TB | lineage2.2.1 | None | ERR4872232 | MDR-TB | lineage4.6.2.2 | None | ERR13261642 | MDR-TB | lineage4.3.3 | None | ERR4813640 | MDR-TB | lineage4.3.3 | None | SRR28393931 | MDR-TB | lineage4.3.3 | None | ERR13284347 | MDR-TB | lineage4.2.2.1 | None | SRR28858731 | MDR-TB | lineage4.3.3 | None | ERR6866590 | MDR-TB | lineage4.3.3 | None | SRR16370497 | Pre-XDR-TB | lineage4.3.3 | None | SRR6384969 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261912 | MDR-TB | lineage4.3.3 | None | SRR24256311 | MDR-TB | lineage4.2.1.1 | None | ERR4812750 | MDR-TB | lineage4.3.3 | None | SRR28393497 | MDR-TB | lineage4.3.3 | None | SRR28393953 | MDR-TB | lineage4.3.3 | None | ERR13260679 | MDR-TB | lineage4.3.3 | None | ERR13261611 | MDR-TB | lineage4.1.2.1;lineage4.3.3 | None | ERR4799798 | Pre-XDR-TB | lineage3 | in | ERR4799428 | MDR-TB | lineage3 | in | ERR4811853 | MDR-TB | lineage4.3.3 | pe | ERR4811963 | MDR-TB | lineage4.3.3 | pe | ERR4812165 | MDR-TB | lineage4.3.3 | pe | ERR10748572 | Pre-XDR-TB | lineage2.2.1 | None | ERR2184212 | MDR-TB | lineage4.3.3 | pe | ERR2184424 | MDR-TB | lineage4.3.3 | pe | SRR22461583 | MDR-TB | lineage4.3.3 | None | SRR28393894 | MDR-TB | lineage4.3.3 | None | ERR751377 | MDR-TB | lineage4.3.3 | pe | SRR28393459 | MDR-TB | lineage4.3.3 | None | ERR775332 | MDR-TB | lineage4.3.3 | pe | ERR7910846 | MDR-TB | lineage4.3.3 | pe | ERR7910883 | MDR-TB | lineage4.3.3 | pe | SRR22461602 | Pre-XDR-TB | lineage4.3.3 | None | SRR28393770 | MDR-TB | lineage4.3.3 | None | ERR4812888 | MDR-TB | lineage4.3.3 | pe | ERR775310 | MDR-TB | lineage4.3.3 | pe | ERR775337 | MDR-TB | lineage4.3.3 | pe | ERR751562 | Pre-XDR-TB | lineage4.3.3 | pe | ERR4813411 | MDR-TB | lineage4.3.3 | pe | ERR751578 | MDR-TB | lineage4.3.3 | pe | ERR751362 | MDR-TB | lineage4.3.3 | pe | ERR751406 | MDR-TB | lineage4.3.3 | pe | SRR28706375 | HR-TB | lineage4.3.3 | None | SRR3732651 | MDR-TB | lineage4.3.3 | None | ERR9029867 | Pre-XDR-TB | lineage4 | None | SRR7517771 | MDR-TB | lineage4.3.3 | None | ERR2516503 | Pre-XDR-TB | lineage4 | pe | ERR2516650 | Pre-XDR-TB | lineage4 | pe | ERR11069002 | MDR-TB | lineage4.2.2.1 | None | SRR22461678 | MDR-TB | lineage4.3.3 | None | ERR11043345 | MDR-TB | lineage4.3.3 | None | SRR7517768 | MDR-TB | lineage4.3.3 | pe | ERR2653134 | Pre-XDR-TB | lineage4.8 | None | ERR11081787 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR22461642 | MDR-TB | lineage4.3.3 | None | ERR6865374 | MDR-TB | lineage4.3.3 | None | SRR16370487 | Pre-XDR-TB | lineage4.3.3 | None | SRR15661607 | MDR-TB | lineage4.8 | None | ERR4812115 | MDR-TB | lineage4.3.3 | None | ERR13260207 | MDR-TB | lineage4.3.3 | None | ERR2653116 | Pre-XDR-TB | lineage4.8 | None | SRR12420423 | RR-TB | lineage2.2.1 | None | SRR29273865 | MDR-TB | lineage4.7 | None | ERR4813028 | MDR-TB | lineage4.3.3 | pe | ERR4813074 | MDR-TB | lineage4.3.3 | pe | SRR29273851 | MDR-TB | lineage4.7 | None | SRR10828642 | MDR-TB | lineage4.5 | None | ERR12117937 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR3256179 | HR-TB | lineage1.2.1.2.1 | ph | ERR9119539 | MDR-TB | lineage4.6.2.2 | None | ERR13260184 | MDR-TB | lineage4.3.3 | None | SRR22461599 | MDR-TB | lineage4.3.3 | None | ERR5865446 | MDR-TB | lineage4.3.3 | None | ERR13276319 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR3276176 | MDR-TB | lineage4.3.3 | nl | ERR4813721 | MDR-TB | lineage4.3.3 | None | ERR4813589 | MDR-TB | lineage4.3.3 | None | SRR28393596 | MDR-TB | lineage4.3.3 | None | SRR20969899 | MDR-TB | lineage2.2.1 | None | ERR13260526 | Pre-XDR-TB | lineage4.3.3 | None | ERR13260404 | MDR-TB | lineage4.3.3 | None | SRR29081667 | MDR-TB | lineage4.3.3 | None | ERR13260105 | MDR-TB | lineage4.3.3 | None | ERR13261941 | Pre-XDR-TB | lineage4.3.3 | None | ERR13261651 | MDR-TB | lineage4.3.3 | None | ERR4813313 | MDR-TB | lineage4.3.3 | None | ERR13261909 | MDR-TB | lineage4.3.3 | None | ERR7911355 | MDR-TB | lineage4.3.3 | None | ERR13260415 | MDR-TB | lineage4.3.3 | None | ERR7911354 | MDR-TB | lineage4.3.3 | None | SRR16058703 | MDR-TB | lineage4.1.1.3 | None | SRR6930910 | MDR-TB | lineage4.1.1.3 | None | ERR4872172 | MDR-TB | lineage4.6.2.2 | None | ERR3287449 | Pre-XDR-TB | lineage4 | None | ERR13267443 | MDR-TB | lineage4.3.3 | None | ERR6865900 | MDR-TB | lineage4.3.3 | None | ERR13261946 | MDR-TB | lineage4.3.3 | None | ERR13284283 | MDR-TB | lineage4.3.3 | None | ERR13260108 | MDR-TB | lineage4.3.3 | None | ERR4813550 | MDR-TB | lineage4.3.3 | None | ERR4813680 | MDR-TB | lineage4.3.3 | None | SRR16370510 | MDR-TB | lineage4.3.3 | None | SRR29093323 | Pre-XDR-TB | lineage2.2.1 | None | SRR16915747 | MDR-TB | lineage4.3.3 | None | ERR987708 | MDR-TB | lineage3 | None | SRR10808592 | MDR-TB | lineage4.3.3 | None | ERR10748161 | Pre-XDR-TB | lineage2.2.1 | None | SRR13870396 | MDR-TB | lineage4.3.3 | None | ERR4813677 | MDR-TB | lineage4.3.3 | None | ERR4799128 | Pre-XDR-TB | lineage3.1.2.1 | in | ERR13260531 | Pre-XDR-TB | lineage4.3.3 | None | SRR29094386 | MDR-TB | lineage4.1.2.1.1 | None | ERR13260700 | MDR-TB | lineage4.3.3 | None | SRR3732650 | MDR-TB | lineage4.3.3 | None | ERR4872099 | MDR-TB | lineage4.6.2.2 | None | ERR4812970 | Pre-XDR-TB | lineage4.3.3 | pe | ERR9124904 | MDR-TB | lineage4.1.1.3 | None | ERR12118004 | MDR-TB | lineage4.3.3 | None | ERR13260136 | MDR-TB | lineage4.3.3 | None | SRR28393413 | MDR-TB | lineage4.3.3 | None | ERR4813377 | MDR-TB | lineage4.3.3 | None | ERR4813380 | MDR-TB | lineage4.3.3 | pe | ERR4813415 | MDR-TB | lineage4.3.3 | pe | ERR4813458 | MDR-TB | lineage4.3.3 | pe | ERR2864274 | MDR-TB | lineage4.7 | pt | ERR2864282 | MDR-TB | lineage4.7 | pt | ERR4813475 | Pre-XDR-TB | lineage4.3.3 | pe | ERR2652997 | Pre-XDR-TB | lineage4.8 | None | ERR2184437 | MDR-TB | lineage4.3.3 | pe | SRR28393782 | Pre-XDR-TB | lineage4.3.3 | None | ERR3287428 | MDR-TB | lineage4.3.3 | pe | SRR28393776 | MDR-TB | lineage4.3.3 | None | ERR3287864 | MDR-TB | lineage4 | pe | ERR4812476 | MDR-TB | lineage4.3.3 | pe | ERR3287347 | MDR-TB | lineage4.3.3 | pe | SRR22461577 | MDR-TB | lineage4.3.3 | None | SRR22461653 | MDR-TB | lineage4.3.3 | None | ERR4812854 | MDR-TB | lineage4.3.3 | pe | ERR4812855 | MDR-TB | lineage4.3.3 | pe | ERR4812892 | MDR-TB | lineage4.3.3 | pe | ERR4812898 | MDR-TB | lineage4.3.3 | pe | SRR28393576 | MDR-TB | lineage4.3.3 | None | ERR4812961 | MDR-TB | lineage4.3.3 | pe | ERR4813071 | MDR-TB | lineage4.3.3 | pe | SRR28393428 | MDR-TB | lineage4.3.3 | None | SRR28393452 | MDR-TB | lineage4.3.3 | None | ERR7910862 | MDR-TB | lineage4.3.3 | pe | SRR28393457 | MDR-TB | lineage4.3.3 | None | ERR7911003 | MDR-TB | lineage4.3.3 | pe | ERR7911345 | MDR-TB | lineage4.3.3 | pe | ERR4811827 | MDR-TB | lineage4.3.3 | None | ERR751435 | MDR-TB | lineage4.3.3 | pe | ERR4813450 | MDR-TB | lineage4.1.2.1;lineage4.3.3 | pe | ERR4831634 | HR-TB | lineage1.1;lineage2.2.1 | vn | ERR4812890 | MDR-TB | lineage4.3.3 | pe | ERR4812924 | MDR-TB | lineage4.3.3 | pe | ERR4813159 | Pre-XDR-TB | lineage4.3.3 | pe | ERR4813356 | MDR-TB | lineage4.3.3 | pe | ERR10680146 | MDR-TB | lineage4.1 | None | SRR16370475 | MDR-TB | lineage4.3.3 | None | ERR10748368 | Pre-XDR-TB | lineage2.2.1 | None | ERR1034897 | MDR-TB | lineage4.2.2.1 | pt | SRR29094433 | MDR-TB | lineage4.3.3 | None | ERR10748197 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865445 | MDR-TB | lineage4.3.3 | None | ERR4178303 | MDR-TB | lineage4.3.3 | None | ERR4813622 | MDR-TB | lineage4.3.3 | None | ERR4813661 | MDR-TB | lineage4.3.3 | None | SRR22461643 | Pre-XDR-TB | lineage4.3.3 | None | SRR21576576 | MDR-TB | lineage4.5 | None | SRR21691030 | MDR-TB | lineage4.3.3 | None | ERR3287346 | MDR-TB | lineage4.3.3 | None | ERR4813618 | MDR-TB | lineage4.3.3 | None | ERR4813599 | MDR-TB | lineage4.3.3;lineage4.3.4.2 | None | SRR16370470 | MDR-TB | lineage4.3.3 | None | SRR29273922 | MDR-TB | lineage4.7 | None | ERR1035013 | Pre-XDR-TB | lineage2.2.1 | za | SRR3732582 | MDR-TB | lineage4.3.3 | None | SAMEA5569642 | Pre-XDR-TB | lineage4 | None | ERR13260660 | MDR-TB | lineage4.3.3 | None | ERR13261643 | MDR-TB | lineage4.3.3 | None | SRR22461693 | MDR-TB | lineage4.3.3 | None | SRR26937125 | MDR-TB | lineage2.2.1 | None | ERR4812675 | MDR-TB | lineage4.3.3 | None | ERR9119570 | MDR-TB | lineage4.6.2.2 | None | ERR13260556 | MDR-TB | lineage4.3.3 | None | ERR13260406 | MDR-TB | lineage4.3.3 | None | ERR4813710 | MDR-TB | lineage4.3.3 | None | ERR10748492 | Pre-XDR-TB | lineage2.2.1 | None | ERR13260435 | MDR-TB | lineage4.3.3 | None | ERR13261644 | MDR-TB | lineage4.3.3 | None | ERR4872133 | MDR-TB | lineage4.6.2.2 | None | SRR13870375 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR13260704 | MDR-TB | lineage4.3.3 | None | ERR2653132 | Pre-XDR-TB | lineage4.8 | None | ERR5865443 | MDR-TB | lineage4.3.3 | None | SRR28393435 | MDR-TB | lineage4.3.3 | None | ERR4813581 | MDR-TB | lineage4.3.3 | None | SRR10808436 | MDR-TB | lineage4.3.3 | None | ERR4813624 | MDR-TB | lineage4.3.3 | None | ERR13260654 | MDR-TB | lineage4.3.3 | None | SRR25827751 | Pre-XDR-TB | lineage4.3.3 | None | ERR11050243 | MDR-TB | lineage4.3.3 | None | ERR13260699 | MDR-TB | lineage4.3.3 | None | ERR4813730 | MDR-TB | lineage4.3.3 | None | ERR13260395 | MDR-TB | lineage4.3.3 | None | ERR13261592 | MDR-TB | lineage4.3.3 | None | ERR13260389 | MDR-TB | lineage4.3.3 | None | SRR16370498 | MDR-TB | lineage4.3.3 | None | ERR4813320 | MDR-TB | lineage4.3.3 | None | ERR4813326 | MDR-TB | lineage4.3.3 | pe | ERR2184500 | MDR-TB | lineage4.3.3 | pe | ERR3287412 | MDR-TB | lineage4.3.3 | pe | ERR4812081 | MDR-TB | lineage4.3.3 | None | SRR28393536 | MDR-TB | lineage4.3.3 | None | ERR3287429 | Pre-XDR-TB | lineage4.3.3 | pe | ERR3287437 | Pre-XDR-TB | lineage4.3.3 | pe | SRR28393551 | Pre-XDR-TB | lineage4 | None | ERR4813000 | MDR-TB | lineage4.3.3 | pe | ERR4813033 | MDR-TB | lineage4.3.3 | pe | ERR4813389 | MDR-TB | lineage4.3.3 | pe | ERR779897 | MDR-TB | lineage4.3.3 | pe | ERR7910863 | Pre-XDR-TB | lineage4.3.3 | pe | ERR7910878 | Pre-XDR-TB | lineage4.3.3 | pe | ERR5865444 | MDR-TB | lineage4.3.3 | None | ERR7910996 | Pre-XDR-TB | lineage4.3.3 | pe | ERR7911343 | MDR-TB | lineage4.3.3 | pe | ERR4829525 | Pre-XDR-TB | lineage4.3.3 | it | ERR4829366 | MDR-TB | lineage4.7 | it | ERR4812953 | MDR-TB | lineage4.3.3 | pe | ERR4813022 | MDR-TB | lineage4.3.3 | None | ERR4813216 | Pre-XDR-TB | lineage4.3.3 | pe | ERR4813648 | MDR-TB | lineage4.3.3 | None | ERR4813704 | MDR-TB | lineage4.3.3 | None | ERR4813425 | MDR-TB | lineage4.3.3 | pe | ERR4813439 | MDR-TB | lineage4.3.3 | pe | ERR775300 | MDR-TB | lineage4.3.3 | pe | ERR751620 | Pre-XDR-TB | lineage4 | pe | ERR775315 | MDR-TB | lineage4.3.3 | pe | ERR751387 | MDR-TB | lineage4.3.3 | pe | ERR4812842 | MDR-TB | lineage4.3.3 | None | ERR845941 | MDR-TB | lineage4.3.3 | pe | ERR4813010 | MDR-TB | lineage4.3.3 | None | ERR751566 | MDR-TB | lineage4.3.3 | pe | ERR4813017 | MDR-TB | lineage4.3.3 | None | ERR751619 | Pre-XDR-TB | lineage4.3.3 | pe | ERR4813284 | MDR-TB | lineage4.3.3 | pe | ERR4813311 | MDR-TB | lineage4.3.3 | None | SRR21576593 | RR-TB | lineage4.5 | None | ERR2510169 | MDR-TB | lineage4.3.3 | pe | ERR2510233 | MDR-TB | lineage4.3.3 | pe | ERR2510165 | MDR-TB | lineage4.3.3 | pe | ERR2510212 | MDR-TB | lineage4.3.3 | pe | ERR2510197 | MDR-TB | lineage4.3.3 | pe | ERR2510150 | MDR-TB | lineage4.3.3 | pe | ERR2510172 | MDR-TB | lineage4.3.3 | pe | ERR2510141 | MDR-TB | lineage4.3.3 | pe | ERR1034705 | MDR-TB | lineage4.3.3 | pe | ERR6866686 | MDR-TB | lineage4.3.2;lineage4.3.3 | None | SRR22461574 | MDR-TB | lineage4.3.3 | None | SRR3732594 | MDR-TB | lineage4.3.3 | pe | SRR7517836 | MDR-TB | lineage4.3.3 | pe | SRR7517816 | MDR-TB | lineage4.3.3 | pe | SRR10808507 | MDR-TB | lineage4.3.3 | None | ERR4024846 | MDR-TB | lineage4.3.3 | None | SRR22461600 | Pre-XDR-TB | lineage4.3.3 | None | ERR9119505 | MDR-TB | lineage4.6.2.2 | None | ERR9119626 | MDR-TB | lineage4.6.2.2 | None | ERR4800624 | Pre-XDR-TB | lineage3.1.2.1 | None | ERR4812021 | MDR-TB | lineage4.3.3 | pe | SRR13870367 | Pre-XDR-TB | lineage4.3.3 | None | SRR22048358 | MDR-TB | lineage4.7 | None | ERR9029864 | MDR-TB | lineage4.3.3 | None | SRR10808577 | MDR-TB | lineage4.3.3 | None | SRR11662283 | MDR-TB | lineage4.5 | None | SAMEA5569539 | MDR-TB | lineage4.3.3 | None | ERR4813708 | MDR-TB | lineage4.3.3 | None | SRR16915727 | MDR-TB | lineage4.3.3 | None | ERR13260685 | MDR-TB | lineage4.3.3 | None | ERR13261566 | MDR-TB | lineage4.3.3 | None | ERR9806942 | Pre-XDR-TB | lineage2.2.1 | None | ERR10748449 | Pre-XDR-TB | lineage2.2.1 | None | SRR26112150 | MDR-TB | lineage4.1.4 | None |
|---|
