lineage | Count |
---|---|
lineage4.9 | 9 |
lineage4.8 | 67 |
lineage4.4.1.1 | 10 |
lineage4.3.4.2.1 | 20 |
lineage4.1.2 | 3 |
lineage4.1.1.3 | 8 |
lineage4.3.4.1 | 5 |
lineage4.1.2.1 | 19 |
lineage4.2.1.1 | 5 |
lineage1.1.1.1 | 2 |
lineage4.3.2.1 | 10 |
lineage4.3.3 | 10 |
lineage1.1.2 | 7 |
lineage1.1.1 | 1 |
lineage2.2.1.1 | 1 |
5 | |
La1.7.X-unk4 | 1 |
La1.7.1 | 2 |
La1.2 | 1 |
lineage3 | 15 |
lineage4.6.5 | 3 |
lineage4.3.2 | 4 |
lineage4.2.1 | 4 |
lineage4.6 | 1 |
lineage2.2.1 | 21 |
lineage4.2.2.2 | 4 |
lineage4 | 10 |
lineage4.2.2 | 1 |
lineage3.1.1 | 1 |
lineage1.2.2.2 | 5 |
lineage4.7 | 2 |
lineage4.3.4.2 | 3 |
lineage4.6.2.2 | 1 |
lineage1.1.3.2 | 1 |
lineage4.4 | 1 |
lineage4.1.1 | 2 |
La1.8.1 | 2 |
lineage3.1.2.1 | 1 |
lineage4.4.1.1;lineage1.2.2.1 | 1 |
lineage4.4.1.2 | 2 |
lineage4.8.1 | 3 |
lineage4.3.3;lineage2.2.1 | 1 |
lineage4.9.1 | 2 |
lineage2.2.2 | 1 |
lineage4.8;lineage4.3.4.1 | 1 |
lineage2.2 | 1 |
spoligotype | Count |
---|---|
None | 280 |
ID | Drug resistance | Lineage | Country iso2 | ERR5979791 | Sensitive | lineage4.9 | None | ERR5979793 | Sensitive | lineage4.9 | None | ERR5979801 | Sensitive | lineage4.9 | None | ERR5979828 | Sensitive | lineage4.9 | None | SRR1002698 | Sensitive | lineage4.8 | None | ERR11466317 | RR-TB | lineage4.4.1.1 | None | ERR11466379 | Sensitive | lineage4.3.4.2.1 | None | ERR11466385 | Sensitive | lineage4.4.1.1 | None | ERR11466437 | Sensitive | lineage4.1.2 | None | ERR11466457 | Sensitive | lineage4.1.1.3 | None | ERR9285855 | Sensitive | lineage4.3.4.1 | None | ERR9891976 | Sensitive | lineage4.1.2.1 | None | SRR1002683 | Sensitive | lineage4.2.1.1 | None | ERR7339146 | Sensitive | lineage1.1.1.1 | None | ERR11466275 | Sensitive | lineage4.3.2.1 | None | ERR11466481 | Sensitive | lineage4.3.2.1 | None | ERR11466511 | MDR-TB | lineage4.3.2.1 | None | ERR7801195 | HR-TB | lineage4.3.3 | None | ERR983235 | MDR-TB | lineage1.1.2 | None | ERR9892286 | Sensitive | lineage4.1.2.1 | None | SRR1002697 | HR-TB | lineage4.2.1.1 | None | SRR1002701 | Sensitive | lineage4.3.3 | None | SRR12199469 | Sensitive | lineage1.1.1 | None | SRR11972220 | HR-TB | lineage2.2.1.1 | None | SRR11972234 | Sensitive | None | SRR11972413 | MDR-TB | lineage1.1.2 | None | SRR12199455 | Other | None | SRR11972217 | HR-TB | lineage4.8 | None | SRR11972414 | MDR-TB | lineage1.1.2 | None | SRR11972453 | Sensitive | lineage1.1.2 | None | SRR12199389 | Other | None | SRR13986565 | Other | La1.7.X-unk4 | None | SRR13986556 | Other | La1.7.1 | None | SRR13986559 | Other | La1.2 | None | SRR13986566 | Other | La1.7.1 | None | SRR18213686 | HR-TB | lineage3 | None | SRR16088004 | Other | lineage4.1.2 | None | SRR16088231 | Sensitive | lineage4.2.1.1 | None | SRR14801749 | Sensitive | None | ERR11081688 | MDR-TB | lineage4.6.5 | None | SRR18715065 | MDR-TB | lineage4.1.2.1 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR21676316 | Sensitive | lineage4.3.2 | None | SRR21677874 | Sensitive | None | SRR21677891 | Other | lineage4.1.2 | None | ERR11082694 | MDR-TB | lineage4.6.5 | None | SRR23862092 | Sensitive | lineage4.2.1 | None | SRR23862081 | Sensitive | lineage4.3.3 | None | SRR3675466 | Sensitive | lineage4.6 | None | SRR3085281 | Pre-XDR-TB | lineage2.2.1 | None | ERR2229014 | Sensitive | lineage4.8 | dk | ERR2228922 | Sensitive | lineage4.8 | dk | ERR4814501 | Other | lineage4.2.2.2 | None | ERR2229742 | Other | lineage4 | None | ERR4815071 | Sensitive | lineage3 | None | ERR2229531 | Sensitive | lineage4.8 | None | ERR2229741 | Sensitive | lineage4.8 | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | ERR2228948 | Sensitive | lineage4.8 | None | ERR2229540 | Other | lineage4.8 | None | ERR2229034 | Sensitive | lineage4.8 | None | ERR2228981 | HR-TB | lineage4.8 | None | ERR2228999 | Sensitive | lineage4.8 | None | ERR2229002 | Sensitive | lineage4 | None | ERR1950029 | Other | lineage4.8 | None | ERR2228998 | Sensitive | lineage4.8 | None | ERR2229005 | Sensitive | lineage4.8 | None | ERR1950027 | Sensitive | lineage4.8 | None | ERR2229036 | Sensitive | lineage4.8 | None | ERR2229745 | HR-TB | lineage4.8 | None | ERR2229038 | Sensitive | lineage4.8 | None | ERR2229096 | Sensitive | lineage4 | None | ERR2229042 | HR-TB | lineage4.8 | None | ERR4816142 | Sensitive | lineage4.9 | None | ERR2229586 | Other | lineage4.8 | None | ERR2229109 | Sensitive | lineage4.8 | None | ERR2229142 | HR-TB | lineage4.8 | None | ERR2229588 | Sensitive | lineage4.8 | None | ERR4816361 | Sensitive | lineage4.1.2.1 | None | ERR2229163 | Sensitive | lineage4 | None | ERR4816204 | Sensitive | lineage4.2.2 | None | ERR2229115 | Other | lineage4.8 | None | ERR2229130 | Sensitive | lineage4.8 | None | ERR2229614 | Sensitive | lineage4.8 | None | ERR2229168 | Other | lineage4 | None | ERR2229289 | Sensitive | lineage4.8 | None | ERR2229235 | RR-TB | lineage4.8 | None | ERR2229630 | Sensitive | lineage4.8 | None | ERR2229634 | Sensitive | lineage4.8 | None | ERR2229633 | Sensitive | lineage4.8 | None | ERR2229294 | Other | lineage4.8 | None | ERR2229323 | Sensitive | lineage4.8 | None | ERR2229298 | Sensitive | lineage4.8 | None | ERR2229324 | Other | lineage4.8 | None | ERR2229311 | Sensitive | lineage4.8 | None | ERR2229366 | Other | lineage4.8 | None | ERR2229369 | Other | lineage4.8 | None | ERR2229383 | Sensitive | lineage4.8 | None | ERR2229381 | Sensitive | lineage4.8 | None | ERR2229380 | Sensitive | lineage4.8 | None | ERR2229382 | Sensitive | lineage4.8 | None | ERR2229406 | Other | lineage4.8 | None | ERR2229384 | Sensitive | lineage4.8 | None | ERR2229399 | Sensitive | lineage4.8 | None | ERR2229403 | Sensitive | lineage4.8 | None | ERR2229395 | Sensitive | lineage4.8 | None | ERR2229410 | Sensitive | lineage4.8 | None | ERR2229476 | Sensitive | lineage4.8 | None | ERR2229802 | Sensitive | lineage4.8 | None | ERR2229708 | HR-TB | lineage4.8 | None | ERR2229711 | Sensitive | lineage4.8 | None | ERR2229441 | Sensitive | lineage4.8 | None | ERR2229462 | Other | lineage4.8 | None | ERR2229521 | Sensitive | lineage4.8 | None | ERR2228868 | Sensitive | lineage4.8 | None | ERR4817441 | Sensitive | lineage4.2.2.2 | None | ERR2229499 | Sensitive | lineage4 | None | ERR2228811 | Sensitive | lineage4.8 | None | ERR2228823 | Sensitive | lineage4 | None | ERR2228897 | Sensitive | lineage4 | None | ERR2228915 | Sensitive | lineage4.8 | None | ERR2228903 | RR-TB | lineage4 | None | ERR2513054 | Other | lineage4.2.2.2 | None | ERR2512972 | Other | lineage1.1.2 | None | ERR4817770 | Sensitive | lineage3 | None | ERR4817902 | Sensitive | lineage3.1.1 | None | ERR4818726 | Other | lineage4.1.2.1 | None | ERR4818170 | Other | lineage4.1.2.1 | None | ERR4818736 | Sensitive | lineage1.2.2.2 | None | ERR2513436 | MDR-TB | lineage2.2.1 | None | ERR4817987 | Other | lineage4.7 | None | ERR2513217 | Sensitive | lineage4.7 | None | ERR2512615 | Sensitive | lineage3 | None | ERR4818507 | RR-TB | lineage4.1.2.1 | None | ERR4818922 | Sensitive | lineage3 | None | ERR4818503 | Other | lineage3 | None | ERR2513231 | RR-TB | lineage4.3.4.2 | None | ERR2512912 | Sensitive | lineage4.6.2.2 | None | ERR4818944 | Sensitive | lineage3 | None | ERR4818607 | Sensitive | lineage4.9 | None | ERR4818550 | Sensitive | lineage4.1.2.1 | None | ERR2513628 | Other | lineage4.1.2.1 | None | ERR4817601 | Sensitive | lineage2.2.1 | None | ERR2514197 | RR-TB | lineage1.1.1.1 | None | ERR2513895 | Sensitive | lineage4.8 | None | ERR4819515 | HR-TB | lineage4.2.1 | None | ERR4819500 | Sensitive | lineage4.1.2.1 | None | ERR4819546 | HR-TB | lineage3 | None | ERR4819842 | Other | lineage4.1.2.1 | None | ERR4819867 | Other | lineage1.1.3.2 | None | ERR2514708 | Sensitive | lineage4.1.2.1 | None | ERR2514962 | Other | lineage4.4 | None | ERR2514873 | HR-TB | lineage3 | None | ERR4819947 | Sensitive | lineage4.1.1 | None | ERR4821024 | Sensitive | lineage3 | None | ERR2515013 | Sensitive | lineage2.2.1 | None | ERR4820155 | MDR-TB | lineage4.3.2 | None | SRR5535718 | HR-TB | lineage4.3.3 | None | SRR5431711 | Other | La1.8.1 | None | SRR5431792 | Other | La1.8.1 | None | ERR4821702 | Sensitive | lineage4.3.4.2 | None | SRR5535779 | Sensitive | lineage4.3.2.1 | None | ERR4821729 | Sensitive | lineage4.1.2.1 | None | SRR6045932 | MDR-TB | lineage4.2.2.2 | None | SRR6044910 | Sensitive | lineage3 | None | SRR6257039 | Sensitive | lineage4.2.1.1 | None | SRR6045086 | Other | lineage3 | None | SRR6485085 | Sensitive | lineage2.2.1 | None | SRR6484891 | HR-TB | lineage4.8 | None | SRR6257063 | HR-TB | lineage4.2.1.1 | None | SRR6257064 | Sensitive | lineage4.3.3 | None | SRR6257062 | Sensitive | lineage4.8 | None | SRR6257061 | MDR-TB | lineage2.2.1 | None | ERR11466160 | Sensitive | lineage4.4.1.1 | None | ERR4814291 | Sensitive | lineage4.3.2 | gb | ERR4816182 | Other | lineage3.1.2.1 | gb | ERR3148044 | MDR-TB | lineage4.8 | None | ERR11466127 | Other | lineage4.3.2.1 | None | ERR4814444 | Sensitive | lineage3 | gb | ERR11466143 | Sensitive | lineage4.4.1.1 | None | ERR4831825 | HR-TB | lineage2.2.1 | None | SRR6785175 | Sensitive | lineage4.8 | None | SRR6785157 | Sensitive | lineage4.2.1 | None | SRR6785189 | Other | lineage4.1.2.1 | None | SRR6785187 | Sensitive | lineage4.2.1 | None | SRR6785184 | Sensitive | lineage4.3.3 | None | SRR6785327 | Sensitive | lineage2.2.1 | None | SRR6785302 | Sensitive | lineage4.8 | None | SRR6785296 | HR-TB | lineage2.2.1 | None | SRR6785434 | Sensitive | lineage2.2.1 | None | SRR6785356 | Sensitive | lineage4.3.3 | None | SRR6785363 | HR-TB | lineage2.2.1 | None | SRR6785446 | Sensitive | lineage4.3.3 | None | SRR6785453 | HR-TB | lineage2.2.1 | None | SRR6785437 | HR-TB | lineage2.2.1 | None | SRR6785525 | HR-TB | lineage4.8 | None | SRR6785475 | Other | lineage2.2.1 | None | ERR11465532 | RR-TB | lineage1.1.2 | None | ERR11465497 | Sensitive | lineage4.3.2.1 | None | ERR11465383 | HR-TB | lineage4.3.4.2.1 | None | ERR11465499 | Sensitive | lineage4.3.4.2.1 | None | ERR11465637 | Sensitive | lineage4.3.4.2.1 | None | ERR11465607 | Sensitive | lineage4.1.1.3 | None | ERR11465711 | Other | lineage4.4.1.1;lineage1.2.2.1 | None | ERR11465657 | Sensitive | lineage4.4.1.2 | None | ERR11465644 | Sensitive | lineage4.3.3 | None | ERR11465701 | Sensitive | lineage4.4.1.1 | None | ERR11465734 | Sensitive | lineage4.3.4.1 | None | ERR11465864 | Sensitive | lineage4.3.4.1 | None | ERR11465803 | Sensitive | lineage2.2.1 | None | ERR11466014 | Sensitive | lineage4.3.4.2.1 | None | ERR2510682 | Pre-XDR-TB | lineage2.2.1 | it | ERR11466268 | Sensitive | lineage4.1.2.1 | None | ERR11466040 | Sensitive | lineage4.8.1 | None | ERR11465826 | Sensitive | lineage4.3.4.2.1 | None | ERR11464996 | Sensitive | lineage4.9 | None | ERR11465239 | Sensitive | lineage4.8.1 | None | SRR7517691 | Pre-XDR-TB | lineage3 | None | ERR11466030 | Sensitive | lineage4.3.4.2.1 | None | ERR11466102 | Sensitive | lineage4.3.4.2.1 | None | ERR11466500 | Sensitive | lineage4.1.1.3 | None | ERR11466138 | Sensitive | lineage1.2.2.2 | None | SRR998855 | Sensitive | lineage4.3.3;lineage2.2.1 | None | SRR998861 | MDR-TB | lineage2.2.1 | None | SRR998858 | Pre-XDR-TB | lineage2.2.1 | None | ERR11466482 | Sensitive | lineage4.9.1 | None | ERR11466475 | Sensitive | lineage4.1.2.1 | None | ERR11466136 | Sensitive | lineage4.8.1 | None | ERR11466263 | RR-TB | lineage4.9.1 | None | SRR7765063 | Pre-XDR-TB | lineage4.8 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR11465523 | MDR-TB | lineage4.1.1.3 | None | ERR11465414 | Sensitive | lineage4.3.4.2.1 | None | ERR11465442 | Sensitive | lineage4.3.4.2.1 | None | ERR11465347 | Sensitive | lineage4.3.4.2.1 | None | ERR11465608 | Sensitive | lineage4.1.1.3 | None | ERR11465622 | Sensitive | lineage4.4.1.1 | None | ERR11465753 | HR-TB | lineage2.2.2 | None | ERR11465623 | Sensitive | lineage4.1.1.3 | None | ERR11465634 | Sensitive | lineage4.3.4.2.1 | None | ERR11465671 | Sensitive | lineage4.3.4.2.1 | None | ERR11465728 | Sensitive | lineage4.4.1.1 | None | ERR11465175 | Sensitive | lineage4.8;lineage4.3.4.1 | None | ERR11466223 | HR-TB | lineage1.2.2.2 | None | ERR11466311 | MDR-TB | lineage4.3.4.2.1 | None | ERR11464982 | Sensitive | lineage4.1.1.3 | None | ERR11466401 | Sensitive | lineage4.9 | None | ERR11465027 | Sensitive | lineage4.3.2.1 | None | ERR11466360 | Sensitive | lineage4.3.4.2.1 | None | ERR11466382 | Sensitive | lineage4.1.1.3 | None | ERR11465208 | Sensitive | lineage4.3.4.1 | None | ERR11466465 | Sensitive | lineage4.4.1.1 | None | ERR11466480 | Sensitive | lineage4.3.4.2.1 | None | ERR11466576 | Sensitive | lineage4.3.4.2.1 | None | ERR11465382 | Sensitive | lineage4.1.2.1 | None | ERR11465396 | Sensitive | lineage1.2.2.2 | None | ERR10969264 | Sensitive | lineage4.3.2 | None | ERR11465403 | Sensitive | lineage4.3.4.2.1 | None | ERR11466519 | Sensitive | lineage4.4.1.1 | None | ERR11466521 | Sensitive | lineage4.1.2.1 | None | ERR11043614 | MDR-TB | lineage4.6.5 | None | ERR11465561 | Sensitive | lineage4.3.2.1 | None | ERR1194813 | Other | lineage2.2.1 | None | ERR11465560 | MDR-TB | lineage1.1.2 | None | ERR11465614 | Sensitive | lineage4.4.1.1 | None | ERR1194815 | Other | lineage2.2.1 | None | ERR1194817 | HR-TB | lineage2.2 | None | ERR11465619 | Sensitive | lineage4.3.4.1 | None | ERR1194816 | Other | lineage2.2.1 | None | ERR11465718 | Sensitive | lineage1.2.2.2 | None | ERR11465636 | Sensitive | lineage4.1.2.1 | None | ERR11465677 | Sensitive | lineage4.3.2.1 | None | ERR11465686 | Sensitive | lineage4.3.2.1 | None | ERR3828633 | Sensitive | lineage4.3.4.2 | None | ERR11465725 | Sensitive | lineage4.3.4.2.1 | None | ERR4132452 | MDR-TB | lineage4.3.3 | None | ERR4195506 | HR-TB | lineage4.8 | None | ERR4132445 | Sensitive | lineage4 | None | ERR2514075 | MDR-TB | lineage3 | gb | ERR2514525 | Sensitive | lineage4.1.1 | gb |
---|