lineage | Count |
---|---|
lineage4.2.2.2 | 90 |
lineage4.3.4.2 | 31 |
lineage3 | 8 |
lineage4.3.3 | 109 |
lineage4.4.1.1 | 8 |
lineage2.2.1 | 3 |
lineage4.3.4.1;lineage4.3.3 | 2 |
lineage4.2.1.1 | 1 |
lineage4.6.1.2 | 5 |
lineage1.2.2.2 | 8 |
lineage3;lineage1.2.2.2 | 3 |
2 | |
lineage4.1.1 | 3 |
lineage4.2.2 | 1 |
lineage4.1.2.1 | 5 |
lineage4 | 3 |
lineage4.6.1.1 | 1 |
lineage1.1.1.1 | 7 |
lineage3.1.2.1 | 2 |
lineage2.1 | 1 |
lineage1.1.1 | 2 |
lineage4.2 | 1 |
lineage2.2.2 | 1 |
lineage1 | 1 |
lineage2.2.1.1 | 3 |
lineage4.4.2 | 1 |
lineage1.2.1.2.1 | 2 |
lineage4.5 | 2 |
lineage1.1.2 | 2 |
lineage2.2 | 1 |
lineage4.6.2.2 | 1 |
spoligotype | Count |
---|---|
None | 310 |
ID | Drug resistance | Lineage | Country iso2 | ERR4830796 | Pre-XDR-TB | lineage4.2.2.2 | None | ERR4830834 | MDR-TB | lineage4.2.2.2 | None | ERR4830809 | Pre-XDR-TB | lineage4.2.2.2 | None | ERR2677447 | MDR-TB | lineage4.2.2.2 | de | ERR4830839 | MDR-TB | lineage4.2.2.2 | et | ERR4828871 | MDR-TB | lineage4.2.2.2 | None | ERR4828843 | MDR-TB | lineage4.2.2.2 | None | ERR4828989 | MDR-TB | lineage4.2.2.2 | it | ERR4829756 | MDR-TB | lineage4.3.4.2 | it | ERR4829824 | Pre-XDR-TB | lineage3 | it | ERR4828868 | MDR-TB | lineage4.2.2.2 | None | ERR4828996 | MDR-TB | lineage4.2.2.2 | None | SRR6046888 | MDR-TB | lineage3 | gb | ERR4830782 | MDR-TB | lineage4.2.2.2 | et | ERR4829004 | MDR-TB | lineage4.2.2.2 | it | SRR6153144 | HR-TB | lineage3 | ca | SRR7517834 | MDR-TB | lineage4.3.3 | pe | ERR4831240 | MDR-TB | lineage4.2.2.2 | de | SAMN02414881 | MDR-TB | lineage4.2.2.2 | se | SAMN02414935 | MDR-TB | lineage4.4.1.1 | se | ERR4831239 | MDR-TB | lineage4.2.2.2 | None | SAMN02414962 | MDR-TB | lineage4.2.2.2 | se | SRR8651597 | Pre-XDR-TB | lineage2.2.1 | cn | SRR7781499 | Pre-XDR-TB | lineage3 | None | ERR1023344 | MDR-TB | lineage4.2.2.2 | None | SRR7781506 | MDR-TB | lineage4.2.2.2 | None | DRR184619 | MDR-TB | lineage2.2.1 | vn | ERR1034703 | MDR-TB | lineage4.3.3 | pe | ERR1023410 | MDR-TB | lineage4.2.2.2 | None | ERR1034750 | MDR-TB | lineage4.3.3 | pe | ERR1034748 | MDR-TB | lineage4.3.3 | pe | ERR1034798 | MDR-TB | lineage4.3.3 | pe | ERR1034757 | MDR-TB | lineage4.3.4.1;lineage4.3.3 | pe | ERR11044007 | MDR-TB | lineage4.2.2.2 | None | ERR11043787 | MDR-TB | lineage4.2.2.2 | None | ERR11042995 | MDR-TB | lineage4.2.2.2 | None | ERR11043789 | MDR-TB | lineage4.2.1.1 | None | ERR11043936 | MDR-TB | lineage4.2.2.2 | None | ERR1199111 | MDR-TB | lineage4.6.1.2 | cd | ERR11044333 | MDR-TB | lineage4.2.2.2 | None | ERR11044613 | MDR-TB | lineage4.2.2.2 | None | ERR117667 | MDR-TB | lineage1.2.2.2 | None | ERR11044024 | MDR-TB | lineage4.2.2.2 | None | ERR3287426 | MDR-TB | lineage4.3.3 | pe | ERR3287363 | Pre-XDR-TB | lineage4.3.3 | pe | ERR3287374 | MDR-TB | lineage4.3.3 | pe | ERR3287570 | MDR-TB | lineage4.3.4.2 | None | ERR3287573 | MDR-TB | lineage4.3.4.2 | None | ERR3287572 | MDR-TB | lineage4.3.4.2 | None | ERR3287610 | Pre-XDR-TB | lineage4.3.3 | None | ERR3287818 | MDR-TB | lineage4.3.3 | pe | ERR3287691 | MDR-TB | lineage4.3.3 | pe | ERR3287725 | MDR-TB | lineage4.3.3 | pe | ERR3287766 | MDR-TB | lineage4.3.3 | pe | ERR3287803 | MDR-TB | lineage4.3.3 | None | ERR3287685 | MDR-TB | lineage4.3.3 | pe | ERR3287732 | MDR-TB | lineage4.3.3 | pe | ERR3287747 | MDR-TB | lineage4.3.3 | pe | ERR3287749 | MDR-TB | lineage4.3.3 | pe | ERR3287786 | MDR-TB | lineage4.3.3 | pe | ERR3287854 | MDR-TB | lineage4.3.3 | pe | ERR3287813 | MDR-TB | lineage4.3.3 | pe | ERR386890 | HR-TB | lineage3;lineage1.2.2.2 | None | ERR3287872 | MDR-TB | lineage4.3.3 | pe | ERR386892 | MDR-TB | lineage1.2.2.2 | None | ERR4011965 | MDR-TB | lineage4.2.2.2 | None | ERR4011954 | MDR-TB | lineage4.2.2.2 | None | ERR4011973 | MDR-TB | lineage4.2.2.2 | None | ERR4011961 | MDR-TB | lineage4.2.2.2 | None | ERR4011963 | MDR-TB | lineage4.2.2.2 | None | ERR4011964 | MDR-TB | lineage4.2.2.2 | None | ERR4011951 | MDR-TB | lineage4.2.2.2 | None | ERR4011969 | MDR-TB | lineage4.2.2.2 | None | ERR4011968 | MDR-TB | lineage4.2.2.2 | None | ERR4024938 | Pre-XDR-TB | lineage4.3.3 | None | ERR4025035 | MDR-TB | lineage4.3.3 | None | ERR4553783 | MDR-TB | None | ERR4178154 | HR-TB | lineage4.3.3 | None | ERR403355 | Other | lineage4.1.1 | None | ERR4276911 | MDR-TB | lineage4.2.2.2 | None | ERR4796795 | Pre-XDR-TB | lineage4.2.2 | in | ERR11049567 | MDR-TB | lineage4.2.2.2 | None | ERR4799189 | Other | lineage4.1.2.1 | in | ERR4800575 | Pre-XDR-TB | lineage3 | in | ERR4812064 | MDR-TB | lineage4.3.4.2 | None | ERR4811913 | MDR-TB | lineage4.3.3 | pe | ERR4811979 | MDR-TB | lineage4.3.3 | pe | ERR4812632 | MDR-TB | lineage4.3.3 | None | ERR4812567 | MDR-TB | lineage4 | pe | ERR4812356 | MDR-TB | lineage4.3.4.2 | pe | ERR6358868 | MDR-TB | lineage4.6.1.1 | None | ERR6358757 | MDR-TB | lineage4.6.1.2 | None | ERR6358920 | MDR-TB | lineage4.6.1.2 | None | ERR6397171 | MDR-TB | lineage4.2.2.2 | None | ERR6359063 | MDR-TB | lineage4.6.1.2 | None | ERR6397151 | MDR-TB | lineage4.2.2.2 | None | ERR6397154 | MDR-TB | lineage4.2.2.2 | None | ERR6865324 | Pre-XDR-TB | lineage4.3.3 | None | ERR6397199 | MDR-TB | lineage4.2.2.2 | None | ERR6866134 | MDR-TB | lineage4.3.4.2 | None | ERR6865602 | MDR-TB | lineage4.3.3 | None | ERR6865695 | HR-TB | lineage4.3.3 | None | ERR6866131 | MDR-TB | lineage4.3.3 | None | ERR6866333 | MDR-TB | lineage4.3.4.2 | None | ERR6866164 | MDR-TB | lineage4.3.3 | None | ERR6879033 | MDR-TB | lineage4.3.3 | None | ERR6866863 | MDR-TB | lineage4.3.4.2 | None | ERR6879035 | MDR-TB | lineage4.3.4.1;lineage4.3.3 | None | ERR6879047 | MDR-TB | lineage4.3.3 | None | ERR6879034 | MDR-TB | lineage4.3.3 | None | ERR751365 | MDR-TB | lineage4.3.3 | pe | ERR7339138 | Other | lineage1.1.1.1 | None | ERR751351 | MDR-TB | lineage4.3.3 | pe | ERR751437 | MDR-TB | lineage4.3.3 | pe | ERR751543 | MDR-TB | lineage4.3.3 | pe | ERR751436 | MDR-TB | lineage4.3.3 | pe | ERR751482 | MDR-TB | lineage4.3.4.2 | pe | ERR751549 | MDR-TB | lineage4.3.4.2 | pe | ERR751416 | MDR-TB | lineage4.3.3 | pe | ERR751509 | MDR-TB | lineage4.3.3 | pe | ERR751571 | MDR-TB | lineage4.3.3 | pe | ERR751548 | Pre-XDR-TB | lineage4.3.3 | pe | ERR751565 | MDR-TB | lineage4.3.4.2 | pe | ERR7737680 | MDR-TB | lineage4.2.2.2 | None | ERR751582 | MDR-TB | lineage4.3.4.2 | pe | ERR751595 | MDR-TB | lineage4.3.3 | pe | ERR7737644 | MDR-TB | lineage4.2.2.2 | None | ERR7737682 | MDR-TB | lineage4.2.2.2 | None | ERR751591 | Pre-XDR-TB | lineage4.3.3 | pe | ERR751616 | MDR-TB | lineage4.3.3 | pe | ERR751609 | MDR-TB | lineage4.3.3 | pe | ERR7737633 | MDR-TB | lineage1.1.1.1 | None | ERR7737707 | MDR-TB | lineage4.2.2.2 | None | ERR7737685 | MDR-TB | lineage4.2.2.2 | None | ERR7737756 | MDR-TB | lineage4.2.2.2 | None | ERR7737739 | MDR-TB | lineage4.2.2.2 | None | ERR7737727 | MDR-TB | lineage4.2.2.2 | None | ERR7737745 | MDR-TB | lineage4.2.2.2 | None | ERR7737776 | MDR-TB | lineage4.2.2.2 | None | ERR7737856 | MDR-TB | lineage4.2.2.2 | None | ERR7737836 | MDR-TB | lineage4.2.2.2 | None | ERR7737806 | MDR-TB | lineage4.2.2.2 | None | ERR7737882 | MDR-TB | lineage4.2.2.2 | None | ERR7737864 | MDR-TB | lineage4.2.2.2 | None | ERR7737890 | MDR-TB | lineage4.2.2.2 | None | ERR7737858 | MDR-TB | lineage4.2.2.2 | None | ERR7737896 | MDR-TB | lineage4.2.2.2 | None | ERR7737919 | MDR-TB | lineage4.2.2.2 | None | ERR7737937 | MDR-TB | lineage4.2.2.2 | None | ERR7737947 | MDR-TB | lineage4.2.2.2 | None | ERR775342 | MDR-TB | lineage4.3.4.2 | pe | ERR775350 | MDR-TB | lineage4.3.4.2 | pe | ERR775328 | MDR-TB | lineage4.3.3 | pe | ERR775338 | MDR-TB | lineage4.3.3 | pe | ERR775351 | MDR-TB | lineage4.3.4.2 | pe | ERR775358 | MDR-TB | lineage4.3.3 | pe | ERR7910859 | MDR-TB | lineage4.3.3 | None | ERR779885 | MDR-TB | lineage4.3.4.2 | pe | ERR779890 | MDR-TB | lineage4.3.3 | pe | ERR7910871 | MDR-TB | lineage4.3.4.2 | pe | ERR7910860 | MDR-TB | lineage4.3.3 | None | ERR7910880 | MDR-TB | lineage4.3.3 | pe | ERR7911285 | MDR-TB | lineage1.1.1.1 | vn | ERR7911009 | MDR-TB | lineage4.3.3 | None | ERR7911012 | MDR-TB | lineage4.3.3 | None | ERR9029854 | Pre-XDR-TB | lineage4.3.3 | None | ERR7911367 | MDR-TB | lineage4.3.3 | pe | ERR845937 | MDR-TB | lineage4.3.4.2 | pe | ERR9027231 | Pre-XDR-TB | lineage3.1.2.1 | None | ERR7911290 | MDR-TB | lineage2.1 | vn | ERR7911376 | MDR-TB | lineage4.3.3 | pe | ERR7911496 | MDR-TB | lineage1.1.1 | vn | ERR9027233 | Pre-XDR-TB | lineage3.1.2.1 | None | ERR9029849 | MDR-TB | lineage4.3.3 | None | SRR1144792 | MDR-TB | lineage4.2 | None | SRR10808671 | MDR-TB | lineage4.3.3 | None | SRR1144767 | MDR-TB | None | SRR1013559 | Pre-XDR-TB | lineage2.2.2 | None | SRR1144758 | MDR-TB | lineage4.2.2.2 | None | SRR1146418 | MDR-TB | lineage4 | None | SRR1144824 | MDR-TB | lineage4.2.2.2 | None | SRR1146320 | MDR-TB | lineage4.2.2.2 | None | SRR1146306 | MDR-TB | lineage4.2.2.2 | None | SRR1146338 | MDR-TB | lineage4.2.2.2 | None | SRR1162800 | MDR-TB | lineage4.2.2.2 | None | SRR1162818 | MDR-TB | lineage4.2.2.2 | None | SRR1162969 | MDR-TB | lineage4.2.2.2 | None | SRR1162866 | MDR-TB | lineage4.4.1.1 | None | SRR1162884 | MDR-TB | lineage4.4.1.1 | None | SRR1162887 | MDR-TB | lineage4.4.1.1 | None | SRR1163008 | MDR-TB | lineage4.2.2.2 | None | SRR1163174 | MDR-TB | lineage4.2.2.2 | None | SRR1163077 | MDR-TB | lineage4.4.1.1 | None | SRR1163110 | MDR-TB | lineage4.2.2.2 | None | SRR1165444 | MDR-TB | lineage4.4.1.1 | None | SRR1163208 | MDR-TB | lineage4.2.2.2 | None | SRR1165432 | MDR-TB | lineage4.2.2.2 | None | SRR1163201 | MDR-TB | lineage4.2.2.2 | None | SRR1167131 | MDR-TB | lineage4.2.2.2 | None | SRR1166813 | MDR-TB | lineage4.2.2.2 | None | SRR1166876 | MDR-TB | lineage4.2.2.2 | None | SRR13870403 | Pre-XDR-TB | lineage4.3.3 | None | SRR1167087 | MDR-TB | lineage4.4.1.1 | None | SRR11972353 | MDR-TB | lineage1 | None | SRR15368806 | HR-TB | lineage2.2.1.1 | None | SRR15315838 | MDR-TB | lineage4.4.2 | None | SRR16370478 | MDR-TB | lineage4.3.3 | None | SRR2100766 | Other | lineage4.1.1 | None | SRR2099974 | MDR-TB | lineage1.2.2.2 | None | SRR16370489 | MDR-TB | lineage4.3.4.2 | None | SRR17234904 | MDR-TB | lineage4.3.3 | None | SRR2100231 | MDR-TB | lineage1.2.2.2 | None | SRR2100511 | Other | lineage3 | None | ERR4813731 | MDR-TB | lineage4.3.3 | None | SRR2100918 | HR-TB | lineage3;lineage1.2.2.2 | None | SRR21277842 | HR-TB | lineage2.2.1.1 | None | SRR2100920 | MDR-TB | lineage1.2.2.2 | None | SRR21277384 | MDR-TB | lineage2.2.1.1 | None | ERR11082116 | MDR-TB | lineage4.2.2.2 | None | ERR4813703 | MDR-TB | lineage4.3.3 | None | ERR4813716 | MDR-TB | lineage4.3.3 | None | ERR1200620 | MDR-TB | lineage4.2.2.2 | et | SRR3082073 | MDR-TB | lineage4.2.2.2 | None | SRR3085331 | MDR-TB | lineage4.2.2.2 | None | SAMN02414946 | MDR-TB | lineage4.4.1.1 | se | ERR3275847 | MDR-TB | lineage4.2.2.2 | nl | ERR4815342 | Other | lineage1.2.1.2.1 | None | ERR4812806 | MDR-TB | lineage4.3.3 | pe | ERR4812752 | MDR-TB | lineage4.3.4.2 | pe | ERR4812805 | MDR-TB | lineage4.3.3 | None | ERR4812749 | MDR-TB | lineage4.3.3 | pe | ERR4812776 | MDR-TB | lineage4.3.3 | pe | ERR4812847 | MDR-TB | lineage4.3.3 | None | ERR4812958 | MDR-TB | lineage4.3.3 | pe | ERR4812877 | MDR-TB | lineage4.3.3 | None | ERR4812964 | MDR-TB | lineage4.3.3 | pe | ERR4813031 | MDR-TB | lineage4.3.3 | None | ERR4813007 | MDR-TB | lineage4.3.3 | None | ERR4813019 | MDR-TB | lineage4.3.3 | None | ERR4813025 | MDR-TB | lineage4.3.3 | None | ERR3148185 | MDR-TB | lineage4.1.2.1 | mx | ERR4813053 | MDR-TB | lineage4.3.3 | None | ERR4813073 | MDR-TB | lineage4.3.3 | pe | ERR4813342 | MDR-TB | lineage4.3.3 | pe | ERR4813079 | MDR-TB | lineage4.3.3 | pe | ERR4813339 | MDR-TB | lineage4.3.3 | None | ERR4813082 | MDR-TB | lineage4.3.3 | pe | ERR4813321 | MDR-TB | lineage4 | None | ERR4813364 | MDR-TB | lineage4.3.3 | pe | ERR4813536 | MDR-TB | lineage4.3.3 | None | ERR4813469 | MDR-TB | lineage4.3.4.2 | pe | ERR4813449 | MDR-TB | lineage4.3.4.2 | pe | ERR4813554 | MDR-TB | lineage4.3.4.2 | None | ERR4813563 | MDR-TB | lineage4.3.3 | None | ERR4813604 | Pre-XDR-TB | lineage4.3.3 | None | ERR4813623 | MDR-TB | lineage4.3.3 | None | ERR4813642 | MDR-TB | lineage4.3.3 | None | ERR4813630 | Pre-XDR-TB | lineage4.3.4.2 | None | SAMN03246623 | MDR-TB | lineage4.5 | cn | ERR4813666 | MDR-TB | lineage4.3.4.2 | None | ERR4813686 | MDR-TB | lineage4.3.3 | None | SRR3732570 | MDR-TB | lineage4.3.3 | None | SAMN02414888 | MDR-TB | lineage4.2.2.2 | se | ERR2184353 | MDR-TB | lineage4.3.3 | None | ERR2510194 | MDR-TB | lineage4.3.3 | pe | ERR2510517 | Pre-XDR-TB | lineage3 | pk | ERR2510593 | MDR-TB | lineage1.1.2 | None | SRR5065494 | Other | lineage1.1.1.1 | vn | SAMN02414899 | MDR-TB | lineage4.2.2.2 | se | ERR2510170 | MDR-TB | lineage4.3.4.2 | pe | ERR2179648 | MDR-TB | lineage4.5 | cn | SRR5065371 | Pre-XDR-TB | lineage2.2 | vn | ERR228152 | Other | lineage3 | None | SRR5067280 | HR-TB | lineage1.1.1.1 | vn | SRR5067323 | Other | lineage1.1.1.1 | vn | ERR2510153 | MDR-TB | lineage4.3.3 | pe | ERR2510217 | MDR-TB | lineage4.3.4.2 | pe | ERR2510196 | MDR-TB | lineage4.3.4.2 | pe | ERR2510202 | MDR-TB | lineage4.3.4.2 | pe | SRR5065280 | Other | lineage1.1.1.1 | vn | ERR2510232 | MDR-TB | lineage4.3.3 | pe | ERR2510238 | MDR-TB | lineage4.3.3 | pe | ERR2510224 | MDR-TB | lineage4.3.4.2 | pe | ERR2510316 | MDR-TB | lineage1.1.2 | pk | ERR2516668 | Pre-XDR-TB | lineage4.3.3 | pe | ERR4820238 | Other | lineage1.2.1.2.1 | None | ERR2516467 | RR-TB | lineage4.1.2.1 | pe | ERR2516527 | Pre-XDR-TB | lineage4.3.3 | None | ERR2516613 | MDR-TB | lineage2.2.1 | nl | ERR2516628 | Pre-XDR-TB | lineage4.3.3 | None | ERR233350 | MDR-TB | lineage4.2.2.2 | et | ERR2653233 | Pre-XDR-TB | lineage4.3.3 | None | ERR2653223 | Pre-XDR-TB | lineage4.3.3 | None | ERR2652994 | MDR-TB | lineage4.1.2.1 | None | ERR2653155 | MDR-TB | lineage4.1.2.1 | None | ERR2653201 | Pre-XDR-TB | lineage4.3.3 | None | ERR2653212 | Pre-XDR-TB | lineage4.3.3 | None | ERR2653238 | Pre-XDR-TB | lineage4.3.3 | None | ERR270664 | MDR-TB | lineage1.2.2.2 | None | ERR2653237 | Pre-XDR-TB | lineage4.3.3 | None | ERR270685 | MDR-TB | lineage1.2.2.2 | None | ERR266549 | Other | lineage4.1.1 | None | ERR2706948 | MDR-TB | lineage4.6.1.2 | cd | ERR278531 | HR-TB | lineage3;lineage1.2.2.2 | None | ERR278533 | MDR-TB | lineage1.2.2.2 | None | ERR2707149 | MDR-TB | lineage4.6.2.2 | cd | SRR5818577 | MDR-TB | lineage4.2.2.2 | dj | ERR4822303 | MDR-TB | lineage4.2.2.2 | de | SRR5709789 | MDR-TB | lineage1.1.1 | th | SRR5818595 | MDR-TB | lineage4.2.2.2 | dj |
---|