Rv1129c - c.-89C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
57 Sensitive
4 RR-TB
11 HR-TB
102 MDR-TB
54 Pre-XDR-TB
8 XDR-TB
9 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.6.1.2 | 45 |
| lineage3.1.2.1 | 8 |
| lineage2.2.1 | 84 |
| lineage2.2.2 | 11 |
| lineage3.1.1 | 2 |
| lineage5.2 | 3 |
| lineage4.3.4.2 | 6 |
| lineage3 | 27 |
| lineage4.1.2.1 | 5 |
| lineage4.4.1.2 | 2 |
| lineage3.1.3 | 1 |
| lineage1.1.3.1 | 1 |
| lineage4.2.2.2 | 10 |
| lineage1.2.1.2.1 | 2 |
| lineage4.8 | 1 |
| lineage1.2.2.2 | 1 |
| lineage4.3.3 | 7 |
| lineage4.4.1.1 | 2 |
| lineage4.4 | 1 |
| lineage4.2.1 | 6 |
| lineage3.1.2 | 1 |
| lineage2.2.1.1 | 2 |
| lineage1.1.1 | 2 |
| lineage1.1 | 2 |
| lineage1.2.1.2 | 1 |
| lineage2.1 | 2 |
| lineage4.2.2 | 1 |
| lineage4.2.2.1 | 1 |
| lineage4.1.3 | 1 |
| La1.8.1 | 1 |
| lineage4.2.1.1 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage4.4.2 | 1 |
| lineage5.1.1 | 1 |
| lineage1.1.2 | 1 |
| lineage1.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 245 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR29231844 | MDR-TB | lineage4.6.1.2 | None | SRR7070675 | Sensitive | lineage3.1.2.1 | None | SRR10305615 | Pre-XDR-TB | lineage2.2.1 | None | SRR29681431 | Pre-XDR-TB | lineage2.2.1 | None | ERR13245323 | Pre-XDR-TB | lineage2.2.2 | None | SRR19428534 | Sensitive | lineage3.1.1 | None | SRR29231322 | MDR-TB | lineage5.2 | None | SRR28868881 | Sensitive | lineage4.3.4.2 | None | ERR13266714 | XDR-TB | lineage3 | None | ERR13278944 | MDR-TB | lineage3 | None | ERR12268466 | Sensitive | lineage4.1.2.1 | None | ERR13261260 | Pre-XDR-TB | lineage3 | None | SRR14165008 | Sensitive | lineage4.4.1.2 | None | SRR24112528 | RR-TB | lineage2.2.2 | None | ERR11050351 | Sensitive | lineage3.1.1 | None | ERR3335774 | Pre-XDR-TB | lineage3.1.3 | pk | SRR6964483 | Sensitive | lineage3 | None | SRR24112527 | MDR-TB | lineage2.2.2 | None | ERR3639817 | MDR-TB | lineage2.2.1 | None | SRR6650427 | Sensitive | lineage1.1.3.1 | None | ERR9634306 | Sensitive | lineage4.1.2.1 | None | SRR29440887 | Sensitive | lineage4.6.1.2 | None | SAMN03246267 | Pre-XDR-TB | lineage2.2.1 | cn | SRR1723512 | HR-TB | lineage2.2.1 | None | ERR4810476 | Pre-XDR-TB | lineage2.2.1 | cn | SRR6824708 | MDR-TB | lineage2.2.1 | cn | ERR6359008 | Sensitive | lineage4.6.1.2 | None | ERR7911158 | MDR-TB | lineage2.2.1 | vn | ERR2706925 | MDR-TB | lineage4.6.1.2 | cd | ERR2707024 | MDR-TB | lineage4.6.1.2 | cd | ERR4830845 | MDR-TB | lineage4.2.2.2 | et | SRR12006685 | Sensitive | lineage1.2.1.2.1 | None | ERR4816149 | HR-TB | lineage3 | gb | SRR20970002 | Pre-XDR-TB | lineage2.2.1 | None | SRR16370527 | Pre-XDR-TB | lineage2.2.1 | None | SRR6831854 | Pre-XDR-TB | lineage2.2.1 | None | SRR29231725 | MDR-TB | lineage4.6.1.2 | None | SRR5065250 | MDR-TB | lineage2.2.1 | vn | ERR3794459 | MDR-TB | lineage2.2.1 | None | SRR28646098 | Pre-XDR-TB | lineage4.8 | None | SRR5073582 | Sensitive | lineage2.2.1 | vn | SRR5073547 | Other | lineage2.2.1 | vn | SRR6831904 | MDR-TB | lineage2.2.1 | None | SRR10305617 | Pre-XDR-TB | lineage2.2.1 | None | ERR2517569 | MDR-TB | lineage4.2.2.2 | nl | SRR15315994 | XDR-TB | lineage2.2.1 | None | ERR3794451 | MDR-TB | lineage2.2.1 | None | ERR2660478 | Sensitive | lineage1.2.2.2 | None | ERR1654669 | MDR-TB | lineage4.6.1.2 | None | ERR11798641 | MDR-TB | lineage4.3.3 | None | SRR25515273 | Sensitive | lineage2.2.1 | None | ERR2446183 | MDR-TB | lineage4.2.2.2 | nl | SRR29230780 | MDR-TB | lineage4.6.1.2 | None | ERR3275336 | MDR-TB | lineage4.2.2.2 | nl | SRR29231233 | Sensitive | lineage3.1.2.1 | None | SRR10397130 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865286 | Pre-XDR-TB | lineage2.2.1 | None | ERR11466425 | HR-TB | lineage4.4.1.1 | None | ERR13249750 | Sensitive | lineage3 | None | ERR551020_ERR551019 | MDR-TB | lineage2.2.1 | None | SRR16370557 | MDR-TB | lineage2.2.1 | None | SRR15315964 | Pre-XDR-TB | lineage4.4 | None | SRR1723844 | HR-TB | lineage2.2.1 | None | SRR29231653 | MDR-TB | lineage4.6.1.2 | None | ERR11775884 | Sensitive | lineage4.3.4.2 | None | SRR29274289 | RR-TB | lineage4.4.1.1 | None | ERR867524 | Pre-XDR-TB | lineage4.2.1 | None | ERR4817803 | Other | lineage4.2.2.2 | None | ERR3639755 | Pre-XDR-TB | lineage2.2.1 | None | SRR29231815 | MDR-TB | lineage4.6.1.2 | None | SRR7535044 | Pre-XDR-TB | lineage4.6.1.2 | None | SRR6480570 | Sensitive | lineage2.2.1 | None | ERR9286060 | Sensitive | lineage4.3.4.2 | None | SRR16370314 | MDR-TB | lineage2.2.1 | None | SRR1723845 | Pre-XDR-TB | lineage2.2.1 | None | ERR3273145 | MDR-TB | lineage2.2.1 | None | SRR6045855 | Sensitive | lineage3 | None | ERR13288887 | XDR-TB | lineage2.2.2 | None | ERR2516712 | MDR-TB | lineage4.6.1.2 | None | SRR29231795 | MDR-TB | lineage4.6.1.2 | None | ERR551019 | MDR-TB | lineage2.2.1 | None | ERR4818162 | Sensitive | lineage3.1.2.1 | None | SRR29230786 | MDR-TB | lineage4.6.1.2 | None | ERR4797537 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797844 | Pre-XDR-TB | lineage3.1.2 | in | SRR25207147 | MDR-TB | lineage2.2.1 | None | ERR4831364 | Other | lineage3 | de | SRR15315795 | RR-TB | lineage2.2.1.1 | None | ERR2653199 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR4822365 | MDR-TB | lineage2.2.1 | None | ERR3014592 | Pre-XDR-TB | lineage4.6.1.2 | None | ERR9993169 | XDR-TB | lineage2.2.2 | None | ERR4821070 | Sensitive | lineage3 | None | ERR4813437 | MDR-TB | lineage2.2.1 | pe | SRR1723513 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827852 | XDR-TB | lineage3 | None | ERR775796 | Sensitive | lineage1.1.1 | th | ERR718556 | Sensitive | lineage1.1 | th | ERR751837 | MDR-TB | lineage2.2.1 | th | ERR775779 | HR-TB | lineage1.1 | th | SRR28045525 | Sensitive | lineage3 | None | ERR718273 | MDR-TB | lineage2.2.1 | th | ERR751762 | Sensitive | lineage1.2.1.2 | th | ERR751993 | Sensitive | lineage2.1 | th | ERR718247 | HR-TB | lineage1.1.1 | th | SRR28045524 | Sensitive | lineage3 | None | SRR28339300 | Pre-XDR-TB | lineage2.2.1 | None | ERR7911182 | MDR-TB | lineage2.2.1 | vn | ERR4811279 | Sensitive | lineage4.2.2 | cn | ERR2707057 | MDR-TB | lineage4.6.1.2 | cd | ERR2707084 | MDR-TB | lineage4.6.1.2 | cd | SRR14801452 | MDR-TB | lineage4.2.1 | None | ERR8976072 | Pre-XDR-TB | lineage2.2.2 | None | ERR4829743 | Sensitive | lineage4.1.2.1 | None | SRR22048551 | MDR-TB | lineage4.2.1 | None | ERR8976088 | Pre-XDR-TB | lineage2.2.2 | None | ERR11050141 | Sensitive | lineage3 | None | ERR550978 | HR-TB | lineage3 | de | SAMEA2533639 | MDR-TB | lineage2.2.1 | uz | ERR552091 | Other | lineage4.2.2.1 | de | ERR1199098 | MDR-TB | lineage4.6.1.2 | cd | ERR1199103 | MDR-TB | lineage4.6.1.2 | cd | ERR1199105 | MDR-TB | lineage4.6.1.2 | cd | ERR1199113 | MDR-TB | lineage4.6.1.2 | cd | ERR4821374 | Sensitive | lineage3.1.2.1 | gb | ERR2514687 | Sensitive | lineage3.1.2.1 | gb | ERR2512957 | Sensitive | lineage3.1.2.1 | gb | ERR2513488 | MDR-TB | lineage4.3.3 | gb | DRR034482 | Sensitive | lineage2.2.1 | None | ERR2704810 | Sensitive | lineage5.2 | fr | SRR14801292 | MDR-TB | lineage4.2.1 | None | ERR13232613 | MDR-TB | lineage2.2.1 | None | SRR3724965 | MDR-TB | lineage4.1.3 | ci | SRR29231676 | MDR-TB | lineage4.6.1.2 | None | SRR20969803 | HR-TB | lineage2.2.1 | None | SRR1791706 | Other | La1.8.1 | None | ERR1654693 | MDR-TB | lineage4.6.1.2 | None | SRR16088585 | MDR-TB | lineage2.2.1 | None | SAMN03246565 | Pre-XDR-TB | lineage2.2.1 | cn | ERR4799493 | Pre-XDR-TB | lineage3 | in | ERR13288753 | Pre-XDR-TB | lineage2.2.2 | None | ERR13291924 | Sensitive | lineage2.2.1 | None | ERR3256162 | Other | lineage1.2.1.2.1 | ph | ERR11067711 | Sensitive | lineage4.1.2.1 | None | SRR14807477 | Pre-XDR-TB | lineage2.2.1 | None | SRR21276916 | XDR-TB | lineage2.2.1 | None | SRR21709858 | Sensitive | lineage2.2.1 | None | ERR2145524 | MDR-TB | lineage4.2.2.2 | None | SRR14782415 | Other | lineage4.2.1.1 | None | SRR1723846 | Pre-XDR-TB | lineage2.2.1 | cn | SRR1723847 | Pre-XDR-TB | lineage2.2.1 | cn | ERR6397195 | MDR-TB | lineage3 | None | ERR1654674 | MDR-TB | lineage4.6.1.2 | None | SRR10305652 | MDR-TB | lineage2.2.1 | None | SRR29126934 | Sensitive | lineage3 | None | ERR13284102 | Sensitive | lineage3 | None | ERR5865287 | Pre-XDR-TB | lineage2.2.1 | None | ERR9117676 | Sensitive | lineage4.2.2.2 | None | ERR1654682 | MDR-TB | lineage4.6.1.2 | None | SRR29231826 | MDR-TB | lineage4.6.1.2 | None | SRR21887658 | MDR-TB | lineage2.2.1 | None | SRR29231685 | MDR-TB | lineage4.6.1.2 | None | SRR10306004 | Pre-XDR-TB | lineage2.2.1 | None | SRR24112526 | MDR-TB | lineage2.2.2 | None | ERR3794457 | Pre-XDR-TB | lineage2.2.1 | None | SRR11662677 | Pre-XDR-TB | lineage2.1 | None | SRR29231679 | MDR-TB | lineage4.6.1.2 | None | ERR4814365 | Sensitive | lineage4.3.4.2.1 | None | SRR21277253 | RR-TB | lineage2.2.1.1 | None | ERR13258504 | MDR-TB | lineage2.2.1 | None | SRR15368778 | Sensitive | lineage4.4.2 | None | ERR13284192 | MDR-TB | lineage2.2.1 | None | SRR25207091 | Pre-XDR-TB | lineage2.2.1 | None | SRR13870424 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR2510368 | Pre-XDR-TB | lineage3 | pk | SRR6356933 | MDR-TB | lineage2.2.1 | None | ERR2510587 | Pre-XDR-TB | lineage3 | pk | SRR29289236 | XDR-TB | lineage3 | None | ERR1654664 | MDR-TB | lineage4.6.1.2 | None | DRR189033 | Sensitive | lineage2.2.1 | None | DRR130060 | MDR-TB | lineage2.2.1 | None | SRR29914414 | Pre-XDR-TB | lineage2.2.1 | None | ERR4830805 | MDR-TB | lineage4.2.2.2 | et | SRR25207341 | MDR-TB | lineage2.2.1 | None | ERR4809357 | Pre-XDR-TB | lineage2.2.2 | za | SRR28339299 | Pre-XDR-TB | lineage2.2.1 | None | SRR20970017 | HR-TB | lineage2.2.1 | None | SRR28409375 | Other | lineage3 | None | ERR4811346 | MDR-TB | lineage2.2.1 | cn | ERR2653145 | Pre-XDR-TB | lineage4.3.3 | None | ERR4822300 | MDR-TB | lineage3 | de | ERR2707070 | MDR-TB | lineage4.6.1.2 | cd | ERR2707020 | MDR-TB | lineage4.6.1.2 | cd | ERR2707060 | MDR-TB | lineage4.6.1.2 | cd | ERR2706990 | MDR-TB | lineage4.6.1.2 | cd | ERR2707026 | MDR-TB | lineage4.6.1.2 | cd | ERR2707170 | MDR-TB | lineage5.2 | cd | ERR2707012 | MDR-TB | lineage4.6.1.2 | cd | ERR2706921 | MDR-TB | lineage4.6.1.2 | cd | ERR2707123 | MDR-TB | lineage4.6.1.2 | cd | ERR2707132 | MDR-TB | lineage4.6.1.2 | cd | ERR2706919 | MDR-TB | lineage4.6.1.2 | cd | ERR4830799 | MDR-TB | lineage4.2.2.2 | et | ERR9286059 | Sensitive | lineage4.3.4.2 | None | SRR2100273 | Sensitive | lineage3 | None | ERR1199096 | MDR-TB | lineage4.6.1.2 | cd | ERR108458 | MDR-TB | lineage2.2.1 | ru | ERR137284 | MDR-TB | lineage4.3.3 | ru | ERR1082120 | HR-TB | lineage5.1.1 | gh | SRR1710089 | Sensitive | lineage2.2.1 | cn | ERR2516972 | MDR-TB | lineage4.2.2.2 | gb | SRR6824471 | Pre-XDR-TB | lineage2.2.1 | cn | SRR6824527 | Pre-XDR-TB | lineage2.2.1 | cn | SRR6824530 | Pre-XDR-TB | lineage2.2.1 | cn | SRR6824580 | Pre-XDR-TB | lineage2.2.1 | cn | SRR6824629 | Pre-XDR-TB | lineage2.2.1 | cn | SRR6824569 | MDR-TB | lineage2.2.1 | cn | SRR14801420 | MDR-TB | lineage4.2.1 | None | SRR29231840 | MDR-TB | lineage4.6.1.2 | None | ERR5865285 | Pre-XDR-TB | lineage2.2.1 | None | ERR1654675 | MDR-TB | lineage4.6.1.2 | None | SRR25207257 | Pre-XDR-TB | lineage2.2.1 | None | ERR4818681 | Sensitive | lineage3.1.2.1 | None | SRR10809040 | Sensitive | lineage4.1.2.1 | None | SRR14801480 | MDR-TB | lineage4.2.1 | None | SRR21887728 | Pre-XDR-TB | lineage2.2.1 | None | ERR5917664 | MDR-TB | lineage2.2.1 | by | ERR4808905 | XDR-TB | lineage2.2.2 | za | ERR4276913 | MDR-TB | lineage3 | None | SRR15014726 | MDR-TB | lineage4.3.3 | None | SRR29231739 | MDR-TB | lineage4.6.1.2 | None | SRR7070198 | Sensitive | lineage3.1.2.1 | None | SRR1723453 | MDR-TB | lineage2.2.1 | cn | SRR29231001 | MDR-TB | lineage4.6.1.2 | None | SRR29096927 | Sensitive | lineage2.2.1 | None | SRR29096914 | Sensitive | lineage4.6.1.2 | None | ERR114424 | Sensitive | lineage3 | None | SRR29772395 | MDR-TB | lineage1.1.2 | None | SRR14165112 | Sensitive | lineage4.4.1.2 | None | ERR9117814 | Sensitive | lineage3 | None | ERR4800165 | Pre-XDR-TB | lineage4.3.3 | None | SRR21732530 | Other | lineage1.2.1 | None | ERR13284656 | MDR-TB | lineage2.2.1 | None | SRR7069156 | MDR-TB | lineage4.3.3 | None | ERR13266653 | HR-TB | lineage2.2.1 | None |
|---|
