lineage | Count |
---|---|
lineage2.2.1 | 76 |
lineage4.4.2 | 5 |
lineage4.1.2.1 | 11 |
lineage4.2.1;lineage2.2.1 | 1 |
lineage4.3.4.2 | 4 |
lineage4.3.4.2;lineage4.3.4.1 | 1 |
lineage4.3.2 | 3 |
lineage3.1 | 2 |
lineage4.8 | 6 |
lineage4.3.3 | 1 |
lineage4.6.1.2 | 56 |
lineage4.6.1.2;lineage4.2.2.2 | 1 |
lineage2.2.1.1 | 3 |
lineage4.9;lineage2.2.1 | 1 |
lineage4.3.4.1 | 2 |
lineage4.3.2.1 | 1 |
lineage3.1.1 | 1 |
lineage4.2.2.1 | 8 |
lineage3 | 2 |
lineage4.2.2 | 1 |
lineage4 | 1 |
lineage2.2 | 3 |
lineage4.6.1.2;lineage4.6.1.1 | 1 |
lineage1.2.1.2.1 | 1 |
spoligotype | Count |
---|---|
None | 192 |
ID | Drug resistance | Lineage | Country iso2 | SRR7646019 | MDR-TB | lineage2.2.1 | None | SRR8651600 | Pre-XDR-TB | lineage2.2.1 | cn | SRR8651625 | MDR-TB | lineage4.4.2 | cn | SRR8651643 | MDR-TB | lineage4.4.2 | cn | SRR8651650 | Pre-XDR-TB | lineage4.1.2.1 | cn | ERR067605 | Pre-XDR-TB | lineage2.2.1 | ru | ERR10762451 | MDR-TB | lineage2.2.1 | None | ERR10762342 | Pre-XDR-TB | lineage4.2.1;lineage2.2.1 | None | ERR10762271 | MDR-TB | lineage2.2.1 | None | ERR108510 | MDR-TB | lineage2.2.1 | ru | ERR10762496 | MDR-TB | lineage2.2.1 | None | ERR108469 | Pre-XDR-TB | lineage2.2.1 | ru | ERR11044220 | Pre-XDR-TB | lineage2.2.1 | None | ERR4276910 | Pre-XDR-TB | lineage2.2.1 | None | ERR133984 | MDR-TB | lineage2.2.1 | ru | ERR3256254 | MDR-TB | lineage4.3.4.2 | ph | ERR3256259 | MDR-TB | lineage4.3.4.2 | ph | ERR403227 | MDR-TB | lineage2.2.1 | None | ERR3256236 | MDR-TB | lineage4.3.4.2;lineage4.3.4.1 | ph | ERR3256234 | MDR-TB | lineage4.3.4.2 | ph | ERR4178150 | RR-TB | lineage4.3.2 | None | ERR4797514 | MDR-TB | lineage3.1 | in | ERR4800365 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797687 | MDR-TB | lineage3.1 | in | ERR4798296 | Pre-XDR-TB | lineage4.8 | in | ERR4798933 | MDR-TB | lineage4.3.3 | in | ERR4797535 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798756 | Pre-XDR-TB | lineage4.8 | in | ERR4799203 | Pre-XDR-TB | lineage4.8 | in | ERR4800094 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR4810961 | MDR-TB | lineage2.2.1 | cn | ERR5865784 | MDR-TB | lineage2.2.1 | None | ERR5864575 | MDR-TB | lineage2.2.1 | None | ERR5864576 | MDR-TB | lineage2.2.1 | None | ERR5865081 | MDR-TB | lineage4.8 | None | ERR5864581 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864580 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864582 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865802 | MDR-TB | lineage2.2.1 | None | ERR5865783 | MDR-TB | lineage2.2.1 | None | ERR5865801 | MDR-TB | lineage2.2.1 | None | ERR6358719 | MDR-TB | lineage4.6.1.2 | None | ERR5865844 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865845 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865835 | MDR-TB | lineage2.2.1 | None | ERR6358720 | MDR-TB | lineage4.6.1.2 | None | ERR6358728 | MDR-TB | lineage4.6.1.2 | None | ERR6358718 | MDR-TB | lineage4.6.1.2 | None | ERR6358750 | MDR-TB | lineage4.6.1.2 | None | ERR6358743 | Pre-XDR-TB | lineage4.6.1.2 | None | ERR6358727 | MDR-TB | lineage4.6.1.2 | None | ERR6358758 | MDR-TB | lineage4.6.1.2 | None | ERR6358742 | MDR-TB | lineage4.6.1.2;lineage4.2.2.2 | None | ERR6358777 | MDR-TB | lineage4.6.1.2 | None | ERR6358760 | MDR-TB | lineage4.6.1.2 | None | ERR6358768 | MDR-TB | lineage4.6.1.2 | None | ERR6358787 | MDR-TB | lineage4.6.1.2 | None | ERR6358776 | MDR-TB | lineage4.6.1.2 | None | ERR6358775 | MDR-TB | lineage4.6.1.2 | None | ERR6358782 | Pre-XDR-TB | lineage4.6.1.2 | None | ERR6358783 | MDR-TB | lineage4.6.1.2 | None | ERR6358803 | MDR-TB | lineage4.6.1.2 | None | ERR6358791 | MDR-TB | lineage4.6.1.2 | None | ERR6358797 | MDR-TB | lineage4.6.1.2 | None | ERR6358808 | MDR-TB | lineage4.6.1.2 | None | ERR6358813 | MDR-TB | lineage4.6.1.2 | None | ERR6358814 | MDR-TB | lineage4.6.1.2 | None | ERR6358824 | MDR-TB | lineage4.6.1.2 | None | ERR6358812 | MDR-TB | lineage4.6.1.2 | None | ERR6358825 | MDR-TB | lineage4.6.1.2 | None | ERR6358916 | MDR-TB | lineage4.6.1.2 | None | ERR6358938 | MDR-TB | lineage4.6.1.2 | None | ERR6358923 | MDR-TB | lineage4.6.1.2 | None | ERR6358932 | MDR-TB | lineage4.6.1.2 | None | ERR6358964 | MDR-TB | lineage4.6.1.2 | None | ERR6358944 | MDR-TB | lineage4.6.1.2 | None | ERR6358992 | MDR-TB | lineage4.6.1.2 | None | ERR6358985 | MDR-TB | lineage4.6.1.2 | None | ERR6358984 | MDR-TB | lineage4.6.1.2 | None | ERR6359019 | MDR-TB | lineage4.6.1.2 | None | ERR6359013 | MDR-TB | lineage4.6.1.2 | None | ERR6358997 | MDR-TB | lineage4.6.1.2 | None | ERR6359046 | MDR-TB | lineage4.6.1.2 | None | ERR6359031 | MDR-TB | lineage4.6.1.2 | None | ERR6359010 | MDR-TB | lineage4.6.1.2 | None | ERR6359032 | MDR-TB | lineage4.6.1.2 | None | ERR6359043 | MDR-TB | lineage4.6.1.2 | None | ERR6359090 | MDR-TB | lineage4.6.1.2 | None | ERR6359093 | MDR-TB | lineage4.6.1.2 | None | ERR6359058 | MDR-TB | lineage4.6.1.2 | None | ERR7910961 | MDR-TB | lineage2.2.1 | md | ERR6865682 | RR-TB | lineage4.3.2 | None | ERR6359109 | MDR-TB | lineage4.6.1.2 | None | ERR7737818 | MDR-TB | lineage4.8 | None | ERR7910948 | MDR-TB | lineage2.2.1 | md | ERR7911175 | MDR-TB | lineage2.2.1.1 | vn | ERR7911388 | Pre-XDR-TB | lineage2.2.1 | us | SRR1062864 | Sensitive | lineage4.9;lineage2.2.1 | None | ERR8665788 | Pre-XDR-TB | lineage2.2.1 | None | ERR9119501 | MDR-TB | lineage4.3.4.1 | None | ERR7911404 | Pre-XDR-TB | lineage2.2.1 | us | ERR8665787 | Pre-XDR-TB | lineage2.2.1 | None | ERR9992842 | MDR-TB | lineage2.2.1 | None | ERR9993097 | Pre-XDR-TB | lineage4.3.2.1 | None | SRR10380125 | Pre-XDR-TB | lineage2.2.1 | None | SRR11567784 | MDR-TB | lineage4.4.2 | None | SRR1144753 | MDR-TB | lineage4.6.1.2 | None | SRR1146380 | MDR-TB | lineage4.6.1.2 | None | SRR11567783 | MDR-TB | lineage4.4.2 | None | SRR11567785 | MDR-TB | lineage4.4.2 | None | SRR1162792 | MDR-TB | lineage4.6.1.2 | None | SRR11567791 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR1166104 | MDR-TB | lineage2.2.1 | None | SRR1169186 | MDR-TB | lineage3.1.1 | None | SRR1166871 | MDR-TB | lineage4.6.1.2 | None | SRR1169077 | MDR-TB | lineage2.2.1 | None | SRR14781959 | MDR-TB | lineage2.2.1 | None | SRR12931706 | MDR-TB | lineage4.1.2.1 | None | SRR13232476 | MDR-TB | lineage2.2.1 | None | SRR14164553 | MDR-TB | lineage4.1.2.1 | None | SRR13232534 | Pre-XDR-TB | lineage2.2.1 | None | SRR14782199 | MDR-TB | lineage2.2.1 | None | SRR14801729 | MDR-TB | lineage2.2.1 | None | SRR2101708 | RR-TB | lineage2.2.1 | None | SRR15901695 | MDR-TB | lineage2.2.1 | None | SRR21001885 | Pre-XDR-TB | lineage2.2.1 | None | SRR14807542 | Pre-XDR-TB | lineage2.2.1 | None | SRR15315927 | Sensitive | lineage2.2.1.1 | None | SRR15315980 | RR-TB | lineage2.2.1 | None | SRR16370625 | MDR-TB | lineage2.2.1.1 | None | SRR18002935 | Pre-XDR-TB | lineage2.2.1 | None | SRR18715372 | MDR-TB | lineage2.2.1 | None | SRR20969359 | Pre-XDR-TB | lineage2.2.1 | None | SRR21001884 | Pre-XDR-TB | lineage2.2.1 | None | SRR1723853 | MDR-TB | lineage2.2.1 | cn | ERR11081349 | MDR-TB | lineage2.2.1 | None | ERR11082026 | Pre-XDR-TB | lineage2.2.1 | None | ERR4813899 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR11082996 | MDR-TB | lineage2.2.1 | None | ERR4813827 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR4813853 | MDR-TB | lineage4.1.2.1 | br | ERR4813879 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR4813920 | MDR-TB | lineage4.1.2.1 | None | SRR1723854 | MDR-TB | lineage2.2.1 | cn | ERR2041795 | MDR-TB | lineage4.2.2.1 | rs | ERR2041688 | MDR-TB | lineage4.2.2.1 | rs | SRR3675273 | Sensitive | lineage3 | None | ERR2041798 | MDR-TB | lineage4.2.2.1 | rs | ERR2124080 | MDR-TB | lineage4.6.1.2 | None | ERR4813457 | RR-TB | lineage4.3.2 | pe | ERR2041709 | MDR-TB | lineage4.2.2.1 | rs | ERR2124081 | MDR-TB | lineage4.6.1.2 | None | ERR2124082 | MDR-TB | lineage4.6.1.2 | None | ERR2041723 | Pre-XDR-TB | lineage4.2.2.1 | rs | SRR3743406 | MDR-TB | lineage2.2.1 | None | SRR5065595 | MDR-TB | lineage2.2.1 | vn | ERR2510520 | Pre-XDR-TB | lineage4.2.2 | pk | SAMN02414879 | MDR-TB | lineage4.6.1.2 | se | ERR229990 | RR-TB | lineage4.8 | ru | SAMN02584676 | MDR-TB | lineage2.2.1 | md | ERR2041777 | MDR-TB | lineage4.2.2.1 | rs | ERR2432989 | MDR-TB | lineage4.1.2.1 | br | ERR2432999 | Pre-XDR-TB | lineage4.1.2.1 | br | ERR2510302 | MDR-TB | lineage3 | pk | SRR5153253 | Pre-XDR-TB | lineage2.2.1 | None | SRR5153235 | MDR-TB | lineage2.2.1 | None | ERR2041756 | MDR-TB | lineage4.2.2.1 | rs | SAMEA2533987 | MDR-TB | lineage2.2.1 | uz | ERR2516521 | MDR-TB | lineage4 | nl | SRR671829 | Pre-XDR-TB | lineage2.2.1 | cn | SRR23310881 | MDR-TB | lineage2.2 | None | ERR4822297 | Pre-XDR-TB | lineage2.2.1 | de | SRR6257005 | Pre-XDR-TB | lineage2.2.1 | None | ERR3132090 | MDR-TB | lineage4.6.1.2 | None | SRR23310929 | MDR-TB | lineage2.2 | None | SRR23311076 | MDR-TB | lineage2.2 | None | ERR4828073 | Pre-XDR-TB | lineage2.2.1 | None | ERR4829549 | MDR-TB | lineage2.2.1 | it | SRR6257025 | MDR-TB | lineage2.2.1 | ru | ERR4832034 | MDR-TB | lineage2.2.1 | vn | ERR4872095 | MDR-TB | lineage4.3.4.1 | None | SRR6832504 | MDR-TB | lineage2.2.1 | None | SRR671837 | MDR-TB | lineage2.2.1 | cn | SRR6982145 | RR-TB | lineage2.2.1 | None | ERR3132130 | MDR-TB | lineage4.6.1.2;lineage4.6.1.1 | None | SRR6824518 | MDR-TB | lineage2.2.1 | cn | SRR6824519 | MDR-TB | lineage2.2.1 | cn | SRR7516317 | Pre-XDR-TB | lineage2.2.1 | None | ERR3132142 | MDR-TB | lineage4.6.1.2 | None | ERR2041689 | MDR-TB | lineage4.2.2.1 | rs | ERR3132156 | MDR-TB | lineage1.2.1.2.1 | None | SRR7516333 | Pre-XDR-TB | lineage2.2.1 | None |
---|